Wall clock time and date at job start Wed Apr 1 2020 01:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 N 1.40229 * 126.66103 * 2 1 4 4 N 1.28638 * 109.50776 * 179.97438 * 3 2 1 5 5 C 1.35428 * 110.13555 * 359.97438 * 4 3 2 6 6 C 1.39793 * 133.04836 * 180.29973 * 5 4 3 7 7 C 1.38876 * 119.55960 * 180.19849 * 6 5 4 8 8 C 1.47713 * 119.86406 * 179.74994 * 7 6 5 9 9 O 1.21580 * 119.99906 * 359.72291 * 8 7 6 10 10 N 1.34778 * 120.00340 * 179.72226 * 8 7 6 11 11 C 1.46504 * 120.00279 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.68136 * 37.01252 * 11 10 8 13 13 C 1.55475 * 110.60770 * 160.15293 * 11 10 8 14 14 C 1.55848 * 103.32492 * 118.41867 * 13 11 10 15 15 H 1.08998 * 116.12899 * 159.23369 * 14 13 11 16 16 C 1.56854 * 105.77510 * 288.56084 * 14 13 11 17 17 C 1.54858 * 103.35524 * 71.45566 * 16 14 13 18 18 C 1.55837 * 110.62408 * 274.02727 * 11 10 8 19 19 H 1.09003 * 115.56577 * 82.69509 * 18 11 10 20 20 N 1.50229 * 101.05130 * 33.01999 * 14 13 11 21 21 C 1.36946 * 130.83735 * 126.07020 * 20 14 13 22 22 H 1.08001 * 119.99777 * 179.66189 * 21 20 14 23 23 C 1.38805 * 119.99877 * 359.66218 * 21 20 14 24 24 N 1.31618 * 120.00131 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00109 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.46967 * 89.99591 * 25 23 21 27 27 H 1.48497 * 109.47044 * 210.00236 * 25 23 21 28 28 H 1.48508 * 109.46579 * 329.99943 * 25 23 21 29 29 C 1.40255 * 120.27358 * 359.47041 * 7 6 5 30 30 C 1.36261 * 120.45247 * 0.25625 * 29 7 6 31 31 C 1.37271 * 126.65509 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47137 * 270.00471 * 1 2 3 33 33 H 1.08996 * 109.46695 * 30.00556 * 1 2 3 34 34 H 1.08997 * 109.46856 * 150.00227 * 1 2 3 35 35 H 1.08004 * 120.21531 * 359.94447 * 6 5 4 36 36 H 0.96991 * 119.99736 * 359.97438 * 10 8 7 37 37 H 1.09001 * 110.61424 * 0.02562 * 13 11 10 38 38 H 1.09004 * 110.75532 * 236.89958 * 13 11 10 39 39 H 1.09000 * 110.43789 * 313.10823 * 16 14 13 40 40 H 1.08996 * 111.04377 * 190.09588 * 16 14 13 41 41 H 1.08999 * 110.63002 * 241.78564 * 17 16 14 42 42 H 1.08996 * 110.76143 * 118.83089 * 17 16 14 43 43 H 0.97006 * 120.00033 * 179.97438 * 24 23 21 44 44 H 1.08002 * 119.77139 * 180.27572 * 29 7 6 45 45 H 1.07999 * 119.92425 * 179.97438 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3023 1.1249 0.0000 4 7 3.5315 0.7455 0.0005 5 6 3.6019 -0.6069 0.0015 6 6 4.6717 -1.5067 0.0077 7 6 4.4185 -2.8722 0.0027 8 6 5.5439 -3.8290 0.0036 9 8 6.6891 -3.4205 0.0037 10 7 5.3014 -5.1548 0.0045 11 6 6.4176 -6.1037 0.0059 12 1 7.2379 -5.7322 0.6201 13 6 5.9476 -7.5006 0.5007 14 6 6.2161 -8.4249 -0.7250 15 1 6.2965 -9.4912 -0.5137 16 6 5.1417 -8.0326 -1.7983 17 6 5.6125 -6.6393 -2.2832 18 6 6.9032 -6.3823 -1.4484 19 1 7.5927 -5.6469 -1.8631 20 7 7.4396 -7.7788 -1.3103 21 6 8.6647 -8.3029 -1.6263 22 1 9.4296 -7.6697 -2.0511 23 6 8.9234 -9.6478 -1.4006 24 7 7.9911 -10.4196 -0.8834 25 14 10.5948 -10.3626 -1.8309 26 1 11.4991 -10.2473 -0.6588 27 1 10.4415 -11.7929 -2.1992 28 1 11.1723 -9.6154 -2.9771 29 6 3.0987 -3.3466 0.0027 30 6 2.0515 -2.4748 0.0024 31 6 2.2845 -1.1013 0.0005 32 1 -0.3633 0.0001 1.0277 33 1 -0.3632 0.8899 -0.5139 34 1 -0.3633 -0.8900 -0.5138 35 1 5.6884 -1.1423 0.0122 36 1 4.3879 -5.4806 0.0048 37 1 4.8851 -7.4843 0.7434 38 1 6.5344 -7.8234 1.3608 39 1 4.1540 -7.9667 -1.3419 40 1 5.1350 -8.7443 -2.6238 41 1 4.8585 -5.8824 -2.0671 42 1 5.8416 -6.6580 -3.3486 43 1 8.1717 -11.3596 -0.7260 44 1 2.9111 -4.4102 0.0033 45 1 1.0385 -2.8494 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095622381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:05 Heat of formation + Delta-G solvation = 113.139607 kcal Electronic energy + Delta-G solvation = -29224.743859 eV Core-core repulsion = 25245.030368 eV Total energy + Delta-G solvation = -3979.713492 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.18045 -41.49574 -40.00765 -38.11276 -35.75904 -35.50131 -34.22050 -31.85492 -31.68633 -30.94132 -30.55516 -29.09018 -28.41081 -26.29621 -25.28473 -24.37584 -22.85161 -22.25730 -22.03079 -21.24064 -20.14041 -19.45259 -18.77775 -18.40406 -17.39668 -17.19176 -17.17588 -16.77144 -16.41403 -15.97835 -15.87335 -15.34097 -15.24610 -15.06971 -14.38611 -14.17833 -14.03878 -13.93896 -13.77223 -13.48074 -13.44348 -13.17425 -13.04571 -12.85359 -12.76823 -12.71925 -12.55849 -12.31410 -11.97264 -11.87629 -11.84297 -11.70251 -11.50681 -11.18929 -11.04931 -10.89693 -10.76713 -10.11927 -9.93550 -9.40681 -8.81987 -7.77523 -5.15934 -0.65797 -0.22528 1.07180 1.10627 1.47227 1.48361 1.56178 1.76280 2.07940 2.51474 2.69060 2.97494 3.35455 3.37535 3.50660 3.55218 3.72918 3.87141 3.97564 4.01961 4.14142 4.20058 4.29820 4.40598 4.46505 4.49234 4.54546 4.65867 4.68981 4.76221 4.80206 4.86340 4.87576 5.02261 5.09691 5.12401 5.13497 5.20868 5.26320 5.36477 5.39616 5.52001 5.58101 5.63478 5.79747 5.93355 6.32390 6.63330 6.82571 7.09062 7.29044 7.72056 8.57998 9.28981 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029724 B = 0.002314 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.783407 B =12095.988905 C =12613.283460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.385 5.385 3 N -0.031 5.031 4 N -0.247 5.247 5 C -0.050 4.050 6 C 0.013 3.987 7 C -0.143 4.143 8 C 0.557 3.443 9 O -0.584 6.584 10 N -0.686 5.686 11 C 0.148 3.852 12 H 0.053 0.947 13 C -0.122 4.122 14 C 0.137 3.863 15 H 0.120 0.880 16 C -0.125 4.125 17 C -0.116 4.116 18 C 0.116 3.884 19 H 0.061 0.939 20 N -0.620 5.620 21 C -0.223 4.223 22 H 0.068 0.932 23 C -0.062 4.062 24 N -0.942 5.942 25 Si 0.973 3.027 26 H -0.290 1.290 27 H -0.291 1.291 28 H -0.278 1.278 29 C -0.033 4.033 30 C -0.103 4.103 31 C 0.100 3.900 32 H 0.102 0.898 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.416 0.584 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.090 0.910 42 H 0.038 0.962 43 H 0.249 0.751 44 H 0.181 0.819 45 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.343 14.330 3.233 28.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.011 5.011 4 N -0.126 5.126 5 C -0.175 4.175 6 C -0.011 4.011 7 C -0.149 4.149 8 C 0.346 3.654 9 O -0.465 6.465 10 N -0.339 5.339 11 C 0.040 3.960 12 H 0.072 0.928 13 C -0.162 4.162 14 C 0.031 3.969 15 H 0.137 0.863 16 C -0.164 4.164 17 C -0.155 4.155 18 C 0.008 3.992 19 H 0.079 0.921 20 N -0.342 5.342 21 C -0.352 4.352 22 H 0.086 0.914 23 C -0.255 4.255 24 N -0.592 5.592 25 Si 0.802 3.198 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.055 4.055 30 C -0.125 4.125 31 C -0.023 4.023 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.143 0.857 35 H 0.149 0.851 36 H 0.256 0.744 37 H 0.122 0.878 38 H 0.066 0.934 39 H 0.112 0.888 40 H 0.052 0.948 41 H 0.109 0.891 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.198 0.802 45 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.390 15.946 3.200 28.488 hybrid contribution 1.327 -1.265 -0.308 1.859 sum -22.063 14.680 2.891 26.658 Atomic orbital electron populations 1.22581 0.69470 1.07442 1.06077 1.50527 1.09451 1.02442 1.55603 1.81535 0.94159 1.09081 1.16334 1.74840 1.12170 1.11601 1.13943 1.19960 0.94479 0.89980 1.13042 1.20469 0.97945 0.90876 0.91799 1.19574 0.94328 0.91985 1.09034 1.18434 0.88303 0.82922 0.75769 1.90797 1.24548 1.79305 1.51859 1.45771 1.10386 1.04370 1.73378 1.22210 0.88166 0.88570 0.97009 0.92849 1.23192 1.01352 0.93130 0.98498 1.23909 0.83625 0.98890 0.90501 0.86283 1.23111 0.98925 0.95556 0.98782 1.22803 0.97058 0.97631 0.98020 1.23342 0.94077 0.86907 0.94900 0.92099 1.46755 1.10471 1.04614 1.72336 1.19268 0.89391 0.92922 1.33621 0.91434 1.25356 1.01179 0.96375 1.02616 1.69653 1.33164 1.05237 1.51108 0.85155 0.79773 0.77266 0.77595 1.21739 1.21685 1.20376 1.21291 0.88929 1.02173 0.93133 1.20178 1.02572 0.86091 1.03616 1.19847 0.89877 0.91937 1.00622 0.88000 0.87514 0.85662 0.85061 0.74408 0.87762 0.93402 0.88825 0.94785 0.89125 0.94295 0.94147 0.80189 0.79506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.22 11.52 127.77 1.47 1.69 16 2 N -0.39 -5.71 4.11 -360.93 -1.48 -7.19 16 3 N -0.03 -0.72 13.72 37.02 0.51 -0.21 16 4 N -0.25 -6.75 12.40 -52.21 -0.65 -7.39 16 5 C -0.05 -1.20 7.26 39.57 0.29 -0.91 16 6 C 0.01 0.31 9.64 22.80 0.22 0.53 16 7 C -0.14 -2.97 5.87 -20.13 -0.12 -3.09 16 8 C 0.56 15.60 7.76 86.75 0.67 16.28 16 9 O -0.58 -22.60 16.05 -3.97 -0.06 -22.66 16 10 N -0.69 -16.63 3.61 -436.86 -1.58 -18.21 16 11 C 0.15 5.11 3.10 46.82 0.15 5.25 16 12 H 0.05 2.21 7.71 -2.39 -0.02 2.19 16 13 C -0.12 -4.12 6.25 32.43 0.20 -3.92 16 14 C 0.14 5.81 4.72 46.60 0.22 6.03 16 15 H 0.12 6.01 5.52 -2.39 -0.01 6.00 16 16 C -0.12 -4.20 6.50 32.58 0.21 -3.99 16 17 C -0.12 -3.81 6.34 32.21 0.20 -3.61 16 18 C 0.12 4.73 5.29 46.22 0.24 4.98 16 19 H 0.06 2.74 8.14 -2.39 -0.02 2.72 16 20 N -0.62 -30.81 2.97 -613.35 -1.82 -32.63 16 21 C -0.22 -12.58 10.59 84.03 0.89 -11.69 16 22 H 0.07 3.82 7.83 -2.91 -0.02 3.79 16 23 C -0.06 -3.50 5.50 84.86 0.47 -3.04 16 24 N -0.94 -53.90 10.46 21.65 0.23 -53.67 16 25 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 28 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 29 C -0.03 -0.36 9.46 22.30 0.21 -0.15 16 30 C -0.10 -0.89 9.97 22.07 0.22 -0.67 16 31 C 0.10 1.63 6.93 39.15 0.27 1.91 16 32 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 33 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.13 -0.42 8.14 -2.39 -0.02 -0.44 16 35 H 0.13 3.68 7.62 -2.91 -0.02 3.66 16 36 H 0.42 6.23 6.05 -92.71 -0.56 5.67 16 37 H 0.10 2.46 7.41 -2.39 -0.02 2.44 16 38 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.09 2.24 7.88 -2.39 -0.02 2.22 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 41 H 0.09 2.23 6.56 -2.39 -0.02 2.22 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.25 13.87 8.31 -92.70 -0.77 13.10 16 44 H 0.18 0.57 6.36 -2.91 -0.02 0.55 16 45 H 0.19 -0.16 8.06 -2.91 -0.02 -0.18 16 Total: -1.00 -81.33 367.20 3.47 -77.86 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.48 Total: 10.33 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 5.82 Total: 5.60 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -4.79 Total: -119.31 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.06 Total: -22.66 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -81.33 3.47 -77.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095622381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.996 kcal (2) G-P(sol) polarization free energy of solvation -81.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds