Wall clock time and date at job start Wed Apr 1 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.39806 * 125.33763 * 2 1 4 4 C 1.30200 * 110.13128 * 180.02562 * 3 2 1 5 5 C 1.45985 * 107.58415 * 0.02562 * 4 3 2 6 6 C 1.39656 * 134.11535 * 179.97438 * 5 4 3 7 7 C 1.39507 * 117.94790 * 180.02562 * 6 5 4 8 8 C 1.47681 * 120.40835 * 180.02562 * 7 6 5 9 9 O 1.21577 * 120.00390 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00002 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00477 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.55717 * 36.95447 * 11 10 8 13 13 C 1.54851 * 110.62892 * 160.03267 * 11 10 8 14 14 C 1.55849 * 103.44521 * 118.49544 * 13 11 10 15 15 H 1.08998 * 115.55792 * 158.81158 * 14 13 11 16 16 C 1.55848 * 105.73497 * 287.98630 * 14 13 11 17 17 C 1.57708 * 103.12413 * 70.91368 * 16 14 13 18 18 C 1.55844 * 102.68087 * 1.20097 * 17 16 14 19 19 H 1.08998 * 115.56229 * 158.49412 * 18 17 16 20 20 N 1.50237 * 101.75369 * 32.09922 * 18 17 16 21 21 C 1.36932 * 130.84070 * 125.86367 * 20 18 17 22 22 H 1.08006 * 119.99746 * 0.02562 * 21 20 18 23 23 C 1.38811 * 120.00537 * 179.97438 * 21 20 18 24 24 N 1.31619 * 119.99800 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00447 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46639 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46908 * 119.99924 * 25 23 21 28 28 H 1.48502 * 109.47180 * 240.00235 * 25 23 21 29 29 C 1.40182 * 119.17905 * 0.02562 * 7 6 5 30 30 N 1.31185 * 121.37874 * 359.97438 * 29 7 6 31 31 C 1.32936 * 121.84445 * 0.02562 * 30 29 7 32 32 H 1.09006 * 109.47138 * 269.97357 * 1 2 3 33 33 H 1.09008 * 109.47544 * 29.97437 * 1 2 3 34 34 H 1.08999 * 109.47413 * 149.97791 * 1 2 3 35 35 H 1.07995 * 126.20863 * 179.97438 * 4 3 2 36 36 H 1.07999 * 121.02475 * 0.03695 * 6 5 4 37 37 H 0.96999 * 120.00150 * 0.02562 * 10 8 7 38 38 H 1.09002 * 110.62296 * 236.97932 * 13 11 10 39 39 H 1.08997 * 110.62766 * 359.97438 * 13 11 10 40 40 H 1.08997 * 110.62032 * 190.50295 * 16 14 13 41 41 H 1.08994 * 110.62934 * 313.52111 * 16 14 13 42 42 H 1.09004 * 111.90712 * 242.53265 * 17 16 14 43 43 H 1.08998 * 110.06543 * 119.01302 * 17 16 14 44 44 H 0.96998 * 120.00597 * 180.02562 * 24 23 21 45 45 H 1.07999 * 119.30869 * 180.26652 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2736 1.1405 0.0000 4 6 3.5300 0.7990 -0.0005 5 6 3.5906 -0.6596 -0.0016 6 6 4.6327 -1.5893 -0.0029 7 6 4.3001 -2.9442 -0.0041 8 6 5.3589 -3.9738 -0.0050 9 8 6.5288 -3.6428 -0.0052 10 7 5.0283 -5.2803 -0.0057 11 6 6.0786 -6.3017 -0.0060 12 1 6.9215 -5.9842 0.6078 13 6 5.5199 -7.6588 0.4882 14 6 5.7244 -8.6020 -0.7355 15 1 5.7393 -9.6683 -0.5100 16 6 4.6734 -8.1533 -1.7952 17 6 5.2295 -6.7608 -2.2838 18 6 6.5444 -6.6098 -1.4610 19 1 7.2816 -5.9215 -1.8745 20 7 6.9864 -8.0393 -1.3253 21 6 8.1739 -8.6433 -1.6413 22 1 8.9799 -8.0616 -2.0639 23 6 8.3424 -10.0028 -1.4177 24 7 7.3604 -10.7116 -0.9022 25 14 9.9622 -10.8269 -1.8495 26 1 10.8965 -9.8182 -2.4108 27 1 10.5555 -11.4238 -0.6260 28 1 9.7225 -11.8936 -2.8545 29 6 2.9486 -3.3162 -0.0045 30 7 1.9928 -2.4177 -0.0033 31 6 2.2553 -1.1145 -0.0021 32 1 -0.3634 -0.0005 1.0277 33 1 -0.3634 0.8903 -0.5135 34 1 -0.3634 -0.8898 -0.5142 35 1 4.3742 1.4725 -0.0011 36 1 5.6642 -1.2693 -0.0028 37 1 4.0950 -5.5445 -0.0060 38 1 6.0863 -8.0170 1.3479 39 1 4.4616 -7.5718 0.7339 40 1 4.6187 -8.8744 -2.6108 41 1 3.6953 -8.0196 -1.3333 42 1 4.5405 -5.9464 -2.0596 43 1 5.4468 -6.7985 -3.3512 44 1 7.4781 -11.6616 -0.7455 45 1 2.6888 -4.3645 -0.0011 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096237837.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:41 Heat of formation + Delta-G solvation = 106.388790 kcal Electronic energy + Delta-G solvation = -29239.683539 eV Core-core repulsion = 25259.677310 eV Total energy + Delta-G solvation = -3980.006229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.69555 -41.42988 -39.97754 -38.69137 -35.51751 -34.89084 -34.20077 -32.77301 -31.60531 -30.87887 -30.53038 -29.15332 -27.80821 -26.16937 -25.05628 -24.78166 -22.86770 -22.04183 -21.97190 -21.19434 -20.16736 -19.22814 -18.78653 -18.64247 -17.61213 -17.00496 -16.93839 -16.74164 -16.37431 -16.24165 -15.86581 -15.33030 -15.25978 -14.90352 -14.58221 -14.35913 -14.15604 -14.02759 -13.86574 -13.43483 -13.41867 -13.29626 -13.14958 -12.86439 -12.77947 -12.58066 -12.28542 -12.23561 -11.95710 -11.85761 -11.58970 -11.48504 -11.29855 -11.09456 -10.99178 -10.77619 -10.54417 -10.20918 -9.99780 -9.39845 -8.81946 -7.77118 -5.15846 -0.34544 -0.29594 1.08045 1.35706 1.47588 1.48340 1.57789 1.82875 2.12110 2.52026 2.74690 3.03180 3.19373 3.36475 3.50782 3.53467 3.67861 3.79678 3.92945 4.02115 4.15176 4.21785 4.27680 4.37864 4.39779 4.43140 4.49710 4.55231 4.66964 4.67206 4.76023 4.85206 4.92950 5.03054 5.09585 5.12538 5.20088 5.25815 5.33824 5.37082 5.50589 5.58046 5.66937 5.78800 5.92259 6.28656 6.31559 6.61091 6.71076 7.08810 7.27976 7.72266 8.58250 9.29689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029671 B = 0.002327 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.467529 B =12030.571210 C =12553.170964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.400 5.400 3 N -0.262 5.262 4 C 0.108 3.892 5 C -0.251 4.251 6 C 0.075 3.925 7 C -0.238 4.238 8 C 0.570 3.430 9 O -0.580 6.580 10 N -0.692 5.692 11 C 0.149 3.851 12 H 0.057 0.943 13 C -0.125 4.125 14 C 0.137 3.863 15 H 0.119 0.881 16 C -0.124 4.124 17 C -0.119 4.119 18 C 0.118 3.882 19 H 0.066 0.934 20 N -0.618 5.618 21 C -0.220 4.220 22 H 0.071 0.929 23 C -0.064 4.064 24 N -0.943 5.943 25 Si 0.974 3.026 26 H -0.274 1.274 27 H -0.293 1.293 28 H -0.292 1.292 29 C 0.213 3.787 30 N -0.515 5.515 31 C 0.311 3.689 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.242 0.758 36 H 0.161 0.839 37 H 0.413 0.587 38 H 0.048 0.952 39 H 0.100 0.900 40 H 0.035 0.965 41 H 0.089 0.911 42 H 0.091 0.909 43 H 0.039 0.961 44 H 0.248 0.752 45 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.209 20.541 3.219 26.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.189 5.189 3 N -0.074 5.074 4 C -0.090 4.090 5 C -0.262 4.262 6 C 0.047 3.953 7 C -0.246 4.246 8 C 0.358 3.642 9 O -0.461 6.461 10 N -0.344 5.344 11 C 0.042 3.958 12 H 0.075 0.925 13 C -0.165 4.165 14 C 0.031 3.969 15 H 0.136 0.864 16 C -0.163 4.163 17 C -0.158 4.158 18 C 0.010 3.990 19 H 0.084 0.916 20 N -0.340 5.340 21 C -0.350 4.350 22 H 0.088 0.912 23 C -0.257 4.257 24 N -0.593 5.593 25 Si 0.803 3.197 26 H -0.199 1.199 27 H -0.220 1.220 28 H -0.220 1.220 29 C 0.042 3.958 30 N -0.230 5.230 31 C 0.071 3.929 32 H 0.100 0.900 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.258 0.742 36 H 0.178 0.822 37 H 0.251 0.749 38 H 0.067 0.933 39 H 0.118 0.882 40 H 0.054 0.946 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -17.151 21.354 3.194 27.575 hybrid contribution 2.183 -1.293 -0.291 2.554 sum -14.968 20.061 2.903 25.198 Atomic orbital electron populations 1.22096 0.71604 1.05570 1.04386 1.48471 1.07516 0.99710 1.63227 1.76746 1.03400 1.07635 1.19592 1.25798 0.95421 0.92179 0.95623 1.20661 0.93637 0.95826 1.16028 1.21313 0.99835 0.90015 0.84163 1.20528 0.94785 0.94122 1.15142 1.18109 0.87830 0.82709 0.75580 1.90780 1.21093 1.82068 1.52117 1.45848 1.10430 1.04502 1.73649 1.22110 0.89437 0.87083 0.97197 0.92485 1.23117 1.00943 0.93804 0.98645 1.23680 0.83517 0.99230 0.90498 0.86376 1.23401 0.98589 0.95479 0.98875 1.23330 0.96935 0.97376 0.98141 1.23311 0.94589 0.86284 0.94846 0.91628 1.46729 1.11471 1.03651 1.72145 1.19320 0.90332 0.91804 1.33498 0.91158 1.25381 1.00978 0.96663 1.02670 1.69669 1.31953 1.06433 1.51262 0.85067 0.79558 0.78132 0.76925 1.19934 1.21973 1.21956 1.23276 0.85997 0.99471 0.87019 1.66756 1.37513 0.98591 1.20101 1.19469 0.89520 0.88644 0.95232 0.89961 0.87884 0.88535 0.74154 0.82179 0.74854 0.93332 0.88187 0.94622 0.89295 0.89119 0.94254 0.94202 0.78526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.15 11.43 127.77 1.46 2.61 16 2 N -0.40 -7.38 4.03 -366.44 -1.48 -8.86 16 3 N -0.26 -4.73 12.39 -53.07 -0.66 -5.39 16 4 C 0.11 1.57 12.30 86.94 1.07 2.64 16 5 C -0.25 -4.79 6.36 -20.24 -0.13 -4.92 16 6 C 0.08 1.50 9.76 22.92 0.22 1.73 16 7 C -0.24 -5.04 5.89 -20.00 -0.12 -5.16 16 8 C 0.57 15.51 7.77 86.74 0.67 16.18 16 9 O -0.58 -20.89 16.13 -3.96 -0.06 -20.95 16 10 N -0.69 -17.24 3.55 -437.92 -1.55 -18.79 16 11 C 0.15 5.15 3.08 46.61 0.14 5.29 16 12 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 13 C -0.13 -4.34 6.22 32.21 0.20 -4.14 16 14 C 0.14 5.92 4.67 46.23 0.22 6.13 16 15 H 0.12 6.06 5.52 -2.39 -0.01 6.05 16 16 C -0.12 -4.36 6.58 33.25 0.22 -4.14 16 17 C -0.12 -3.98 6.48 33.25 0.22 -3.76 16 18 C 0.12 4.79 5.30 46.23 0.25 5.03 16 19 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 20 N -0.62 -30.71 2.99 -615.23 -1.84 -32.54 16 21 C -0.22 -12.37 10.59 84.03 0.89 -11.48 16 22 H 0.07 3.93 7.83 -2.91 -0.02 3.90 16 23 C -0.06 -3.60 5.50 84.86 0.47 -3.14 16 24 N -0.94 -54.30 10.46 21.65 0.23 -54.07 16 25 Si 0.97 46.04 29.55 68.60 2.03 48.07 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 28 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 29 C 0.21 3.73 10.69 85.26 0.91 4.64 16 30 N -0.51 -10.36 10.37 -191.97 -1.99 -12.35 16 31 C 0.31 6.49 7.96 134.17 1.07 7.55 16 32 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.24 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.16 2.94 7.72 -2.91 -0.02 2.92 16 37 H 0.41 7.09 6.06 -92.71 -0.56 6.52 16 38 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.10 2.54 7.38 -2.39 -0.02 2.52 16 40 H 0.03 1.39 8.14 -2.39 -0.02 1.38 16 41 H 0.09 2.33 7.85 -2.39 -0.02 2.31 16 42 H 0.09 2.36 6.47 -2.39 -0.02 2.34 16 43 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.20 2.06 6.39 -2.91 -0.02 2.04 16 Total: -1.00 -75.48 367.63 2.91 -72.57 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.48 Total: 17.25 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 7.75 Total: 15.07 kcal Atomic # 7 Polarization: -124.71 SS G_CDS: -7.29 Total: -132.00 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.06 Total: -20.95 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -75.48 2.91 -72.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096237837.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.955 kcal (2) G-P(sol) polarization free energy of solvation -75.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds