Wall clock time and date at job start Wed Apr 1 2020 01:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39806 * 125.33742 * 2 1 4 4 C 1.30204 * 110.13071 * 179.97438 * 3 2 1 5 5 C 1.45968 * 107.58678 * 359.97438 * 4 3 2 6 6 C 1.39652 * 134.12308 * 180.02562 * 5 4 3 7 7 C 1.39513 * 117.95146 * 179.97438 * 6 5 4 8 8 C 1.47684 * 120.40472 * 179.97438 * 7 6 5 9 9 O 1.21572 * 120.00676 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99687 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00115 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.68484 * 36.52433 * 11 10 8 13 13 C 1.54854 * 110.62455 * 273.54182 * 11 10 8 14 14 C 1.55845 * 103.44376 * 241.51161 * 13 11 10 15 15 H 1.09004 * 115.56130 * 158.81100 * 14 13 11 16 16 C 1.55844 * 105.74033 * 287.98427 * 14 13 11 17 17 C 1.55481 * 103.32318 * 71.92783 * 16 14 13 18 18 C 1.55843 * 103.32873 * 359.97438 * 17 16 14 19 19 H 1.09000 * 116.12700 * 159.23037 * 18 17 16 20 20 N 1.50232 * 101.05329 * 32.93634 * 14 13 11 21 21 C 1.36937 * 130.83785 * 125.28355 * 20 14 13 22 22 H 1.07993 * 120.00060 * 350.75954 * 21 20 14 23 23 C 1.38816 * 119.99964 * 170.76105 * 21 20 14 24 24 N 1.31615 * 119.99940 * 157.54322 * 23 21 20 25 25 Si 1.86802 * 119.99769 * 337.82276 * 23 21 20 26 26 H 1.48495 * 109.47393 * 92.07688 * 25 23 21 27 27 H 1.48507 * 109.46950 * 212.07217 * 25 23 21 28 28 H 1.48494 * 109.47147 * 332.06989 * 25 23 21 29 29 C 1.40175 * 119.18108 * 0.25155 * 7 6 5 30 30 N 1.31190 * 121.37709 * 359.49916 * 29 7 6 31 31 C 1.32934 * 121.83969 * 0.48249 * 30 29 7 32 32 H 1.09003 * 109.46998 * 89.97796 * 1 2 3 33 33 H 1.08998 * 109.46839 * 209.97911 * 1 2 3 34 34 H 1.08996 * 109.47326 * 329.97885 * 1 2 3 35 35 H 1.07996 * 126.20505 * 179.97438 * 4 3 2 36 36 H 1.08003 * 121.02364 * 359.97438 * 6 5 4 37 37 H 0.97002 * 119.99930 * 359.97438 * 10 8 7 38 38 H 1.08994 * 110.63029 * 123.01726 * 13 11 10 39 39 H 1.09001 * 110.62408 * 359.97438 * 13 11 10 40 40 H 1.09001 * 110.62605 * 190.50060 * 16 14 13 41 41 H 1.09003 * 110.62919 * 313.52419 * 16 14 13 42 42 H 1.08998 * 110.60930 * 241.58163 * 17 16 14 43 43 H 1.09000 * 110.89274 * 118.55454 * 17 16 14 44 44 H 0.97009 * 119.99673 * 180.02562 * 24 23 21 45 45 H 1.08004 * 119.31155 * 179.72273 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1405 0.0000 4 6 3.5301 0.7990 0.0005 5 6 3.5907 -0.6595 0.0016 6 6 4.6327 -1.5893 0.0029 7 6 4.3001 -2.9442 0.0041 8 6 5.3589 -3.9737 0.0050 9 8 6.5287 -3.6427 0.0042 10 7 5.0283 -5.2803 0.0057 11 6 6.0786 -6.3017 0.0071 12 1 6.9255 -5.9822 0.6144 13 6 6.5330 -6.6188 -1.4388 14 6 6.1864 -8.1291 -1.6046 15 1 6.0844 -8.4782 -2.6322 16 6 7.2235 -8.8991 -0.7327 17 6 6.7696 -8.5887 0.7217 18 6 5.5232 -7.6748 0.5217 19 1 4.8334 -7.6129 1.3634 20 7 4.9551 -8.2374 -0.7506 21 6 3.7001 -8.7004 -1.0435 22 1 3.4328 -8.9265 -2.0651 23 6 2.7715 -8.8791 -0.0273 24 7 1.4851 -8.8875 -0.3053 25 14 3.3476 -9.0997 1.7360 26 1 3.3955 -7.7775 2.4103 27 1 2.4026 -9.9894 2.4577 28 1 4.7023 -9.7077 1.7417 29 6 2.9486 -3.3162 -0.0014 30 7 1.9928 -2.4176 0.0021 31 6 2.2554 -1.1144 0.0015 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5135 34 1 -0.3634 0.8897 0.5141 35 1 4.3742 1.4725 0.0003 36 1 5.6642 -1.2693 0.0030 37 1 4.0949 -5.5444 0.0060 38 1 7.6052 -6.4566 -1.5487 39 1 5.9767 -6.0164 -2.1570 40 1 7.1739 -9.9695 -0.9327 41 1 8.2303 -8.5205 -0.9095 42 1 7.5523 -8.0570 1.2626 43 1 6.4952 -9.5036 1.2468 44 1 0.8362 -9.0119 0.4050 45 1 2.6888 -4.3645 -0.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098106776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:44 Heat of formation + Delta-G solvation = 131.440937 kcal Electronic energy + Delta-G solvation = -29705.801797 eV Core-core repulsion = 25726.881910 eV Total energy + Delta-G solvation = -3978.919887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.77814 -40.09872 -38.93906 -37.65413 -34.12003 -33.90163 -32.64023 -31.85019 -30.62609 -29.69623 -29.25783 -28.23315 -26.99470 -24.30550 -24.00197 -23.80527 -21.70701 -21.13812 -20.30630 -20.21779 -18.96835 -17.95165 -17.86975 -17.09254 -16.90443 -16.07177 -15.85571 -15.76847 -15.05143 -14.63167 -14.41692 -14.25785 -13.80411 -13.77335 -13.56079 -13.40609 -13.22234 -13.13042 -12.77480 -12.64991 -12.46280 -12.32937 -11.60914 -11.47387 -11.37131 -11.15792 -11.07052 -10.91974 -10.65651 -10.40201 -10.32455 -10.13085 -9.82786 -9.64988 -9.39129 -9.34493 -9.26279 -8.95126 -8.70090 -8.43226 -7.31844 -5.99785 -3.25279 0.57348 0.71606 1.88710 2.18729 2.95622 3.21165 3.38834 3.40490 3.43978 3.79125 3.91739 4.05070 4.35305 4.44951 4.58513 4.68009 4.74492 4.92841 5.00741 5.04024 5.11221 5.19904 5.27811 5.29664 5.34073 5.41182 5.57895 5.66378 5.77373 5.83017 5.89801 5.91728 5.97648 6.01481 6.17032 6.20820 6.21903 6.40035 6.46269 6.52811 6.63136 6.71242 6.83407 6.98129 7.15085 7.30166 7.68148 7.85768 8.23771 8.45741 8.65099 9.57003 10.17444 11.16150 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003410 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.606519 B = 8210.108654 C = 9536.124907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.394 5.394 3 N -0.244 5.244 4 C 0.095 3.905 5 C -0.242 4.242 6 C 0.070 3.930 7 C -0.229 4.229 8 C 0.568 3.432 9 O -0.550 6.550 10 N -0.702 5.702 11 C 0.133 3.867 12 H 0.085 0.915 13 C -0.135 4.135 14 C 0.140 3.860 15 H 0.095 0.905 16 C -0.132 4.132 17 C -0.133 4.133 18 C 0.113 3.887 19 H 0.096 0.904 20 N -0.606 5.606 21 C -0.225 4.225 22 H 0.098 0.902 23 C 0.017 3.983 24 N -0.909 5.909 25 Si 0.864 3.136 26 H -0.290 1.290 27 H -0.304 1.304 28 H -0.260 1.260 29 C 0.211 3.789 30 N -0.502 5.502 31 C 0.328 3.672 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.205 0.795 36 H 0.154 0.846 37 H 0.406 0.594 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.069 0.931 44 H 0.263 0.737 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.294 14.958 1.136 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.184 5.184 3 N -0.055 5.055 4 C -0.104 4.104 5 C -0.252 4.252 6 C 0.041 3.959 7 C -0.236 4.236 8 C 0.355 3.645 9 O -0.429 6.429 10 N -0.351 5.351 11 C 0.026 3.974 12 H 0.103 0.897 13 C -0.176 4.176 14 C 0.033 3.967 15 H 0.113 0.887 16 C -0.171 4.171 17 C -0.172 4.172 18 C 0.006 3.994 19 H 0.113 0.887 20 N -0.328 5.328 21 C -0.351 4.351 22 H 0.116 0.884 23 C -0.181 4.181 24 N -0.553 5.553 25 Si 0.696 3.304 26 H -0.219 1.219 27 H -0.232 1.232 28 H -0.185 1.185 29 C 0.040 3.960 30 N -0.216 5.216 31 C 0.089 3.911 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.221 0.779 36 H 0.172 0.828 37 H 0.243 0.757 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.073 0.927 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 3.779 15.864 1.127 16.347 hybrid contribution 0.869 -0.798 1.105 1.617 sum 4.649 15.066 2.232 15.924 Atomic orbital electron populations 1.21860 0.73158 1.04568 1.03480 1.48103 1.06428 1.00016 1.63838 1.76708 1.02733 1.07514 1.18575 1.25103 0.94856 0.92542 0.97883 1.20454 0.94077 0.94747 1.15903 1.21132 0.99174 0.89957 0.85631 1.20760 0.95079 0.94621 1.13154 1.17778 0.87809 0.82381 0.76579 1.90733 1.19047 1.81698 1.51456 1.45922 1.11360 1.04779 1.73066 1.22672 0.89546 0.87771 0.97365 0.89681 1.23338 0.99762 0.98258 0.96216 1.22966 0.86063 0.92707 0.94980 0.88703 1.23079 0.97935 1.00429 0.95676 1.23133 0.97061 0.99969 0.97082 1.23590 0.93717 0.90775 0.91343 0.88666 1.46931 1.07510 1.71588 1.06816 1.18660 0.83506 1.38041 0.94876 0.88427 1.24724 0.94811 1.01466 0.97064 1.69831 0.99667 1.53171 1.32676 0.87234 0.78733 0.77541 0.86901 1.21858 1.23236 1.18538 1.23085 0.86847 0.98722 0.87352 1.66746 1.37383 0.98331 1.19122 1.19189 0.88641 0.88278 0.94975 0.90912 0.88903 0.89408 0.77886 0.82837 0.75724 0.91690 0.91552 0.92087 0.92314 0.92238 0.91219 0.92739 0.80870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.98 11.43 59.85 0.68 1.67 16 2 N -0.39 -4.90 4.03 -67.18 -0.27 -5.17 16 3 N -0.24 -2.85 12.39 31.87 0.39 -2.45 16 4 C 0.09 0.94 12.30 -15.15 -0.19 0.76 16 5 C -0.24 -3.01 6.36 -105.20 -0.67 -3.68 16 6 C 0.07 0.88 9.76 -38.58 -0.38 0.50 16 7 C -0.23 -3.29 5.89 -104.84 -0.62 -3.91 16 8 C 0.57 9.27 7.77 -12.40 -0.10 9.17 16 9 O -0.55 -10.04 16.13 5.30 0.09 -9.95 16 10 N -0.70 -11.87 5.06 -51.87 -0.26 -12.13 16 11 C 0.13 2.30 2.76 -64.90 -0.18 2.12 16 12 H 0.09 1.44 7.43 -51.93 -0.39 1.05 16 13 C -0.14 -2.23 6.24 -24.23 -0.15 -2.38 16 14 C 0.14 2.47 5.43 -62.80 -0.34 2.13 16 15 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 16 C -0.13 -2.08 6.49 -23.89 -0.16 -2.24 16 17 C -0.13 -2.27 6.28 -23.90 -0.15 -2.42 16 18 C 0.11 2.19 3.19 -62.25 -0.20 1.99 16 19 H 0.10 2.02 3.55 -51.93 -0.18 1.83 16 20 N -0.61 -13.01 2.82 -145.22 -0.41 -13.42 16 21 C -0.22 -5.78 10.93 -15.06 -0.16 -5.95 16 22 H 0.10 2.71 8.06 -52.49 -0.42 2.29 16 23 C 0.02 0.46 5.49 -17.43 -0.10 0.37 16 24 N -0.91 -26.31 13.97 55.49 0.78 -25.54 16 25 Si 0.86 20.65 24.65 -169.99 -4.19 16.45 16 26 H -0.29 -6.72 6.67 56.52 0.38 -6.34 16 27 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 28 H -0.26 -5.92 4.88 56.52 0.28 -5.64 16 29 C 0.21 3.07 10.69 -17.10 -0.18 2.89 16 30 N -0.50 -7.59 10.37 -12.03 -0.12 -7.71 16 31 C 0.33 4.63 7.96 -156.09 -1.24 3.39 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.15 1.66 7.72 -52.48 -0.41 1.26 16 37 H 0.41 7.04 6.67 -40.82 -0.27 6.76 16 38 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 39 H 0.07 1.15 7.98 -51.93 -0.41 0.74 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 42 H 0.06 0.87 7.88 -51.93 -0.41 0.46 16 43 H 0.07 1.27 6.50 -51.93 -0.34 0.94 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.17 2.46 6.39 -52.48 -0.34 2.12 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -32.27 361.99 -8.47 -40.74 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.80 Total: 9.31 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -4.12 Total: 4.41 kcal Atomic # 7 Polarization: -66.52 SS G_CDS: 0.10 Total: -66.42 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.19 Total: 16.45 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.27 -8.47 -40.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098106776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.180 kcal (2) G-P(sol) polarization free energy of solvation -32.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds