Wall clock time and date at job start Wed Apr 1 2020 01:17:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.28818 * 125.94407 * 2 1 4 4 N 1.28639 * 111.79407 * 179.97438 * 3 2 1 5 5 C 1.34749 * 109.29286 * 0.02562 * 4 3 2 6 6 C 1.39908 * 134.59427 * 179.97438 * 5 4 3 7 7 C 1.36159 * 119.98268 * 180.02562 * 6 5 4 8 8 C 1.40251 * 120.55305 * 0.02562 * 7 6 5 9 9 C 1.47724 * 119.88081 * 179.97438 * 8 7 6 10 10 O 1.21571 * 119.99937 * 180.02562 * 9 8 7 11 11 N 1.34771 * 119.99657 * 0.02562 * 9 8 7 12 12 C 1.46500 * 119.99846 * 179.97438 * 11 9 8 13 13 H 1.09001 * 110.68338 * 37.05485 * 12 11 9 14 14 C 1.54856 * 110.62529 * 160.03665 * 12 11 9 15 15 C 1.55849 * 103.44282 * 118.49233 * 14 12 11 16 16 H 1.09003 * 116.12202 * 159.14845 * 15 14 12 17 17 C 1.55842 * 105.06580 * 288.17310 * 15 14 12 18 18 C 1.54855 * 103.44241 * 71.82410 * 17 15 14 19 19 C 1.55838 * 103.44560 * 0.02562 * 18 17 15 20 20 H 1.09005 * 116.13051 * 159.14744 * 19 18 17 21 21 N 1.50233 * 101.05331 * 32.93794 * 15 14 12 22 22 C 1.36936 * 130.83829 * 126.00757 * 21 15 14 23 23 H 1.08005 * 119.99907 * 180.02562 * 22 21 15 24 24 C 1.38808 * 120.00221 * 0.03295 * 22 21 15 25 25 N 1.31623 * 119.99765 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00224 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.46768 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.46941 * 119.99414 * 26 24 22 29 29 H 1.48496 * 109.47025 * 239.99977 * 26 24 22 30 30 C 1.39172 * 120.24363 * 0.25055 * 8 7 6 31 31 C 1.37359 * 125.94245 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.47149 * 269.99923 * 1 2 3 33 33 H 1.09002 * 109.47526 * 29.99864 * 1 2 3 34 34 H 1.09004 * 109.47360 * 149.99794 * 1 2 3 35 35 H 1.08002 * 120.00864 * 0.02562 * 6 5 4 36 36 H 1.07989 * 119.72380 * 180.02562 * 7 6 5 37 37 H 0.97003 * 120.00441 * 0.02562 * 11 9 8 38 38 H 1.08998 * 110.62641 * 236.97839 * 14 12 11 39 39 H 1.09004 * 110.62829 * 0.02562 * 14 12 11 40 40 H 1.08993 * 110.63141 * 190.31606 * 17 15 14 41 41 H 1.09004 * 110.62412 * 313.18157 * 17 15 14 42 42 H 1.09000 * 110.62966 * 241.51048 * 18 17 15 43 43 H 1.09005 * 110.62406 * 118.49368 * 18 17 15 44 44 H 0.97005 * 119.99781 * 180.02562 * 25 24 22 45 45 H 1.07995 * 120.24882 * 179.74309 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7284 0.0005 5 6 3.5893 -0.6136 0.0004 6 6 4.6696 -1.5027 0.0003 7 6 4.4456 -2.8457 -0.0004 8 6 3.1370 -3.3502 -0.0016 9 6 2.9111 -4.8101 -0.0030 10 8 1.7777 -5.2498 -0.0045 11 7 3.9615 -5.6545 -0.0025 12 6 3.7375 -7.1022 -0.0033 13 1 2.8749 -7.3580 -0.6185 14 6 5.0007 -7.8494 -0.4974 15 6 5.4047 -8.7265 0.7259 16 1 6.0395 -9.5862 0.5113 17 6 5.9658 -7.7219 1.7769 18 6 4.7027 -6.9747 2.2710 19 6 3.5503 -7.6301 1.4517 20 1 2.5472 -7.5244 1.8649 21 7 4.0579 -9.0371 1.3148 22 6 3.4729 -10.2345 1.6298 23 1 2.4792 -10.2554 2.0523 24 6 4.1571 -11.4213 1.4061 25 7 5.3680 -11.3958 0.8909 26 14 3.3593 -13.0547 1.8365 27 1 2.0062 -12.8120 2.3977 28 1 3.2459 -13.8879 0.6124 29 1 4.1920 -13.7626 2.8418 30 6 2.0504 -2.4806 -0.0073 31 6 2.2712 -1.1121 -0.0005 32 1 -0.3633 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3634 -0.8900 -0.5139 35 1 5.6810 -1.1237 0.0008 36 1 5.2825 -3.5281 -0.0001 37 1 4.8659 -5.3036 -0.0009 38 1 4.7644 -8.4757 -1.3576 39 1 5.7940 -7.1427 -0.7415 40 1 6.4437 -8.2537 2.5995 41 1 6.6665 -7.0295 1.3102 42 1 4.7748 -5.9100 2.0489 43 1 4.5542 -7.1361 3.3387 44 1 5.8460 -12.2253 0.7342 45 1 1.0428 -2.8690 -0.0124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096441345.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:09 Heat of formation + Delta-G solvation = 138.590701 kcal Electronic energy + Delta-G solvation = -29345.923626 eV Core-core repulsion = 25367.313777 eV Total energy + Delta-G solvation = -3978.609850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.49504 -40.30848 -38.84091 -37.39797 -35.21403 -34.12479 -32.42251 -31.15066 -31.02103 -29.30960 -29.05190 -28.30671 -27.59551 -24.94083 -24.04435 -23.78254 -21.49649 -21.46969 -20.95795 -19.62756 -18.70288 -18.46498 -18.00405 -17.11006 -17.05865 -16.41872 -16.03337 -15.17911 -14.94011 -14.82656 -14.59063 -14.25244 -14.02918 -13.96658 -13.81698 -13.61323 -13.27179 -12.48027 -12.45764 -12.35595 -12.16847 -12.02985 -11.79653 -11.53892 -11.14156 -11.07441 -11.03267 -10.95084 -10.92583 -10.87333 -10.25722 -10.10050 -9.96153 -9.80603 -9.44414 -9.31670 -9.29243 -8.96721 -8.72954 -8.53819 -6.94681 -5.75854 -3.13776 0.04535 0.84474 1.78399 1.83559 2.79672 3.20142 3.37684 3.43745 3.45663 3.56360 3.63427 4.04824 4.29060 4.41036 4.53030 4.54322 4.69030 4.70622 4.82988 4.97542 4.99356 5.17065 5.35169 5.48101 5.54481 5.66656 5.75239 5.80388 5.85348 5.89399 5.93797 6.02788 6.07727 6.09715 6.22066 6.26088 6.29757 6.49859 6.56267 6.61059 6.77189 6.92280 6.95807 7.23205 7.49753 7.65272 7.77539 7.96641 8.13749 8.33114 9.07648 9.70185 10.49921 11.33820 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.002390 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.094767 B =11711.603539 C =12336.125774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.316 5.316 3 N -0.018 5.018 4 N -0.258 5.258 5 C 0.025 3.975 6 C -0.054 4.054 7 C -0.090 4.090 8 C -0.095 4.095 9 C 0.554 3.446 10 O -0.536 6.536 11 N -0.701 5.701 12 C 0.127 3.873 13 H 0.084 0.916 14 C -0.141 4.141 15 C 0.154 3.846 16 H 0.155 0.845 17 C -0.138 4.138 18 C -0.131 4.131 19 C 0.128 3.872 20 H 0.086 0.914 21 N -0.589 5.589 22 C -0.209 4.209 23 H 0.080 0.920 24 C -0.012 4.012 25 N -0.923 5.923 26 Si 0.916 3.084 27 H -0.280 1.280 28 H -0.291 1.291 29 H -0.291 1.291 30 C -0.036 4.036 31 C 0.014 3.986 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.100 0.900 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.396 0.604 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.055 0.945 41 H 0.045 0.955 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.253 0.747 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 20.801 -3.124 21.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.116 5.116 3 N 0.001 4.999 4 N -0.132 5.132 5 C -0.101 4.101 6 C -0.077 4.077 7 C -0.112 4.112 8 C -0.102 4.102 9 C 0.339 3.661 10 O -0.414 6.414 11 N -0.352 5.352 12 C 0.021 3.979 13 H 0.102 0.898 14 C -0.180 4.180 15 C 0.047 3.953 16 H 0.172 0.828 17 C -0.177 4.177 18 C -0.170 4.170 19 C 0.019 3.981 20 H 0.104 0.896 21 N -0.310 5.310 22 C -0.337 4.337 23 H 0.098 0.902 24 C -0.208 4.208 25 N -0.571 5.571 26 Si 0.747 3.253 27 H -0.205 1.205 28 H -0.218 1.218 29 H -0.218 1.218 30 C -0.059 4.059 31 C -0.105 4.105 32 H 0.111 0.889 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.231 0.769 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.136 21.646 -3.097 22.254 hybrid contribution -0.233 -1.603 0.263 1.641 sum -4.369 20.042 -2.834 20.708 Atomic orbital electron populations 1.22300 0.71847 1.06153 1.05238 1.47127 1.08916 1.02985 1.52589 1.77988 0.96939 1.12349 1.12613 1.75359 1.07561 1.11333 1.18957 1.20087 0.93258 0.91203 1.05505 1.19920 0.97603 0.91016 0.99120 1.20928 0.96155 0.95152 0.98935 1.19909 0.93188 0.93739 1.03409 1.17988 0.85410 0.85311 0.77349 1.90789 1.22407 1.78252 1.49990 1.46173 1.08355 1.07515 1.73168 1.22734 0.99287 0.76106 0.99766 0.89756 1.23297 0.95093 0.98530 1.01121 1.23775 0.88547 0.94919 0.88066 0.82818 1.23061 0.95880 0.98264 1.00510 1.22912 0.97167 0.97511 0.99438 1.23201 0.95905 0.86251 0.92713 0.89586 1.46483 1.13903 0.99119 1.71467 1.19109 0.98711 0.81788 1.34134 0.90240 1.24700 0.96679 0.97585 1.01794 1.69442 1.11974 1.25574 1.50152 0.85957 0.78250 0.83519 0.77542 1.20548 1.21766 1.21808 1.20070 1.00562 0.87537 0.97725 1.19627 0.91016 0.90822 1.09002 0.88936 0.87755 0.88105 0.83744 0.84065 0.76852 0.91451 0.92635 0.92631 0.93593 0.93067 0.93018 0.93590 0.83651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.38 11.40 59.85 0.68 1.07 16 2 N -0.32 -3.02 3.80 -65.54 -0.25 -3.27 16 3 N -0.02 -0.21 13.07 60.35 0.79 0.58 16 4 N -0.26 -3.33 12.42 32.09 0.40 -2.93 16 5 C 0.03 0.30 7.36 -84.95 -0.63 -0.33 16 6 C -0.05 -0.50 10.03 -39.70 -0.40 -0.90 16 7 C -0.09 -0.81 9.46 -39.57 -0.37 -1.18 16 8 C -0.10 -1.08 5.88 -104.92 -0.62 -1.69 16 9 C 0.55 7.87 7.76 -12.39 -0.10 7.77 16 10 O -0.54 -9.58 16.05 5.30 0.09 -9.49 16 11 N -0.70 -9.53 3.58 -52.34 -0.19 -9.72 16 12 C 0.13 2.23 3.07 -65.40 -0.20 2.03 16 13 H 0.08 1.67 7.71 -51.93 -0.40 1.27 16 14 C -0.14 -2.51 6.20 -24.23 -0.15 -2.66 16 15 C 0.15 3.31 4.72 -62.80 -0.30 3.02 16 16 H 0.16 3.83 5.52 -51.93 -0.29 3.55 16 17 C -0.14 -2.53 6.44 -24.24 -0.16 -2.68 16 18 C -0.13 -2.30 6.32 -24.24 -0.15 -2.46 16 19 C 0.13 2.59 5.35 -62.79 -0.34 2.25 16 20 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 21 N -0.59 -14.22 2.98 -145.81 -0.44 -14.66 16 22 C -0.21 -5.65 10.59 -15.06 -0.16 -5.81 16 23 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 24 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 25 N -0.92 -25.65 10.47 55.49 0.58 -25.07 16 26 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 C -0.04 -0.39 9.59 -39.09 -0.38 -0.77 16 31 C 0.01 0.15 6.94 -84.23 -0.58 -0.43 16 32 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.14 0.92 6.36 -52.49 -0.33 0.58 16 37 H 0.40 4.24 6.01 -40.82 -0.25 3.99 16 38 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.06 0.81 7.34 -51.93 -0.38 0.43 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.70 7.82 -51.93 -0.41 0.29 16 42 H 0.05 0.76 6.48 -51.93 -0.34 0.42 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.15 1.46 7.63 -52.49 -0.40 1.06 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -33.12 365.93 -8.18 -41.30 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.72 Total: 4.30 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -3.93 Total: -3.21 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.90 Total: -55.06 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.12 -8.18 -41.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096441345.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.887 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds