Wall clock time and date at job start Wed Apr 1 2020 01:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40229 * 126.65872 * 2 1 4 4 N 1.28641 * 109.50760 * 180.02562 * 3 2 1 5 5 C 1.35429 * 110.13279 * 359.97438 * 4 3 2 6 6 C 1.39793 * 133.04236 * 180.02562 * 5 4 3 7 7 C 1.38880 * 119.56110 * 179.97438 * 6 5 4 8 8 C 1.47712 * 119.86658 * 179.97438 * 7 6 5 9 9 O 1.21573 * 119.99678 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00301 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99902 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.68728 * 32.01299 * 11 10 8 13 13 C 1.54848 * 110.62469 * 269.02148 * 11 10 8 14 14 C 1.55850 * 103.44768 * 241.51381 * 13 11 10 15 15 H 1.08993 * 115.56382 * 159.56834 * 14 13 11 16 16 C 1.55848 * 105.06331 * 288.17799 * 14 13 11 17 17 C 1.54851 * 103.44401 * 71.82278 * 16 14 13 18 18 C 1.55846 * 103.44779 * 359.97438 * 17 16 14 19 19 H 1.08995 * 115.56034 * 159.56510 * 18 17 16 20 20 N 1.50236 * 101.04677 * 32.93871 * 18 17 16 21 21 C 1.36935 * 130.83608 * 126.01243 * 20 18 17 22 22 H 1.08000 * 120.00366 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99851 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00177 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99955 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47268 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47030 * 120.00804 * 25 23 21 28 28 H 1.48500 * 109.47346 * 240.00263 * 25 23 21 29 29 C 1.40257 * 120.27132 * 0.26109 * 7 6 5 30 30 C 1.36275 * 120.45297 * 359.46992 * 29 7 6 31 31 C 1.37269 * 126.65676 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47158 * 269.99733 * 1 2 3 33 33 H 1.08998 * 109.47622 * 29.99348 * 1 2 3 34 34 H 1.09005 * 109.47273 * 149.99789 * 1 2 3 35 35 H 1.08005 * 120.22026 * 0.02562 * 6 5 4 36 36 H 0.97004 * 119.99609 * 359.97438 * 10 8 7 37 37 H 1.08994 * 110.63250 * 0.02562 * 13 11 10 38 38 H 1.09004 * 110.62352 * 123.02664 * 13 11 10 39 39 H 1.08996 * 110.62572 * 190.31182 * 16 14 13 40 40 H 1.09003 * 110.62577 * 313.17343 * 16 14 13 41 41 H 1.09006 * 110.62604 * 241.51147 * 17 16 14 42 42 H 1.08999 * 110.62558 * 118.49113 * 17 16 14 43 43 H 0.96993 * 120.00388 * 179.97438 * 24 23 21 44 44 H 1.07992 * 119.77697 * 179.74113 * 29 7 6 45 45 H 1.07991 * 119.92584 * 180.27795 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5314 0.7456 -0.0005 5 6 3.6018 -0.6069 -0.0004 6 6 4.6718 -1.5066 -0.0003 7 6 4.4187 -2.8721 0.0005 8 6 5.5441 -3.8288 0.0000 9 8 6.6891 -3.4203 -0.0006 10 7 5.3017 -5.1546 0.0002 11 6 6.4179 -6.1034 0.0002 12 1 7.2713 -5.6939 0.5407 13 6 6.8175 -6.4757 -1.4487 14 6 6.5667 -8.0126 -1.5103 15 1 6.4486 -8.4302 -2.5101 16 6 7.7016 -8.6431 -0.6481 17 6 7.3020 -8.2707 0.8009 18 6 5.9804 -7.4655 0.6168 19 1 5.3433 -7.3994 1.4987 20 7 5.3918 -8.1490 -0.5846 21 6 4.1626 -8.7212 -0.7765 22 1 3.4364 -8.7217 0.0229 23 6 3.8494 -9.2995 -1.9990 24 7 4.7342 -9.2985 -2.9734 25 14 2.1729 -10.0806 -2.2606 26 1 1.3675 -9.9515 -1.0197 27 1 1.4753 -9.3931 -3.3768 28 1 2.3429 -11.5178 -2.5936 29 6 3.0988 -3.3466 -0.0044 30 6 2.0514 -2.4748 0.0010 31 6 2.2845 -1.1012 -0.0005 32 1 -0.3633 0.0000 1.0276 33 1 -0.3634 0.8900 -0.5137 34 1 -0.3634 -0.8900 -0.5139 35 1 5.6885 -1.1422 0.0000 36 1 4.3880 -5.4806 0.0010 37 1 6.1854 -5.9541 -2.1674 38 1 7.8691 -6.2508 -1.6269 39 1 7.7234 -9.7255 -0.7743 40 1 8.6670 -8.2079 -0.9066 41 1 8.0688 -7.6489 1.2630 42 1 7.1257 -9.1685 1.3933 43 1 4.5156 -9.7029 -3.8275 44 1 2.9112 -4.4101 -0.0080 45 1 1.0386 -2.8494 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097338857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:14 Heat of formation + Delta-G solvation = 129.214676 kcal Electronic energy + Delta-G solvation = -29376.656635 eV Core-core repulsion = 25397.640210 eV Total energy + Delta-G solvation = -3979.016425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.30913 -39.99199 -38.71884 -37.09390 -34.99480 -33.92244 -32.59330 -30.97729 -30.72758 -29.15878 -28.82978 -27.96337 -27.61489 -24.62475 -24.10737 -23.51371 -21.57992 -21.35936 -20.22257 -19.85217 -18.79543 -18.11370 -17.63370 -17.06129 -16.51591 -16.39960 -15.98276 -15.14310 -14.86693 -14.54868 -14.47766 -14.25424 -13.96630 -13.79253 -13.51904 -13.49625 -13.19942 -12.80467 -12.55558 -12.21896 -12.06935 -11.94191 -11.86369 -11.30321 -11.15702 -11.01653 -10.98314 -10.97133 -10.93613 -10.54063 -10.38608 -10.12922 -9.97512 -9.83050 -9.30151 -9.20683 -9.16244 -9.02042 -8.65756 -8.43425 -7.00038 -5.80017 -3.19251 0.22406 0.69761 1.76980 1.94063 2.84862 3.30691 3.35612 3.37454 3.39370 3.72534 3.86290 4.05983 4.33717 4.35086 4.61534 4.65475 4.73774 4.90075 4.91537 5.00679 5.08718 5.22169 5.31462 5.60329 5.61599 5.66807 5.70403 5.84421 5.92529 6.00144 6.02727 6.09372 6.12453 6.19658 6.27864 6.34615 6.39696 6.47199 6.57448 6.71342 6.80656 6.92796 7.07303 7.29538 7.42349 7.71161 7.74913 7.91560 8.10995 8.51806 9.01734 9.64931 10.46401 11.29054 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.003148 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.036030 B = 8892.040475 C =10620.496211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.400 5.400 3 N -0.012 5.012 4 N -0.208 5.208 5 C -0.029 4.029 6 C 0.032 3.968 7 C -0.143 4.143 8 C 0.557 3.443 9 O -0.546 6.546 10 N -0.698 5.698 11 C 0.128 3.872 12 H 0.083 0.917 13 C -0.144 4.144 14 C 0.156 3.844 15 H 0.151 0.849 16 C -0.140 4.140 17 C -0.128 4.128 18 C 0.125 3.875 19 H 0.088 0.912 20 N -0.590 5.590 21 C -0.216 4.216 22 H 0.079 0.921 23 C -0.009 4.009 24 N -0.917 5.917 25 Si 0.913 3.087 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.291 1.291 29 C -0.035 4.035 30 C -0.128 4.128 31 C 0.104 3.896 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.153 0.847 36 H 0.402 0.598 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.057 0.943 43 H 0.254 0.746 44 H 0.146 0.854 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.503 12.392 6.557 15.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.194 5.194 3 N 0.008 4.992 4 N -0.088 5.088 5 C -0.152 4.152 6 C 0.008 3.992 7 C -0.150 4.150 8 C 0.343 3.657 9 O -0.425 6.425 10 N -0.347 5.347 11 C 0.022 3.978 12 H 0.101 0.899 13 C -0.184 4.184 14 C 0.050 3.950 15 H 0.168 0.832 16 C -0.179 4.179 17 C -0.168 4.168 18 C 0.016 3.984 19 H 0.106 0.894 20 N -0.311 5.311 21 C -0.344 4.344 22 H 0.097 0.903 23 C -0.205 4.205 24 N -0.565 5.565 25 Si 0.744 3.256 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.057 4.057 30 C -0.151 4.151 31 C -0.018 4.018 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.171 0.829 36 H 0.238 0.762 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.164 0.836 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.987 14.044 6.379 16.546 hybrid contribution -1.658 -1.585 -0.181 2.301 sum -7.645 12.459 6.198 15.877 Atomic orbital electron populations 1.22019 0.72730 1.05324 1.04148 1.50090 1.07868 1.03510 1.57944 1.81615 0.94066 1.07619 1.15907 1.74850 1.11192 1.10497 1.12218 1.19783 0.93104 0.90121 1.12230 1.20563 0.98406 0.89950 0.90249 1.19843 0.93871 0.93433 1.07811 1.17959 0.88050 0.82611 0.77042 1.90758 1.22105 1.78687 1.50959 1.45925 1.11184 1.04793 1.72818 1.22673 0.87990 0.88997 0.98126 0.89950 1.23475 0.99209 1.00609 0.95135 1.23687 0.83581 0.90118 0.97658 0.83186 1.23073 0.98535 1.00550 0.95758 1.22881 0.97058 0.99337 0.97513 1.23150 0.93456 0.90235 0.91513 0.89372 1.46515 1.11975 1.64521 1.08105 1.19034 0.88687 1.29240 0.97429 0.90346 1.24703 0.98218 1.01467 0.96105 1.69497 1.33421 1.49619 1.03962 0.86027 0.83136 0.78894 0.77541 1.20611 1.21861 1.21812 1.21069 0.90861 1.00510 0.93233 1.19704 1.00645 0.87889 1.06815 1.19498 0.90903 0.90591 1.00812 0.89917 0.88466 0.88831 0.82919 0.76208 0.92125 0.92700 0.92657 0.93273 0.92935 0.92430 0.93566 0.83618 0.84420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.52 59.84 0.69 1.19 16 2 N -0.40 -4.15 4.11 -65.43 -0.27 -4.41 16 3 N -0.01 -0.15 13.72 60.35 0.83 0.67 16 4 N -0.21 -3.00 12.40 32.15 0.40 -2.60 16 5 C -0.03 -0.39 7.26 -84.77 -0.62 -1.01 16 6 C 0.03 0.43 9.64 -38.76 -0.37 0.05 16 7 C -0.14 -1.92 5.87 -105.03 -0.62 -2.54 16 8 C 0.56 9.01 7.76 -12.39 -0.10 8.92 16 9 O -0.55 -10.46 15.96 5.30 0.08 -10.38 16 10 N -0.70 -11.22 5.02 -52.41 -0.26 -11.48 16 11 C 0.13 2.27 2.80 -65.47 -0.18 2.09 16 12 H 0.08 1.47 7.23 -51.93 -0.38 1.09 16 13 C -0.14 -2.82 6.23 -24.24 -0.15 -2.97 16 14 C 0.16 3.41 4.69 -62.82 -0.29 3.11 16 15 H 0.15 3.79 5.57 -51.93 -0.29 3.50 16 16 C -0.14 -2.66 6.44 -24.23 -0.16 -2.82 16 17 C -0.13 -2.22 6.44 -24.24 -0.16 -2.38 16 18 C 0.13 2.29 5.06 -62.83 -0.32 1.98 16 19 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 20 N -0.59 -13.22 2.98 -145.88 -0.44 -13.65 16 21 C -0.22 -5.34 10.59 -15.06 -0.16 -5.50 16 22 H 0.08 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 24 N -0.92 -24.82 10.48 55.49 0.58 -24.23 16 25 Si 0.91 20.46 29.55 -169.99 -5.02 15.43 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 29 C -0.03 -0.38 9.46 -39.53 -0.37 -0.75 16 30 C -0.13 -1.24 9.97 -39.89 -0.40 -1.64 16 31 C 0.10 1.20 6.93 -84.10 -0.58 0.62 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.15 2.06 7.62 -52.48 -0.40 1.66 16 36 H 0.40 6.03 6.65 -40.82 -0.27 5.76 16 37 H 0.06 1.29 7.98 -51.93 -0.41 0.87 16 38 H 0.05 1.01 7.82 -51.93 -0.41 0.61 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 41 H 0.05 0.80 7.82 -51.93 -0.41 0.40 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.25 6.73 8.31 -40.82 -0.34 6.40 16 44 H 0.15 1.40 6.36 -52.49 -0.33 1.07 16 45 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -31.27 369.61 -8.22 -39.48 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.81 Total: 7.58 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.88 Total: -1.98 kcal Atomic # 7 Polarization: -56.55 SS G_CDS: 0.84 Total: -55.71 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.27 -8.22 -39.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097338857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.699 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds