Wall clock time and date at job start Wed Apr 1 2020 01:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40255 * 126.66526 * 2 1 4 4 N 1.28654 * 109.42248 * 180.02562 * 3 2 1 5 5 C 1.35396 * 110.10827 * 0.02562 * 4 3 2 6 6 C 1.40117 * 133.03175 * 179.97438 * 5 4 3 7 7 C 1.37594 * 120.15503 * 180.02562 * 6 5 4 8 8 C 1.38483 * 120.80097 * 359.61860 * 7 6 5 9 9 C 1.39212 * 120.27320 * 0.69439 * 8 7 6 10 10 C 1.47526 * 120.25153 * 179.63610 * 9 8 7 11 11 O 1.21586 * 120.00261 * 179.07566 * 10 9 8 12 12 N 1.34787 * 119.99550 * 359.07364 * 10 9 8 13 13 C 1.46502 * 119.99488 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.56095 * 37.62937 * 13 12 10 15 15 C 1.54860 * 110.62061 * 160.70077 * 13 12 10 16 16 C 1.56300 * 103.40078 * 118.36494 * 15 13 12 17 17 H 1.09007 * 115.71227 * 158.93480 * 16 15 13 18 18 C 1.55842 * 105.08018 * 288.42182 * 16 15 13 19 19 C 1.54219 * 103.56686 * 71.69351 * 18 16 15 20 20 C 1.55838 * 110.62868 * 274.72397 * 13 12 10 21 21 H 1.09004 * 115.56248 * 82.69726 * 20 13 12 22 22 N 1.50232 * 100.84442 * 33.12285 * 16 15 13 23 23 C 1.36934 * 130.84105 * 126.10709 * 22 16 15 24 24 H 1.08007 * 119.99972 * 189.60691 * 23 22 16 25 25 C 1.38814 * 120.00141 * 9.60432 * 23 22 16 26 26 N 1.31617 * 119.99870 * 197.35569 * 25 23 22 27 27 Si 1.86802 * 119.99751 * 17.35223 * 25 23 22 28 28 H 1.48503 * 109.47330 * 270.00345 * 27 25 23 29 29 H 1.48496 * 109.46796 * 150.00039 * 27 25 23 30 30 H 1.48503 * 109.47137 * 30.00371 * 27 25 23 31 31 C 1.36978 * 126.66750 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47463 * 251.85994 * 1 2 3 33 33 H 1.08994 * 109.47301 * 11.86510 * 1 2 3 34 34 H 1.09005 * 109.46876 * 131.86393 * 1 2 3 35 35 H 1.08003 * 119.92365 * 0.04271 * 6 5 4 36 36 H 1.08005 * 119.60219 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.86664 * 180.35776 * 8 7 6 38 38 H 0.96992 * 119.99902 * 0.02562 * 12 10 9 39 39 H 1.08999 * 110.62417 * 236.97683 * 15 13 12 40 40 H 1.09000 * 110.62624 * 359.97438 * 15 13 12 41 41 H 1.09000 * 110.62627 * 190.09644 * 18 16 15 42 42 H 1.09001 * 110.63030 * 312.95404 * 18 16 15 43 43 H 1.08995 * 110.64772 * 241.43701 * 19 18 16 44 44 H 1.09001 * 110.49741 * 118.48863 * 19 18 16 45 45 H 0.96996 * 120.00497 * 354.88205 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1250 0.0000 4 7 3.5312 0.7437 -0.0005 5 6 3.5989 -0.6086 -0.0015 6 6 4.6696 -1.5124 -0.0028 7 6 4.4305 -2.8673 -0.0041 8 6 3.1358 -3.3589 0.0038 9 6 2.0529 -2.4840 -0.0013 10 6 0.6740 -3.0083 -0.0010 11 8 -0.2685 -2.2402 0.0115 12 7 0.4589 -4.3388 -0.0146 13 6 -0.9106 -4.8594 -0.0136 14 1 -1.5586 -4.2331 -0.6268 15 6 -0.9366 -6.3265 -0.5087 16 6 -1.4964 -7.1135 0.7202 17 1 -1.9321 -8.0880 0.4992 18 6 -0.3445 -7.0991 1.7698 19 6 -0.3193 -5.6368 2.2592 20 6 -1.4594 -4.9581 1.4415 21 1 -1.8626 -4.0340 1.8559 22 7 -2.4324 -6.0948 1.3058 23 6 -3.7617 -6.1783 1.6237 24 1 -4.3090 -5.2878 1.8955 25 6 -4.4059 -7.4077 1.5966 26 7 -5.7206 -7.4610 1.5612 27 14 -3.4070 -8.9861 1.6102 28 1 -3.1051 -9.3929 0.2142 29 1 -4.1849 -10.0584 2.2811 30 1 -2.1368 -8.7617 2.3461 31 6 2.2830 -1.0987 -0.0005 32 1 -0.3634 -0.3199 0.9765 33 1 -0.3633 1.0056 -0.2113 34 1 -0.3633 -0.6859 -0.7654 35 1 5.6851 -1.1446 -0.0026 36 1 5.2625 -3.5560 -0.0055 37 1 2.9655 -4.4254 0.0085 38 1 1.2107 -4.9515 -0.0242 39 1 -1.5992 -6.4300 -1.3680 40 1 0.0692 -6.6665 -0.7552 41 1 -0.5690 -7.7741 2.5957 42 1 0.6035 -7.3671 1.3034 43 1 0.6416 -5.1733 2.0360 44 1 -0.5315 -5.5881 3.3273 45 1 -6.2411 -6.6454 1.6290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096686453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:11 Heat of formation + Delta-G solvation = 159.114990 kcal Electronic energy + Delta-G solvation = -30260.647806 eV Core-core repulsion = 26282.927957 eV Total energy + Delta-G solvation = -3977.719850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.38736 -40.46614 -38.94786 -37.60391 -34.81714 -34.20877 -32.63405 -31.33573 -30.58372 -29.77573 -29.32159 -28.30244 -27.49326 -24.89846 -23.76874 -22.88639 -22.69980 -21.63127 -20.43809 -20.06546 -19.02730 -18.35961 -17.81064 -17.34910 -16.94444 -16.43367 -16.12468 -15.70523 -15.50586 -15.16354 -14.91515 -14.35856 -14.35327 -13.54697 -13.48343 -13.29123 -13.02213 -12.69506 -12.61711 -12.49634 -12.23997 -12.06957 -11.88593 -11.76067 -11.59473 -11.42395 -11.38535 -11.26435 -10.91517 -10.81427 -10.44511 -10.10450 -9.77969 -9.66120 -9.42720 -9.25449 -9.21082 -9.01281 -8.66084 -8.54689 -7.28758 -6.35239 -3.25545 -0.08618 0.90818 1.67487 1.96860 2.70470 3.01550 3.28073 3.41723 3.42421 3.59280 3.76938 4.22989 4.30261 4.39482 4.49912 4.52512 4.62263 4.78189 5.00769 5.08839 5.12807 5.18036 5.31860 5.38060 5.45743 5.49544 5.57795 5.58525 5.66031 5.71038 5.72382 5.80014 5.84302 5.85628 5.92414 6.12902 6.15858 6.18190 6.27291 6.33168 6.38163 6.51782 6.62177 6.76177 6.80520 7.32546 7.43844 7.75594 8.14085 8.22509 8.94107 9.46240 10.24129 11.14271 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.003064 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.687710 B = 9136.402342 C =10008.937637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.372 5.372 3 N -0.011 5.011 4 N -0.225 5.225 5 C -0.029 4.029 6 C -0.009 4.009 7 C -0.145 4.145 8 C -0.034 4.034 9 C -0.132 4.132 10 C 0.555 3.445 11 O -0.541 6.541 12 N -0.701 5.701 13 C 0.130 3.870 14 H 0.090 0.910 15 C -0.135 4.135 16 C 0.120 3.880 17 H 0.094 0.906 18 C -0.137 4.137 19 C -0.131 4.131 20 C 0.136 3.864 21 H 0.092 0.908 22 N -0.602 5.602 23 C -0.310 4.310 24 H 0.079 0.921 25 C -0.024 4.024 26 N -0.930 5.930 27 Si 1.062 2.938 28 H -0.295 1.295 29 H -0.301 1.301 30 H -0.275 1.275 31 C 0.130 3.870 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.395 0.605 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.933 6.858 -4.472 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.165 5.165 3 N 0.009 4.991 4 N -0.102 5.102 5 C -0.154 4.154 6 C -0.032 4.032 7 C -0.166 4.166 8 C -0.056 4.056 9 C -0.140 4.140 10 C 0.343 3.657 11 O -0.422 6.422 12 N -0.351 5.351 13 C 0.025 3.975 14 H 0.108 0.892 15 C -0.175 4.175 16 C 0.013 3.987 17 H 0.112 0.888 18 C -0.176 4.176 19 C -0.171 4.171 20 C 0.026 3.974 21 H 0.110 0.890 22 N -0.325 5.325 23 C -0.437 4.437 24 H 0.097 0.903 25 C -0.224 4.224 26 N -0.571 5.571 27 Si 0.897 3.103 28 H -0.225 1.225 29 H -0.230 1.230 30 H -0.201 1.201 31 C 0.005 3.995 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.141 0.859 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.231 0.769 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 20.777 7.316 -4.470 22.477 hybrid contribution 0.225 0.342 0.160 0.439 sum 21.002 7.658 -4.310 22.767 Atomic orbital electron populations 1.22714 0.70701 1.03388 1.06718 1.50260 1.08890 1.02738 1.54571 1.81661 0.94025 1.07979 1.15448 1.74861 1.11630 1.10088 1.13665 1.19944 0.92967 0.90476 1.12008 1.20629 0.97637 0.91408 0.93491 1.20911 0.97008 0.94787 1.03892 1.21371 0.91596 0.99407 0.93218 1.18992 0.94514 0.89436 1.11071 1.18121 0.88247 0.82785 0.76505 1.90777 1.44871 1.55284 1.51230 1.46186 1.09764 1.06049 1.73143 1.22626 0.80478 0.94611 0.99817 0.89153 1.23244 1.00250 0.94398 0.99615 1.23297 0.89878 0.93855 0.91668 0.88840 1.23033 0.97670 0.97116 0.99782 1.22819 0.98347 0.95866 1.00064 1.23140 0.89179 0.92619 0.92415 0.88973 1.46834 1.05825 1.08135 1.71680 1.20128 0.81664 0.95922 1.45947 0.90312 1.25782 0.97169 1.00158 0.99273 1.70894 1.04391 1.31115 1.50688 0.83875 0.74702 0.75818 0.75911 1.22460 1.22964 1.20123 1.19020 0.90981 0.89410 1.00076 0.89388 0.90428 0.85866 0.83982 0.83813 0.84139 0.76929 0.90821 0.91770 0.91438 0.92598 0.92601 0.92393 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.24 9.45 59.85 0.57 1.81 16 2 N -0.37 -5.00 4.10 -65.28 -0.27 -5.27 16 3 N -0.01 -0.16 13.72 60.35 0.83 0.67 16 4 N -0.22 -3.09 12.40 32.15 0.40 -2.69 16 5 C -0.03 -0.35 7.26 -84.77 -0.62 -0.96 16 6 C -0.01 -0.07 10.09 -39.11 -0.39 -0.47 16 7 C -0.14 -0.89 9.98 -39.73 -0.40 -1.28 16 8 C -0.03 -0.24 9.53 -39.13 -0.37 -0.62 16 9 C -0.13 -1.44 5.88 -104.92 -0.62 -2.06 16 10 C 0.56 7.01 7.76 -12.47 -0.10 6.92 16 11 O -0.54 -8.14 10.48 5.29 0.06 -8.08 16 12 N -0.70 -8.09 3.57 -52.43 -0.19 -8.28 16 13 C 0.13 2.01 3.07 -65.43 -0.20 1.81 16 14 H 0.09 1.58 7.72 -51.93 -0.40 1.18 16 15 C -0.14 -2.06 6.22 -23.98 -0.15 -2.21 16 16 C 0.12 2.28 3.56 -62.55 -0.22 2.05 16 17 H 0.09 1.92 3.22 -51.92 -0.17 1.75 16 18 C -0.14 -2.18 6.15 -24.58 -0.15 -2.33 16 19 C -0.13 -2.07 6.29 -24.57 -0.15 -2.22 16 20 C 0.14 2.51 5.34 -62.80 -0.34 2.17 16 21 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 22 N -0.60 -13.65 2.85 -145.55 -0.41 -14.06 16 23 C -0.31 -8.53 10.85 -15.06 -0.16 -8.69 16 24 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 25 C -0.02 -0.69 5.50 -17.43 -0.10 -0.79 16 26 N -0.93 -28.69 13.70 55.49 0.76 -27.93 16 27 Si 1.06 25.22 24.92 -169.99 -4.24 20.99 16 28 H -0.30 -6.63 6.76 56.52 0.38 -6.25 16 29 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 30 H -0.27 -5.86 4.70 56.52 0.27 -5.60 16 31 C 0.13 1.66 6.84 -83.92 -0.57 1.08 16 32 H 0.09 1.10 7.43 -51.93 -0.39 0.71 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.12 1.58 5.68 -52.93 -0.30 1.28 16 35 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.14 0.41 8.06 -52.48 -0.42 -0.01 16 37 H 0.14 0.62 6.39 -52.49 -0.34 0.29 16 38 H 0.39 3.36 6.06 -40.82 -0.25 3.11 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 0.74 7.35 -51.93 -0.38 0.36 16 41 H 0.07 1.18 6.61 -51.93 -0.34 0.83 16 42 H 0.06 0.69 7.83 -51.93 -0.41 0.28 16 43 H 0.06 0.71 6.50 -51.93 -0.34 0.38 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 LS Contribution 348.35 15.07 5.25 5.25 Total: -1.00 -33.55 348.35 -7.36 -40.91 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -5.57 Total: 4.30 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -3.98 Total: -5.80 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 1.12 Total: -57.57 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.06 Total: -8.08 kcal Atomic # 14 Polarization: 25.22 SS G_CDS: -4.24 Total: 20.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.55 -7.36 -40.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096686453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.026 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 166.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds