Wall clock time and date at job start Wed Apr 1 2020 01:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40229 * 126.65872 * 2 1 4 4 N 1.28641 * 109.50760 * 180.02562 * 3 2 1 5 5 C 1.35429 * 110.13279 * 359.97438 * 4 3 2 6 6 C 1.39793 * 133.04236 * 180.02562 * 5 4 3 7 7 C 1.38880 * 119.56110 * 179.97438 * 6 5 4 8 8 C 1.47712 * 119.86658 * 179.97438 * 7 6 5 9 9 O 1.21573 * 119.99678 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00301 * 180.02562 * 8 7 6 11 11 C 1.46498 * 119.99902 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.68728 * 32.01299 * 11 10 8 13 13 C 1.54848 * 110.62469 * 269.02148 * 11 10 8 14 14 C 1.55850 * 103.44768 * 241.51381 * 13 11 10 15 15 H 1.08993 * 115.56382 * 159.56834 * 14 13 11 16 16 C 1.55848 * 105.06331 * 288.17799 * 14 13 11 17 17 C 1.54851 * 103.44401 * 71.82278 * 16 14 13 18 18 C 1.55846 * 103.44779 * 359.97438 * 17 16 14 19 19 H 1.08995 * 115.56034 * 159.56510 * 18 17 16 20 20 N 1.50236 * 101.04677 * 32.93871 * 18 17 16 21 21 C 1.36935 * 130.83608 * 126.01243 * 20 18 17 22 22 H 1.08000 * 120.00366 * 0.02562 * 21 20 18 23 23 C 1.38817 * 119.99851 * 179.97438 * 21 20 18 24 24 N 1.31620 * 120.00177 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99955 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47268 * 0.02562 * 25 23 21 27 27 H 1.48499 * 109.47030 * 120.00804 * 25 23 21 28 28 H 1.48500 * 109.47346 * 240.00263 * 25 23 21 29 29 C 1.40257 * 120.27132 * 0.26109 * 7 6 5 30 30 C 1.36275 * 120.45297 * 359.46992 * 29 7 6 31 31 C 1.37269 * 126.65676 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47158 * 269.99733 * 1 2 3 33 33 H 1.08998 * 109.47622 * 29.99348 * 1 2 3 34 34 H 1.09005 * 109.47273 * 149.99789 * 1 2 3 35 35 H 1.08005 * 120.22026 * 0.02562 * 6 5 4 36 36 H 0.97004 * 119.99609 * 359.97438 * 10 8 7 37 37 H 1.08994 * 110.63250 * 0.02562 * 13 11 10 38 38 H 1.09004 * 110.62352 * 123.02664 * 13 11 10 39 39 H 1.08996 * 110.62572 * 190.31182 * 16 14 13 40 40 H 1.09003 * 110.62577 * 313.17343 * 16 14 13 41 41 H 1.09006 * 110.62604 * 241.51147 * 17 16 14 42 42 H 1.08999 * 110.62558 * 118.49113 * 17 16 14 43 43 H 0.96993 * 120.00388 * 179.97438 * 24 23 21 44 44 H 1.07992 * 119.77697 * 179.74113 * 29 7 6 45 45 H 1.07991 * 119.92584 * 180.27795 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.3022 1.1249 0.0000 4 7 3.5314 0.7456 -0.0005 5 6 3.6018 -0.6069 -0.0004 6 6 4.6718 -1.5066 -0.0003 7 6 4.4187 -2.8721 0.0005 8 6 5.5441 -3.8288 0.0000 9 8 6.6891 -3.4203 -0.0006 10 7 5.3017 -5.1546 0.0002 11 6 6.4179 -6.1034 0.0002 12 1 7.2713 -5.6939 0.5407 13 6 6.8175 -6.4757 -1.4487 14 6 6.5667 -8.0126 -1.5103 15 1 6.4486 -8.4302 -2.5101 16 6 7.7016 -8.6431 -0.6481 17 6 7.3020 -8.2707 0.8009 18 6 5.9804 -7.4655 0.6168 19 1 5.3433 -7.3994 1.4987 20 7 5.3918 -8.1490 -0.5846 21 6 4.1626 -8.7212 -0.7765 22 1 3.4364 -8.7217 0.0229 23 6 3.8494 -9.2995 -1.9990 24 7 4.7342 -9.2985 -2.9734 25 14 2.1729 -10.0806 -2.2606 26 1 1.3675 -9.9515 -1.0197 27 1 1.4753 -9.3931 -3.3768 28 1 2.3429 -11.5178 -2.5936 29 6 3.0988 -3.3466 -0.0044 30 6 2.0514 -2.4748 0.0010 31 6 2.2845 -1.1012 -0.0005 32 1 -0.3633 0.0000 1.0276 33 1 -0.3634 0.8900 -0.5137 34 1 -0.3634 -0.8900 -0.5139 35 1 5.6885 -1.1422 0.0000 36 1 4.3880 -5.4806 0.0010 37 1 6.1854 -5.9541 -2.1674 38 1 7.8691 -6.2508 -1.6269 39 1 7.7234 -9.7255 -0.7743 40 1 8.6670 -8.2079 -0.9066 41 1 8.0688 -7.6489 1.2630 42 1 7.1257 -9.1685 1.3933 43 1 4.5156 -9.7029 -3.8275 44 1 2.9112 -4.4101 -0.0080 45 1 1.0386 -2.8494 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097338857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:13 Heat of formation + Delta-G solvation = 109.334640 kcal Electronic energy + Delta-G solvation = -29377.518698 eV Core-core repulsion = 25397.640210 eV Total energy + Delta-G solvation = -3979.878488 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.21582 -41.36867 -40.10252 -38.15198 -35.78753 -35.34398 -34.38102 -31.89235 -31.71780 -30.92013 -30.31258 -29.23395 -28.44950 -26.15946 -25.45037 -24.44206 -22.86131 -22.23852 -21.50599 -21.48473 -20.31232 -19.26106 -18.79575 -18.45444 -17.66795 -17.22219 -17.15643 -16.73245 -16.23641 -15.95190 -15.61776 -15.46302 -15.27191 -14.94966 -14.47687 -14.41500 -14.14625 -13.84178 -13.68573 -13.60838 -13.50566 -13.13670 -12.86615 -12.82618 -12.77289 -12.71774 -12.64576 -12.04008 -11.91593 -11.88444 -11.82288 -11.73864 -11.66281 -11.26454 -10.93888 -10.89734 -10.69067 -10.14471 -9.91882 -9.43747 -8.81690 -7.69970 -5.09687 -0.69891 -0.27066 1.02823 1.05542 1.53250 1.55395 1.63747 1.73493 2.16005 2.55483 2.65578 2.94154 3.34263 3.43927 3.46612 3.50302 3.68488 3.82879 3.97331 4.05059 4.14216 4.24448 4.32323 4.36753 4.44603 4.50650 4.55019 4.64898 4.67941 4.73677 4.76714 4.82597 4.88813 4.95388 5.05380 5.09642 5.14366 5.22348 5.24111 5.33076 5.43721 5.56098 5.57799 5.64411 5.75459 5.95452 6.30977 6.63444 6.78427 7.11445 7.24227 7.78773 8.64593 9.37850 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012486 B = 0.003148 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2242.036030 B = 8892.040475 C =10620.496211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.385 5.385 3 N -0.026 5.026 4 N -0.242 5.242 5 C -0.048 4.048 6 C 0.020 3.980 7 C -0.147 4.147 8 C 0.559 3.441 9 O -0.580 6.580 10 N -0.693 5.693 11 C 0.139 3.861 12 H 0.088 0.912 13 C -0.135 4.135 14 C 0.142 3.858 15 H 0.113 0.887 16 C -0.134 4.134 17 C -0.120 4.120 18 C 0.129 3.871 19 H 0.108 0.892 20 N -0.608 5.608 21 C -0.210 4.210 22 H 0.091 0.909 23 C -0.067 4.067 24 N -0.949 5.949 25 Si 0.971 3.029 26 H -0.261 1.261 27 H -0.299 1.299 28 H -0.305 1.305 29 C -0.038 4.038 30 C -0.106 4.106 31 C 0.100 3.900 32 H 0.103 0.897 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.141 0.859 36 H 0.409 0.591 37 H 0.036 0.964 38 H 0.064 0.936 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.243 0.757 44 H 0.163 0.837 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.848 12.602 8.396 17.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.180 5.180 3 N -0.007 5.007 4 N -0.120 5.120 5 C -0.172 4.172 6 C -0.004 4.004 7 C -0.154 4.154 8 C 0.347 3.653 9 O -0.462 6.462 10 N -0.343 5.343 11 C 0.032 3.968 12 H 0.106 0.894 13 C -0.175 4.175 14 C 0.036 3.964 15 H 0.130 0.870 16 C -0.173 4.173 17 C -0.160 4.160 18 C 0.021 3.979 19 H 0.126 0.874 20 N -0.329 5.329 21 C -0.338 4.338 22 H 0.109 0.891 23 C -0.260 4.260 24 N -0.599 5.599 25 Si 0.802 3.198 26 H -0.185 1.185 27 H -0.227 1.227 28 H -0.233 1.233 29 C -0.060 4.060 30 C -0.128 4.128 31 C -0.023 4.023 32 H 0.121 0.879 33 H 0.128 0.872 34 H 0.138 0.862 35 H 0.159 0.841 36 H 0.246 0.754 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.053 0.947 44 H 0.180 0.820 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -8.364 14.287 8.261 18.502 hybrid contribution -0.986 -1.586 -0.740 2.009 sum -9.350 12.701 7.521 17.473 Atomic orbital electron populations 1.22569 0.69539 1.07331 1.06117 1.50497 1.09416 1.02376 1.55730 1.81518 0.94140 1.08853 1.16148 1.74829 1.12088 1.11225 1.13862 1.19938 0.94240 0.90075 1.12943 1.20462 0.98183 0.90313 0.91411 1.19638 0.94152 0.92553 1.09012 1.18319 0.88311 0.82778 0.75920 1.90736 1.23756 1.79188 1.52525 1.45826 1.11126 1.04640 1.72690 1.22474 0.88741 0.89094 0.96451 0.89375 1.23338 0.99322 0.98821 0.96066 1.23502 0.84823 0.91493 0.96599 0.86967 1.22978 0.98476 0.99286 0.96602 1.22845 0.97162 0.99755 0.96229 1.23351 0.93907 0.89830 0.90770 0.87390 1.46694 1.11626 1.64798 1.09796 1.19424 0.89636 1.27512 0.97265 0.89150 1.25411 1.01067 1.03114 0.96398 1.69756 1.34939 1.51202 1.04017 0.85093 0.80134 0.76909 0.77681 1.18547 1.22660 1.23337 1.21207 0.89862 1.01563 0.93402 1.20073 1.02178 0.86528 1.03977 1.19748 0.90256 0.91619 1.00677 0.87873 0.87213 0.86196 0.84143 0.75409 0.94517 0.91766 0.94461 0.91330 0.90118 0.92132 0.94714 0.81997 0.80256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.53 11.52 127.77 1.47 2.00 16 2 N -0.39 -7.02 4.11 -360.93 -1.48 -8.50 16 3 N -0.03 -0.67 13.72 37.02 0.51 -0.16 16 4 N -0.24 -7.01 12.40 -52.21 -0.65 -7.66 16 5 C -0.05 -1.28 7.26 39.57 0.29 -0.99 16 6 C 0.02 0.54 9.64 22.80 0.22 0.76 16 7 C -0.15 -3.83 5.87 -20.13 -0.12 -3.95 16 8 C 0.56 17.76 7.76 86.75 0.67 18.44 16 9 O -0.58 -22.36 15.96 -3.95 -0.06 -22.42 16 10 N -0.69 -21.33 5.02 -438.00 -2.20 -23.53 16 11 C 0.14 4.70 2.80 46.59 0.13 4.83 16 12 H 0.09 2.95 7.23 -2.39 -0.02 2.94 16 13 C -0.14 -5.28 6.23 32.21 0.20 -5.08 16 14 C 0.14 6.27 4.69 46.24 0.22 6.48 16 15 H 0.11 5.91 5.57 -2.39 -0.01 5.90 16 16 C -0.13 -4.99 6.44 32.21 0.21 -4.79 16 17 C -0.12 -3.86 6.44 32.21 0.21 -3.65 16 18 C 0.13 4.42 5.06 46.21 0.23 4.65 16 19 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 20 N -0.61 -26.68 2.98 -615.44 -1.84 -28.52 16 21 C -0.21 -10.14 10.59 84.03 0.89 -9.25 16 22 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.07 -3.47 5.50 84.86 0.47 -3.00 16 24 N -0.95 -52.84 10.48 21.65 0.23 -52.61 16 25 Si 0.97 41.98 29.55 68.60 2.03 44.00 16 26 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 27 H -0.30 -13.13 7.11 99.48 0.71 -12.43 16 28 H -0.31 -13.77 7.11 99.48 0.71 -13.06 16 29 C -0.04 -0.74 9.46 22.30 0.21 -0.53 16 30 C -0.11 -1.66 9.97 22.07 0.22 -1.44 16 31 C 0.10 2.08 6.93 39.16 0.27 2.35 16 32 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.12 0.18 8.14 -2.38 -0.02 0.16 16 35 H 0.14 4.05 7.62 -2.91 -0.02 4.03 16 36 H 0.41 11.44 6.65 -92.70 -0.62 10.82 16 37 H 0.04 1.58 7.98 -2.39 -0.02 1.56 16 38 H 0.06 2.35 7.82 -2.38 -0.02 2.33 16 39 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 2.25 7.82 -2.39 -0.02 2.23 16 41 H 0.08 2.17 7.82 -2.38 -0.02 2.15 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.24 13.43 8.31 -92.71 -0.77 12.66 16 44 H 0.16 2.58 6.36 -2.91 -0.02 2.57 16 45 H 0.18 1.32 8.06 -2.92 -0.02 1.30 16 Total: -1.00 -70.32 369.61 2.75 -67.57 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.42 Total: 25.00 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.79 Total: 6.83 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -5.43 Total: -120.98 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.06 Total: -22.42 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -70.32 2.75 -67.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097338857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.903 kcal (2) G-P(sol) polarization free energy of solvation -70.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds