Wall clock time and date at job start Wed Apr 1 2020 01:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39806 * 125.33763 * 2 1 4 4 C 1.30200 * 110.13128 * 180.02562 * 3 2 1 5 5 C 1.45985 * 107.58415 * 0.02562 * 4 3 2 6 6 C 1.39656 * 134.11535 * 179.97438 * 5 4 3 7 7 C 1.39507 * 117.94790 * 180.02562 * 6 5 4 8 8 C 1.47681 * 120.40835 * 180.02562 * 7 6 5 9 9 O 1.21577 * 120.00390 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00002 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00477 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.55717 * 36.95447 * 11 10 8 13 13 C 1.54851 * 110.62892 * 160.03267 * 11 10 8 14 14 C 1.55849 * 103.44521 * 118.49544 * 13 11 10 15 15 H 1.08998 * 115.55792 * 158.81158 * 14 13 11 16 16 C 1.55848 * 105.73497 * 287.98630 * 14 13 11 17 17 C 1.57708 * 103.12413 * 70.91368 * 16 14 13 18 18 C 1.55844 * 102.68087 * 1.20097 * 17 16 14 19 19 H 1.08998 * 115.56229 * 158.49412 * 18 17 16 20 20 N 1.50237 * 101.75369 * 32.09922 * 18 17 16 21 21 C 1.36932 * 130.84070 * 125.86367 * 20 18 17 22 22 H 1.08006 * 119.99746 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00537 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99800 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00447 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46639 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46908 * 119.99924 * 25 23 21 28 28 H 1.48502 * 109.47180 * 240.00235 * 25 23 21 29 29 C 1.40182 * 119.17905 * 0.02562 * 7 6 5 30 30 N 1.31185 * 121.37874 * 359.97438 * 29 7 6 31 31 C 1.32936 * 121.84445 * 0.02562 * 30 29 7 32 32 H 1.09006 * 109.47138 * 269.97357 * 1 2 3 33 33 H 1.09008 * 109.47544 * 29.97437 * 1 2 3 34 34 H 1.08999 * 109.47413 * 149.97791 * 1 2 3 35 35 H 1.07995 * 126.20863 * 179.97438 * 4 3 2 36 36 H 1.07999 * 121.02475 * 0.03695 * 6 5 4 37 37 H 0.96999 * 120.00150 * 0.02562 * 10 8 7 38 38 H 1.09002 * 110.62296 * 236.97932 * 13 11 10 39 39 H 1.08997 * 110.62766 * 359.97438 * 13 11 10 40 40 H 1.08997 * 110.62032 * 190.50295 * 16 14 13 41 41 H 1.08994 * 110.62934 * 313.52111 * 16 14 13 42 42 H 1.09004 * 111.90712 * 242.53265 * 17 16 14 43 43 H 1.08998 * 110.06543 * 119.01302 * 17 16 14 44 44 H 0.96998 * 120.00597 * 180.02562 * 24 23 21 45 45 H 1.07999 * 119.30869 * 180.26652 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2736 1.1405 0.0000 4 6 3.5300 0.7990 -0.0005 5 6 3.5906 -0.6596 -0.0016 6 6 4.6327 -1.5893 -0.0029 7 6 4.3001 -2.9442 -0.0041 8 6 5.3589 -3.9738 -0.0050 9 8 6.5288 -3.6428 -0.0052 10 7 5.0283 -5.2803 -0.0057 11 6 6.0786 -6.3017 -0.0060 12 1 6.9215 -5.9842 0.6078 13 6 5.5199 -7.6588 0.4882 14 6 5.7244 -8.6020 -0.7355 15 1 5.7393 -9.6683 -0.5100 16 6 4.6734 -8.1533 -1.7952 17 6 5.2295 -6.7608 -2.2838 18 6 6.5444 -6.6098 -1.4610 19 1 7.2816 -5.9215 -1.8745 20 7 6.9864 -8.0393 -1.3253 21 6 8.1739 -8.6433 -1.6413 22 1 8.9799 -8.0616 -2.0639 23 6 8.3424 -10.0028 -1.4177 24 7 7.3604 -10.7116 -0.9022 25 14 9.9622 -10.8269 -1.8495 26 1 10.8965 -9.8182 -2.4108 27 1 10.5555 -11.4238 -0.6260 28 1 9.7225 -11.8936 -2.8545 29 6 2.9486 -3.3162 -0.0045 30 7 1.9928 -2.4177 -0.0033 31 6 2.2553 -1.1145 -0.0021 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3634 0.8903 -0.5135 34 1 -0.3634 -0.8898 -0.5142 35 1 4.3742 1.4725 -0.0011 36 1 5.6642 -1.2693 -0.0028 37 1 4.0950 -5.5445 -0.0060 38 1 6.0863 -8.0170 1.3479 39 1 4.4616 -7.5718 0.7339 40 1 4.6187 -8.8744 -2.6108 41 1 3.6953 -8.0196 -1.3333 42 1 4.5405 -5.9464 -2.0596 43 1 5.4468 -6.7985 -3.3512 44 1 7.4781 -11.6616 -0.7455 45 1 2.6888 -4.3645 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096237837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:42 Heat of formation + Delta-G solvation = 127.077253 kcal Electronic energy + Delta-G solvation = -29238.786420 eV Core-core repulsion = 25259.677310 eV Total energy + Delta-G solvation = -3979.109110 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93407 -40.11843 -38.73828 -37.67749 -34.24038 -34.00912 -32.38153 -31.96126 -30.69892 -29.14715 -29.01395 -27.76464 -27.02869 -24.52707 -24.19398 -23.69599 -21.47510 -21.29004 -20.80253 -19.53792 -18.67116 -18.08881 -17.99504 -17.05165 -16.59786 -16.22936 -15.91150 -15.18091 -15.06037 -14.81263 -14.53341 -14.24267 -13.95801 -13.90232 -13.63088 -13.53821 -13.34244 -12.91292 -12.63172 -12.34153 -12.26088 -11.75841 -11.50975 -11.49191 -11.08210 -10.90629 -10.89940 -10.83520 -10.78422 -10.22841 -10.20953 -10.05775 -9.80261 -9.61037 -9.43418 -9.41960 -9.26484 -8.94850 -8.72399 -8.48195 -6.91706 -5.73188 -3.11032 0.41129 0.56369 1.73399 2.04499 2.84681 3.28498 3.39703 3.45713 3.47648 3.65996 3.72195 3.89865 4.21504 4.44139 4.50694 4.56128 4.78021 4.84175 4.95044 5.03986 5.10152 5.19874 5.22862 5.38376 5.52612 5.72802 5.79623 5.82394 5.85012 5.88458 6.05399 6.07962 6.12636 6.28552 6.31153 6.36163 6.53291 6.58093 6.64551 6.78774 6.95103 6.98469 7.00149 7.26036 7.47400 7.52296 7.69726 7.80464 8.16389 8.40017 9.10276 9.72792 10.52894 11.36440 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029671 B = 0.002327 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.467529 B =12030.571210 C =12553.170964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.394 5.394 3 N -0.242 5.242 4 C 0.097 3.903 5 C -0.238 4.238 6 C 0.071 3.929 7 C -0.226 4.226 8 C 0.564 3.436 9 O -0.538 6.538 10 N -0.706 5.706 11 C 0.128 3.872 12 H 0.084 0.916 13 C -0.140 4.140 14 C 0.153 3.847 15 H 0.154 0.846 16 C -0.135 4.135 17 C -0.133 4.133 18 C 0.128 3.872 19 H 0.085 0.915 20 N -0.589 5.589 21 C -0.208 4.208 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.924 5.924 25 Si 0.916 3.084 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.205 3.795 30 N -0.505 5.505 31 C 0.327 3.673 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.206 0.794 36 H 0.156 0.844 37 H 0.393 0.607 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.253 0.747 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.056 18.806 3.017 23.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.184 5.184 3 N -0.054 5.054 4 C -0.102 4.102 5 C -0.248 4.248 6 C 0.042 3.958 7 C -0.234 4.234 8 C 0.350 3.650 9 O -0.416 6.416 10 N -0.357 5.357 11 C 0.023 3.977 12 H 0.102 0.898 13 C -0.180 4.180 14 C 0.046 3.954 15 H 0.171 0.829 16 C -0.174 4.174 17 C -0.173 4.173 18 C 0.019 3.981 19 H 0.103 0.897 20 N -0.310 5.310 21 C -0.336 4.336 22 H 0.098 0.902 23 C -0.208 4.208 24 N -0.572 5.572 25 Si 0.747 3.253 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.034 3.966 30 N -0.220 5.220 31 C 0.088 3.912 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.222 0.778 36 H 0.173 0.827 37 H 0.228 0.772 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.921 19.569 2.991 24.790 hybrid contribution 1.541 -0.884 -0.233 1.792 sum -13.380 18.686 2.758 23.147 Atomic orbital electron populations 1.21850 0.73200 1.04584 1.03397 1.48115 1.06427 1.00034 1.63837 1.76740 1.02756 1.07370 1.18539 1.25157 0.94877 0.92593 0.97595 1.20475 0.94041 0.94801 1.15533 1.21196 0.99361 0.90041 0.85193 1.20799 0.95042 0.94747 1.12771 1.17778 0.87872 0.82408 0.76972 1.90790 1.19057 1.81464 1.50296 1.46167 1.10361 1.05366 1.73760 1.22701 0.89081 0.86259 0.99697 0.89764 1.23287 0.98499 0.95155 1.01075 1.23752 0.83416 1.00160 0.88078 0.82923 1.23513 0.97475 0.96002 1.00427 1.23415 0.97927 0.96604 0.99365 1.23166 0.93781 0.88361 0.92754 0.89689 1.46472 1.11388 1.01666 1.71448 1.19110 0.89117 0.91363 1.34012 0.90240 1.24696 0.98166 0.96096 1.01866 1.69440 1.30779 1.06742 1.50238 0.85958 0.82560 0.79236 0.77527 1.20541 1.21796 1.21840 1.22890 0.86936 0.98307 0.88469 1.66672 1.37375 0.98482 1.19423 1.19125 0.88689 0.88176 0.95237 0.90970 0.89329 0.89010 0.77769 0.82689 0.77159 0.91451 0.92668 0.92437 0.93765 0.92838 0.93127 0.93624 0.81401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.73 11.43 59.84 0.68 1.41 16 2 N -0.39 -4.05 4.03 -67.17 -0.27 -4.32 16 3 N -0.24 -2.45 12.39 31.87 0.39 -2.05 16 4 C 0.10 0.82 12.30 -15.14 -0.19 0.64 16 5 C -0.24 -2.53 6.36 -105.19 -0.67 -3.20 16 6 C 0.07 0.77 9.76 -38.58 -0.38 0.40 16 7 C -0.23 -2.66 5.89 -104.84 -0.62 -3.27 16 8 C 0.56 8.18 7.77 -12.41 -0.10 8.09 16 9 O -0.54 -9.79 16.13 5.30 0.09 -9.71 16 10 N -0.71 -9.76 3.55 -52.39 -0.19 -9.94 16 11 C 0.13 2.28 3.08 -65.43 -0.20 2.08 16 12 H 0.08 1.69 7.70 -51.93 -0.40 1.29 16 13 C -0.14 -2.54 6.22 -24.23 -0.15 -2.69 16 14 C 0.15 3.32 4.67 -62.80 -0.29 3.03 16 15 H 0.15 3.84 5.52 -51.93 -0.29 3.55 16 16 C -0.13 -2.51 6.58 -22.64 -0.15 -2.65 16 17 C -0.13 -2.38 6.48 -22.64 -0.15 -2.53 16 18 C 0.13 2.62 5.30 -62.80 -0.33 2.28 16 19 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 20 N -0.59 -14.34 2.99 -145.81 -0.44 -14.77 16 21 C -0.21 -5.65 10.59 -15.06 -0.16 -5.81 16 22 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.92 -25.82 10.46 55.49 0.58 -25.24 16 25 Si 0.92 21.84 29.55 -169.99 -5.02 16.81 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 C 0.20 2.12 10.69 -17.10 -0.18 1.94 16 30 N -0.51 -5.77 10.37 -12.03 -0.12 -5.90 16 31 C 0.33 3.77 7.96 -156.09 -1.24 2.53 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.21 0.89 8.06 -52.49 -0.42 0.46 16 36 H 0.16 1.53 7.72 -52.49 -0.41 1.12 16 37 H 0.39 4.29 6.06 -40.82 -0.25 4.05 16 38 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.05 0.82 7.38 -51.93 -0.38 0.43 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.04 0.68 7.85 -51.93 -0.41 0.27 16 42 H 0.05 0.80 6.47 -51.93 -0.34 0.47 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 45 H 0.17 1.28 6.39 -52.49 -0.34 0.95 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -33.23 367.63 -9.38 -42.61 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -5.73 Total: 5.18 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -4.22 Total: 1.79 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.04 Total: -62.22 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.23 -9.38 -42.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096237837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.690 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds