Wall clock time and date at job start Wed Apr 1 2020 01:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40229 * 126.66103 * 2 1 4 4 N 1.28638 * 109.50776 * 179.97438 * 3 2 1 5 5 C 1.35428 * 110.13555 * 359.97438 * 4 3 2 6 6 C 1.39793 * 133.04836 * 180.29973 * 5 4 3 7 7 C 1.38876 * 119.55960 * 180.19849 * 6 5 4 8 8 C 1.47713 * 119.86406 * 179.74994 * 7 6 5 9 9 O 1.21580 * 119.99906 * 359.72291 * 8 7 6 10 10 N 1.34778 * 120.00340 * 179.72226 * 8 7 6 11 11 C 1.46504 * 120.00279 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.68136 * 37.01252 * 11 10 8 13 13 C 1.55475 * 110.60770 * 160.15293 * 11 10 8 14 14 C 1.55848 * 103.32492 * 118.41867 * 13 11 10 15 15 H 1.08998 * 116.12899 * 159.23369 * 14 13 11 16 16 C 1.56854 * 105.77510 * 288.56084 * 14 13 11 17 17 C 1.54858 * 103.35524 * 71.45566 * 16 14 13 18 18 C 1.55837 * 110.62408 * 274.02727 * 11 10 8 19 19 H 1.09003 * 115.56577 * 82.69509 * 18 11 10 20 20 N 1.50229 * 101.05130 * 33.01999 * 14 13 11 21 21 C 1.36946 * 130.83735 * 126.07020 * 20 14 13 22 22 H 1.08001 * 119.99777 * 179.66189 * 21 20 14 23 23 C 1.38805 * 119.99877 * 359.66218 * 21 20 14 24 24 N 1.31618 * 120.00131 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00109 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.46967 * 89.99591 * 25 23 21 27 27 H 1.48497 * 109.47044 * 210.00236 * 25 23 21 28 28 H 1.48508 * 109.46579 * 329.99943 * 25 23 21 29 29 C 1.40255 * 120.27358 * 359.47041 * 7 6 5 30 30 C 1.36261 * 120.45247 * 0.25625 * 29 7 6 31 31 C 1.37271 * 126.65509 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47137 * 270.00471 * 1 2 3 33 33 H 1.08996 * 109.46695 * 30.00556 * 1 2 3 34 34 H 1.08997 * 109.46856 * 150.00227 * 1 2 3 35 35 H 1.08004 * 120.21531 * 359.94447 * 6 5 4 36 36 H 0.96991 * 119.99736 * 359.97438 * 10 8 7 37 37 H 1.09001 * 110.61424 * 0.02562 * 13 11 10 38 38 H 1.09004 * 110.75532 * 236.89958 * 13 11 10 39 39 H 1.09000 * 110.43789 * 313.10823 * 16 14 13 40 40 H 1.08996 * 111.04377 * 190.09588 * 16 14 13 41 41 H 1.08999 * 110.63002 * 241.78564 * 17 16 14 42 42 H 1.08996 * 110.76143 * 118.83089 * 17 16 14 43 43 H 0.97006 * 120.00033 * 179.97438 * 24 23 21 44 44 H 1.08002 * 119.77139 * 180.27572 * 29 7 6 45 45 H 1.07999 * 119.92425 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3023 1.1249 0.0000 4 7 3.5315 0.7455 0.0005 5 6 3.6019 -0.6069 0.0015 6 6 4.6717 -1.5067 0.0077 7 6 4.4185 -2.8722 0.0027 8 6 5.5439 -3.8290 0.0036 9 8 6.6891 -3.4205 0.0037 10 7 5.3014 -5.1548 0.0045 11 6 6.4176 -6.1037 0.0059 12 1 7.2379 -5.7322 0.6201 13 6 5.9476 -7.5006 0.5007 14 6 6.2161 -8.4249 -0.7250 15 1 6.2965 -9.4912 -0.5137 16 6 5.1417 -8.0326 -1.7983 17 6 5.6125 -6.6393 -2.2832 18 6 6.9032 -6.3823 -1.4484 19 1 7.5927 -5.6469 -1.8631 20 7 7.4396 -7.7788 -1.3103 21 6 8.6647 -8.3029 -1.6263 22 1 9.4296 -7.6697 -2.0511 23 6 8.9234 -9.6478 -1.4006 24 7 7.9911 -10.4196 -0.8834 25 14 10.5948 -10.3626 -1.8309 26 1 11.4991 -10.2473 -0.6588 27 1 10.4415 -11.7929 -2.1992 28 1 11.1723 -9.6154 -2.9771 29 6 3.0987 -3.3466 0.0027 30 6 2.0515 -2.4748 0.0024 31 6 2.2845 -1.1013 0.0005 32 1 -0.3633 0.0001 1.0277 33 1 -0.3632 0.8899 -0.5139 34 1 -0.3633 -0.8900 -0.5138 35 1 5.6884 -1.1423 0.0122 36 1 4.3879 -5.4806 0.0048 37 1 4.8851 -7.4843 0.7434 38 1 6.5344 -7.8234 1.3608 39 1 4.1540 -7.9667 -1.3419 40 1 5.1350 -8.7443 -2.6238 41 1 4.8585 -5.8824 -2.0671 42 1 5.8416 -6.6580 -3.3486 43 1 8.1717 -11.3596 -0.7260 44 1 2.9111 -4.4102 0.0033 45 1 1.0385 -2.8494 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095622381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:06 Heat of formation + Delta-G solvation = 135.620133 kcal Electronic energy + Delta-G solvation = -29223.769031 eV Core-core repulsion = 25245.030368 eV Total energy + Delta-G solvation = -3978.738663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.42319 -40.17557 -38.68201 -37.18020 -35.10347 -34.05760 -32.37816 -31.09787 -30.81905 -29.28826 -28.99101 -28.00708 -27.49122 -24.79374 -24.00171 -23.57707 -21.59831 -21.42755 -20.85122 -19.59086 -18.67860 -18.35976 -17.76477 -17.06949 -16.50930 -16.38131 -16.05400 -15.13519 -14.95456 -14.79958 -14.59350 -14.23371 -13.97945 -13.94119 -13.76783 -13.61256 -13.23096 -12.66660 -12.43251 -12.35971 -12.16088 -12.05150 -11.79609 -11.51885 -11.12895 -11.08882 -11.02701 -10.92825 -10.90135 -10.83857 -10.21277 -10.09670 -9.91216 -9.76701 -9.42295 -9.28956 -9.26275 -8.94588 -8.74810 -8.50714 -6.92266 -5.73566 -3.11314 0.10485 0.57408 1.66233 1.82089 2.73604 3.22479 3.40188 3.45477 3.46837 3.60683 3.72288 3.94993 4.21024 4.42608 4.48919 4.54650 4.59532 4.76426 4.78389 4.88248 5.07615 5.18743 5.37754 5.47361 5.50916 5.58238 5.75875 5.79757 5.83847 5.86854 5.94909 6.05361 6.08265 6.08715 6.21434 6.27793 6.30564 6.51563 6.57366 6.63716 6.79681 6.94725 6.97906 7.23995 7.51881 7.61126 7.69628 7.80158 8.15831 8.40323 9.09977 9.72513 10.52389 11.36070 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029724 B = 0.002314 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.783407 B =12095.988905 C =12613.283460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.400 5.400 3 N -0.010 5.010 4 N -0.207 5.207 5 C -0.027 4.027 6 C 0.034 3.966 7 C -0.144 4.144 8 C 0.556 3.444 9 O -0.534 6.534 10 N -0.705 5.705 11 C 0.128 3.872 12 H 0.085 0.915 13 C -0.138 4.138 14 C 0.153 3.847 15 H 0.155 0.845 16 C -0.137 4.137 17 C -0.130 4.130 18 C 0.128 3.872 19 H 0.085 0.915 20 N -0.590 5.590 21 C -0.209 4.209 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.917 3.083 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C -0.038 4.038 30 C -0.128 4.128 31 C 0.103 3.897 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.394 0.606 37 H 0.054 0.946 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.254 0.746 44 H 0.142 0.858 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.633 14.553 3.023 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.194 5.194 3 N 0.010 4.990 4 N -0.086 5.086 5 C -0.151 4.151 6 C 0.010 3.990 7 C -0.151 4.151 8 C 0.342 3.658 9 O -0.412 6.412 10 N -0.356 5.356 11 C 0.023 3.977 12 H 0.103 0.897 13 C -0.178 4.178 14 C 0.047 3.953 15 H 0.171 0.829 16 C -0.177 4.177 17 C -0.170 4.170 18 C 0.019 3.981 19 H 0.103 0.897 20 N -0.311 5.311 21 C -0.337 4.337 22 H 0.097 0.903 23 C -0.208 4.208 24 N -0.573 5.573 25 Si 0.747 3.253 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.208 1.208 29 C -0.060 4.060 30 C -0.150 4.150 31 C -0.019 4.019 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.111 0.889 35 H 0.172 0.828 36 H 0.229 0.771 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.160 0.840 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.594 16.125 2.988 24.793 hybrid contribution -0.047 -1.432 -0.251 1.454 sum -18.641 14.694 2.737 23.893 Atomic orbital electron populations 1.22024 0.72698 1.05321 1.04189 1.50118 1.07899 1.03518 1.57860 1.81643 0.94056 1.07568 1.15734 1.74872 1.11161 1.10481 1.12108 1.19803 0.93089 0.90155 1.12039 1.20603 0.98551 0.89980 0.89828 1.19840 0.93801 0.93482 1.07938 1.17953 0.88132 0.82509 0.77194 1.90807 1.22057 1.78504 1.49834 1.46135 1.10404 1.05307 1.73730 1.22801 0.87576 0.87784 0.99580 0.89677 1.23364 0.98685 0.94763 1.01006 1.23961 0.83449 0.99939 0.87985 0.82872 1.23221 0.97710 0.96294 1.00450 1.22894 0.97896 0.96784 0.99397 1.23195 0.93214 0.88975 0.92711 0.89652 1.46492 1.10435 1.02548 1.71586 1.19071 0.87968 0.92605 1.34023 0.90286 1.24691 0.98251 0.96008 1.01839 1.69429 1.32113 1.05539 1.50180 0.86027 0.83058 0.78183 0.77986 1.21642 1.21719 1.20759 1.20967 0.90897 1.00137 0.93984 1.19675 1.00522 0.87958 1.06879 1.19488 0.90925 0.90601 1.00894 0.89876 0.88410 0.88873 0.82795 0.77101 0.92741 0.91394 0.93808 0.92629 0.93173 0.93033 0.93582 0.83988 0.84472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.35 11.52 59.85 0.69 1.04 16 2 N -0.40 -3.56 4.11 -65.43 -0.27 -3.83 16 3 N -0.01 -0.12 13.72 60.35 0.83 0.71 16 4 N -0.21 -2.76 12.40 32.15 0.40 -2.36 16 5 C -0.03 -0.33 7.26 -84.77 -0.62 -0.95 16 6 C 0.03 0.41 9.64 -38.76 -0.37 0.04 16 7 C -0.14 -1.65 5.87 -105.03 -0.62 -2.27 16 8 C 0.56 8.13 7.76 -12.39 -0.10 8.03 16 9 O -0.53 -9.99 16.05 5.30 0.08 -9.90 16 10 N -0.70 -9.64 3.61 -52.05 -0.19 -9.82 16 11 C 0.13 2.28 3.10 -65.10 -0.20 2.08 16 12 H 0.09 1.71 7.71 -51.93 -0.40 1.31 16 13 C -0.14 -2.48 6.25 -23.90 -0.15 -2.63 16 14 C 0.15 3.31 4.72 -62.24 -0.29 3.02 16 15 H 0.15 3.82 5.52 -51.93 -0.29 3.54 16 16 C -0.14 -2.52 6.50 -23.67 -0.15 -2.67 16 17 C -0.13 -2.30 6.34 -24.23 -0.15 -2.46 16 18 C 0.13 2.61 5.29 -62.80 -0.33 2.28 16 19 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 20 N -0.59 -14.34 2.97 -145.22 -0.43 -14.77 16 21 C -0.21 -5.67 10.59 -15.06 -0.16 -5.83 16 22 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.92 -25.77 10.46 55.49 0.58 -25.19 16 25 Si 0.92 21.85 29.55 -169.99 -5.02 16.83 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 29 C -0.04 -0.31 9.46 -39.54 -0.37 -0.68 16 30 C -0.13 -0.94 9.97 -39.89 -0.40 -1.33 16 31 C 0.10 1.01 6.93 -84.10 -0.58 0.42 16 32 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 35 H 0.15 1.93 7.62 -52.48 -0.40 1.53 16 36 H 0.39 4.13 6.05 -40.82 -0.25 3.89 16 37 H 0.05 0.79 7.41 -51.93 -0.38 0.40 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.04 0.66 7.88 -51.93 -0.41 0.25 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.14 0.79 6.36 -52.49 -0.33 0.46 16 45 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -33.38 367.20 -8.12 -41.50 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.73 Total: 3.65 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.91 Total: -2.35 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: 0.92 Total: -55.26 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.38 -8.12 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095622381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.122 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds