Wall clock time and date at job start Wed Apr 1 2020 01:17:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.40255 * 126.66526 * 2 1 4 4 N 1.28654 * 109.42248 * 180.02562 * 3 2 1 5 5 C 1.35396 * 110.10827 * 0.02562 * 4 3 2 6 6 C 1.40117 * 133.03175 * 179.97438 * 5 4 3 7 7 C 1.37594 * 120.15503 * 180.02562 * 6 5 4 8 8 C 1.38483 * 120.80097 * 359.61860 * 7 6 5 9 9 C 1.39212 * 120.27320 * 0.69439 * 8 7 6 10 10 C 1.47526 * 120.25153 * 179.63610 * 9 8 7 11 11 O 1.21586 * 120.00261 * 179.07566 * 10 9 8 12 12 N 1.34787 * 119.99550 * 359.07364 * 10 9 8 13 13 C 1.46502 * 119.99488 * 179.97438 * 12 10 9 14 14 H 1.08998 * 110.56095 * 37.62937 * 13 12 10 15 15 C 1.54860 * 110.62061 * 160.70077 * 13 12 10 16 16 C 1.56300 * 103.40078 * 118.36494 * 15 13 12 17 17 H 1.09007 * 115.71227 * 158.93480 * 16 15 13 18 18 C 1.55842 * 105.08018 * 288.42182 * 16 15 13 19 19 C 1.54219 * 103.56686 * 71.69351 * 18 16 15 20 20 C 1.55838 * 110.62868 * 274.72397 * 13 12 10 21 21 H 1.09004 * 115.56248 * 82.69726 * 20 13 12 22 22 N 1.50232 * 100.84442 * 33.12285 * 16 15 13 23 23 C 1.36934 * 130.84105 * 126.10709 * 22 16 15 24 24 H 1.08007 * 119.99972 * 189.60691 * 23 22 16 25 25 C 1.38814 * 120.00141 * 9.60432 * 23 22 16 26 26 N 1.31617 * 119.99870 * 197.35569 * 25 23 22 27 27 Si 1.86802 * 119.99751 * 17.35223 * 25 23 22 28 28 H 1.48503 * 109.47330 * 270.00345 * 27 25 23 29 29 H 1.48496 * 109.46796 * 150.00039 * 27 25 23 30 30 H 1.48503 * 109.47137 * 30.00371 * 27 25 23 31 31 C 1.36978 * 126.66750 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47463 * 251.85994 * 1 2 3 33 33 H 1.08994 * 109.47301 * 11.86510 * 1 2 3 34 34 H 1.09005 * 109.46876 * 131.86393 * 1 2 3 35 35 H 1.08003 * 119.92365 * 0.04271 * 6 5 4 36 36 H 1.08005 * 119.60219 * 179.97438 * 7 6 5 37 37 H 1.08000 * 119.86664 * 180.35776 * 8 7 6 38 38 H 0.96992 * 119.99902 * 0.02562 * 12 10 9 39 39 H 1.08999 * 110.62417 * 236.97683 * 15 13 12 40 40 H 1.09000 * 110.62624 * 359.97438 * 15 13 12 41 41 H 1.09000 * 110.62627 * 190.09644 * 18 16 15 42 42 H 1.09001 * 110.63030 * 312.95404 * 18 16 15 43 43 H 1.08995 * 110.64772 * 241.43701 * 19 18 16 44 44 H 1.09001 * 110.49741 * 118.48863 * 19 18 16 45 45 H 0.96996 * 120.00497 * 354.88205 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3025 1.1250 0.0000 4 7 3.5312 0.7437 -0.0005 5 6 3.5989 -0.6086 -0.0015 6 6 4.6696 -1.5124 -0.0028 7 6 4.4305 -2.8673 -0.0041 8 6 3.1358 -3.3589 0.0038 9 6 2.0529 -2.4840 -0.0013 10 6 0.6740 -3.0083 -0.0010 11 8 -0.2685 -2.2402 0.0115 12 7 0.4589 -4.3388 -0.0146 13 6 -0.9106 -4.8594 -0.0136 14 1 -1.5586 -4.2331 -0.6268 15 6 -0.9366 -6.3265 -0.5087 16 6 -1.4964 -7.1135 0.7202 17 1 -1.9321 -8.0880 0.4992 18 6 -0.3445 -7.0991 1.7698 19 6 -0.3193 -5.6368 2.2592 20 6 -1.4594 -4.9581 1.4415 21 1 -1.8626 -4.0340 1.8559 22 7 -2.4324 -6.0948 1.3058 23 6 -3.7617 -6.1783 1.6237 24 1 -4.3090 -5.2878 1.8955 25 6 -4.4059 -7.4077 1.5966 26 7 -5.7206 -7.4610 1.5612 27 14 -3.4070 -8.9861 1.6102 28 1 -3.1051 -9.3929 0.2142 29 1 -4.1849 -10.0584 2.2811 30 1 -2.1368 -8.7617 2.3461 31 6 2.2830 -1.0987 -0.0005 32 1 -0.3634 -0.3199 0.9765 33 1 -0.3633 1.0056 -0.2113 34 1 -0.3633 -0.6859 -0.7654 35 1 5.6851 -1.1446 -0.0026 36 1 5.2625 -3.5560 -0.0055 37 1 2.9655 -4.4254 0.0085 38 1 1.2107 -4.9515 -0.0242 39 1 -1.5992 -6.4300 -1.3680 40 1 0.0692 -6.6665 -0.7552 41 1 -0.5690 -7.7741 2.5957 42 1 0.6035 -7.3671 1.3034 43 1 0.6416 -5.1733 2.0360 44 1 -0.5315 -5.5881 3.3273 45 1 -6.2411 -6.6454 1.6290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096686453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:10 Heat of formation + Delta-G solvation = 134.089492 kcal Electronic energy + Delta-G solvation = -30261.732993 eV Core-core repulsion = 26282.927957 eV Total energy + Delta-G solvation = -3978.805037 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.23288 -41.68489 -40.09434 -38.34705 -35.90515 -35.30420 -34.53973 -32.19667 -31.34980 -31.34199 -30.72752 -29.60781 -28.42811 -25.92378 -25.27747 -23.83694 -23.57695 -22.83471 -21.96399 -21.11273 -20.41298 -19.51597 -19.07803 -18.55580 -17.90857 -17.60137 -17.34450 -16.72298 -16.41523 -16.20655 -15.82559 -15.59470 -15.25964 -15.24972 -15.15757 -14.43176 -14.15792 -13.61915 -13.48527 -13.46307 -13.43683 -13.20744 -13.09525 -12.97271 -12.91486 -12.62517 -12.52648 -12.44930 -12.28525 -11.88484 -11.75429 -11.49554 -11.37372 -11.07941 -11.00855 -10.77523 -10.66160 -10.07715 -9.97739 -9.34788 -9.19872 -8.60306 -5.40928 -0.81214 0.15628 0.84319 1.10601 1.37583 1.56241 1.72518 1.84929 2.01600 2.57910 2.67718 2.98347 3.06697 3.22585 3.48563 3.56367 3.67263 3.75971 3.80992 3.87060 3.97919 4.15962 4.24862 4.30978 4.34211 4.41615 4.46124 4.54369 4.60375 4.67277 4.69355 4.72556 4.82703 4.87926 4.94371 5.04043 5.12868 5.17815 5.23131 5.26989 5.35602 5.37355 5.47816 5.56625 5.63327 5.68158 6.04466 6.54376 6.77391 6.84957 7.23832 7.39935 8.23848 8.90500 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.003064 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.687710 B = 9136.402342 C =10008.937637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.384 5.384 3 N -0.046 5.046 4 N -0.240 5.240 5 C -0.050 4.050 6 C -0.007 4.007 7 C -0.125 4.125 8 C -0.004 4.004 9 C -0.159 4.159 10 C 0.553 3.447 11 O -0.575 6.575 12 N -0.684 5.684 13 C 0.151 3.849 14 H 0.058 0.942 15 C -0.122 4.122 16 C 0.101 3.899 17 H 0.082 0.918 18 C -0.128 4.128 19 C -0.119 4.119 20 C 0.121 3.879 21 H 0.058 0.942 22 N -0.635 5.635 23 C -0.292 4.292 24 H 0.031 0.969 25 C -0.090 4.090 26 N -0.972 5.972 27 Si 1.107 2.893 28 H -0.272 1.272 29 H -0.319 1.319 30 H -0.234 1.234 31 C 0.108 3.892 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.169 0.831 36 H 0.194 0.806 37 H 0.184 0.816 38 H 0.417 0.583 39 H 0.061 0.939 40 H 0.122 0.878 41 H 0.054 0.946 42 H 0.115 0.885 43 H 0.097 0.903 44 H 0.041 0.959 45 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.376 3.973 -5.369 29.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.177 5.177 3 N -0.025 5.025 4 N -0.117 5.117 5 C -0.175 4.175 6 C -0.029 4.029 7 C -0.146 4.146 8 C -0.026 4.026 9 C -0.167 4.167 10 C 0.343 3.657 11 O -0.457 6.457 12 N -0.336 5.336 13 C 0.044 3.956 14 H 0.077 0.923 15 C -0.161 4.161 16 C -0.004 4.004 17 H 0.100 0.900 18 C -0.166 4.166 19 C -0.158 4.158 20 C 0.014 3.986 21 H 0.076 0.924 22 N -0.359 5.359 23 C -0.420 4.420 24 H 0.049 0.951 25 C -0.281 4.281 26 N -0.617 5.617 27 Si 0.934 3.066 28 H -0.200 1.200 29 H -0.249 1.249 30 H -0.158 1.158 31 C -0.016 4.016 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.131 0.869 35 H 0.186 0.814 36 H 0.211 0.789 37 H 0.201 0.799 38 H 0.257 0.743 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.134 0.866 43 H 0.116 0.884 44 H 0.059 0.941 45 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 27.332 4.481 -5.386 28.216 hybrid contribution -1.673 1.363 0.437 2.202 sum 25.659 5.844 -4.950 26.777 Atomic orbital electron populations 1.22532 0.70804 1.03761 1.05520 1.50327 1.09028 1.03235 1.55132 1.81597 0.94475 1.08682 1.17792 1.74762 1.11580 1.11628 1.13729 1.20490 0.93975 0.90085 1.12975 1.21162 0.97798 0.91886 0.92082 1.21496 0.97890 0.94402 1.00815 1.21972 0.90815 1.00840 0.88991 1.18930 0.94304 0.89015 1.14457 1.18505 0.88890 0.82740 0.75551 1.90793 1.46278 1.56276 1.52388 1.45793 1.08609 1.06050 1.73189 1.22010 0.82081 0.94918 0.96624 0.92340 1.23187 1.02970 0.92702 0.97283 1.23657 0.89866 0.92782 0.94100 0.90029 1.23039 0.98814 0.96273 0.98503 1.22742 0.98529 0.96064 0.98440 1.23296 0.89497 0.90600 0.95254 0.92415 1.46894 1.05006 1.11199 1.72826 1.19900 0.84466 0.94138 1.43540 0.95078 1.27269 0.97205 1.04014 0.99639 1.71031 1.05911 1.29995 1.54801 0.83435 0.74647 0.71094 0.77469 1.19975 1.24913 1.15844 1.19516 0.91303 0.90140 1.00686 0.90710 0.89186 0.86929 0.81358 0.78869 0.79897 0.74285 0.92043 0.85990 0.92732 0.86640 0.88434 0.94053 0.94893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.93 9.45 127.77 1.21 4.14 16 2 N -0.38 -10.70 4.10 -360.44 -1.48 -12.18 16 3 N -0.05 -1.37 13.72 37.02 0.51 -0.86 16 4 N -0.24 -6.59 12.40 -52.20 -0.65 -7.24 16 5 C -0.05 -1.09 7.26 39.58 0.29 -0.80 16 6 C -0.01 -0.08 10.09 22.57 0.23 0.15 16 7 C -0.13 -0.62 9.98 22.18 0.22 -0.40 16 8 C 0.00 -0.03 9.53 22.56 0.22 0.18 16 9 C -0.16 -2.93 5.88 -20.06 -0.12 -3.05 16 10 C 0.55 12.77 7.76 86.69 0.67 13.44 16 11 O -0.57 -17.69 10.48 -3.99 -0.04 -17.73 16 12 N -0.68 -12.76 3.57 -438.06 -1.57 -14.33 16 13 C 0.15 4.32 3.07 46.61 0.14 4.46 16 14 H 0.06 2.07 7.72 -2.39 -0.02 2.05 16 15 C -0.12 -3.17 6.22 32.38 0.20 -2.97 16 16 C 0.10 3.47 3.56 46.39 0.16 3.63 16 17 H 0.08 3.04 3.22 -2.38 -0.01 3.03 16 18 C -0.13 -3.31 6.15 31.99 0.20 -3.12 16 19 C -0.12 -3.26 6.29 31.99 0.20 -3.06 16 20 C 0.12 4.43 5.34 46.23 0.25 4.68 16 21 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 22 N -0.63 -28.90 2.85 -614.39 -1.75 -30.66 16 23 C -0.29 -16.97 10.85 84.03 0.91 -16.06 16 24 H 0.03 2.03 8.06 -2.91 -0.02 2.01 16 25 C -0.09 -5.36 5.50 84.86 0.47 -4.89 16 26 N -0.97 -63.65 13.70 21.65 0.30 -63.35 16 27 Si 1.11 50.87 24.92 68.60 1.71 52.58 16 28 H -0.27 -11.36 6.76 99.48 0.67 -10.68 16 29 H -0.32 -15.50 7.11 99.48 0.71 -14.79 16 30 H -0.23 -9.09 4.70 99.48 0.47 -8.63 16 31 C 0.11 2.64 6.84 39.41 0.27 2.91 16 32 H 0.07 2.06 7.43 -2.39 -0.02 2.05 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.11 3.14 5.68 -18.25 -0.10 3.03 16 35 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 36 H 0.19 -0.77 8.06 -2.91 -0.02 -0.80 16 37 H 0.18 -0.16 6.39 -2.91 -0.02 -0.18 16 38 H 0.42 3.84 6.06 -92.71 -0.56 3.28 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.12 1.80 7.35 -2.39 -0.02 1.78 16 41 H 0.05 1.60 6.61 -2.39 -0.02 1.58 16 42 H 0.12 1.72 7.83 -2.39 -0.02 1.70 16 43 H 0.10 1.87 6.50 -2.39 -0.02 1.85 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.24 16.12 8.73 -92.71 -0.81 15.31 16 Total: -1.00 -86.20 348.35 2.64 -83.56 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.09 Total: 10.96 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 5.52 Total: -0.76 kcal Atomic # 7 Polarization: -123.97 SS G_CDS: -4.64 Total: -128.61 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.04 Total: -17.73 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 1.71 Total: 52.58 kcal Total: -86.20 2.64 -83.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096686453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 217.648 kcal (2) G-P(sol) polarization free energy of solvation -86.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds