Wall clock time and date at job start Wed Apr 1 2020 01:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39806 * 125.33742 * 2 1 4 4 C 1.30204 * 110.13071 * 179.97438 * 3 2 1 5 5 C 1.45968 * 107.58678 * 359.97438 * 4 3 2 6 6 C 1.39652 * 134.12308 * 180.02562 * 5 4 3 7 7 C 1.39513 * 117.95146 * 179.97438 * 6 5 4 8 8 C 1.47684 * 120.40472 * 179.97438 * 7 6 5 9 9 O 1.21572 * 120.00676 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99687 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00115 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.68484 * 36.52433 * 11 10 8 13 13 C 1.54854 * 110.62455 * 273.54182 * 11 10 8 14 14 C 1.55845 * 103.44376 * 241.51161 * 13 11 10 15 15 H 1.09004 * 115.56130 * 158.81100 * 14 13 11 16 16 C 1.55844 * 105.74033 * 287.98427 * 14 13 11 17 17 C 1.55481 * 103.32318 * 71.92783 * 16 14 13 18 18 C 1.55843 * 103.32873 * 359.97438 * 17 16 14 19 19 H 1.09000 * 116.12700 * 159.23037 * 18 17 16 20 20 N 1.50232 * 101.05329 * 32.93634 * 14 13 11 21 21 C 1.36937 * 130.83785 * 125.28355 * 20 14 13 22 22 H 1.07993 * 120.00060 * 350.75954 * 21 20 14 23 23 C 1.38816 * 119.99964 * 170.76105 * 21 20 14 24 24 N 1.31615 * 119.99940 * 157.54322 * 23 21 20 25 25 Si 1.86802 * 119.99769 * 337.82276 * 23 21 20 26 26 H 1.48495 * 109.47393 * 92.07688 * 25 23 21 27 27 H 1.48507 * 109.46950 * 212.07217 * 25 23 21 28 28 H 1.48494 * 109.47147 * 332.06989 * 25 23 21 29 29 C 1.40175 * 119.18108 * 0.25155 * 7 6 5 30 30 N 1.31190 * 121.37709 * 359.49916 * 29 7 6 31 31 C 1.32934 * 121.83969 * 0.48249 * 30 29 7 32 32 H 1.09003 * 109.46998 * 89.97796 * 1 2 3 33 33 H 1.08998 * 109.46839 * 209.97911 * 1 2 3 34 34 H 1.08996 * 109.47326 * 329.97885 * 1 2 3 35 35 H 1.07996 * 126.20505 * 179.97438 * 4 3 2 36 36 H 1.08003 * 121.02364 * 359.97438 * 6 5 4 37 37 H 0.97002 * 119.99930 * 359.97438 * 10 8 7 38 38 H 1.08994 * 110.63029 * 123.01726 * 13 11 10 39 39 H 1.09001 * 110.62408 * 359.97438 * 13 11 10 40 40 H 1.09001 * 110.62605 * 190.50060 * 16 14 13 41 41 H 1.09003 * 110.62919 * 313.52419 * 16 14 13 42 42 H 1.08998 * 110.60930 * 241.58163 * 17 16 14 43 43 H 1.09000 * 110.89274 * 118.55454 * 17 16 14 44 44 H 0.97009 * 119.99673 * 180.02562 * 24 23 21 45 45 H 1.08004 * 119.31155 * 179.72273 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2736 1.1405 0.0000 4 6 3.5301 0.7990 0.0005 5 6 3.5907 -0.6595 0.0016 6 6 4.6327 -1.5893 0.0029 7 6 4.3001 -2.9442 0.0041 8 6 5.3589 -3.9737 0.0050 9 8 6.5287 -3.6427 0.0042 10 7 5.0283 -5.2803 0.0057 11 6 6.0786 -6.3017 0.0071 12 1 6.9255 -5.9822 0.6144 13 6 6.5330 -6.6188 -1.4388 14 6 6.1864 -8.1291 -1.6046 15 1 6.0844 -8.4782 -2.6322 16 6 7.2235 -8.8991 -0.7327 17 6 6.7696 -8.5887 0.7217 18 6 5.5232 -7.6748 0.5217 19 1 4.8334 -7.6129 1.3634 20 7 4.9551 -8.2374 -0.7506 21 6 3.7001 -8.7004 -1.0435 22 1 3.4328 -8.9265 -2.0651 23 6 2.7715 -8.8791 -0.0273 24 7 1.4851 -8.8875 -0.3053 25 14 3.3476 -9.0997 1.7360 26 1 3.3955 -7.7775 2.4103 27 1 2.4026 -9.9894 2.4577 28 1 4.7023 -9.7077 1.7417 29 6 2.9486 -3.3162 -0.0014 30 7 1.9928 -2.4176 0.0021 31 6 2.2554 -1.1144 0.0015 32 1 -0.3633 0.0004 -1.0277 33 1 -0.3633 -0.8902 0.5135 34 1 -0.3634 0.8897 0.5141 35 1 4.3742 1.4725 0.0003 36 1 5.6642 -1.2693 0.0030 37 1 4.0949 -5.5444 0.0060 38 1 7.6052 -6.4566 -1.5487 39 1 5.9767 -6.0164 -2.1570 40 1 7.1739 -9.9695 -0.9327 41 1 8.2303 -8.5205 -0.9095 42 1 7.5523 -8.0570 1.2626 43 1 6.4952 -9.5036 1.2468 44 1 0.8362 -9.0119 0.4050 45 1 2.6888 -4.3645 -0.0050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098106776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:43 Heat of formation + Delta-G solvation = 109.918399 kcal Electronic energy + Delta-G solvation = -29706.735084 eV Core-core repulsion = 25726.881910 eV Total energy + Delta-G solvation = -3979.853174 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.74479 -41.45124 -40.21400 -38.78264 -35.37655 -34.92822 -34.56411 -32.84802 -31.69778 -31.43860 -30.64358 -29.53009 -27.87100 -25.92307 -25.16024 -24.95781 -22.94496 -22.02167 -21.92802 -21.45772 -20.39825 -19.20028 -18.84103 -18.81277 -18.17058 -17.28139 -17.00832 -16.92714 -16.44897 -15.89891 -15.63656 -15.38645 -15.26414 -15.11839 -14.79488 -14.63350 -14.40748 -14.22696 -14.17379 -13.88609 -13.47623 -13.37285 -13.23874 -12.93524 -12.80379 -12.77232 -12.36189 -12.28150 -11.93220 -11.81205 -11.64165 -11.53356 -11.33361 -11.18251 -10.94090 -10.84224 -10.57577 -10.26180 -10.04468 -9.45568 -9.16536 -8.07580 -5.27231 -0.40248 -0.36571 1.02171 1.28617 1.32946 1.44236 1.50833 1.76258 2.14514 2.46459 2.67382 2.96607 2.98265 3.14927 3.22084 3.46316 3.60743 3.69612 3.77402 3.88764 3.94495 4.08844 4.22196 4.31217 4.33832 4.35397 4.36729 4.44503 4.52801 4.59984 4.61739 4.66351 4.76186 4.82712 4.88025 5.07971 5.12361 5.16709 5.27541 5.31915 5.38159 5.45539 5.59463 5.61433 5.67337 6.17720 6.24783 6.50960 6.66230 6.67902 7.14552 7.54895 8.28426 9.12164 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014084 B = 0.003410 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.606519 B = 8210.108654 C = 9536.124907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.401 5.401 3 N -0.259 5.259 4 C 0.115 3.885 5 C -0.248 4.248 6 C 0.085 3.915 7 C -0.243 4.243 8 C 0.575 3.425 9 O -0.567 6.567 10 N -0.708 5.708 11 C 0.138 3.862 12 H 0.099 0.901 13 C -0.125 4.125 14 C 0.133 3.867 15 H 0.096 0.904 16 C -0.121 4.121 17 C -0.130 4.130 18 C 0.103 3.897 19 H 0.077 0.923 20 N -0.626 5.626 21 C -0.200 4.200 22 H 0.065 0.935 23 C -0.038 4.038 24 N -0.959 5.959 25 Si 0.920 3.080 26 H -0.282 1.282 27 H -0.325 1.325 28 H -0.240 1.240 29 C 0.205 3.795 30 N -0.524 5.524 31 C 0.307 3.693 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.251 0.749 36 H 0.176 0.824 37 H 0.402 0.598 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.056 0.944 44 H 0.257 0.743 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.468 17.033 1.690 19.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.191 5.191 3 N -0.070 5.070 4 C -0.083 4.083 5 C -0.258 4.258 6 C 0.056 3.944 7 C -0.250 4.250 8 C 0.363 3.637 9 O -0.448 6.448 10 N -0.357 5.357 11 C 0.032 3.968 12 H 0.117 0.883 13 C -0.165 4.165 14 C 0.028 3.972 15 H 0.114 0.886 16 C -0.160 4.160 17 C -0.170 4.170 18 C -0.004 4.004 19 H 0.094 0.906 20 N -0.349 5.349 21 C -0.328 4.328 22 H 0.083 0.917 23 C -0.232 4.232 24 N -0.608 5.608 25 Si 0.752 3.248 26 H -0.211 1.211 27 H -0.255 1.255 28 H -0.164 1.164 29 C 0.034 3.966 30 N -0.239 5.239 31 C 0.067 3.933 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.127 0.873 35 H 0.267 0.733 36 H 0.193 0.807 37 H 0.237 0.763 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.075 0.925 44 H 0.066 0.934 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 7.014 17.967 1.679 19.361 hybrid contribution -0.107 -1.323 0.822 1.561 sum 6.907 16.645 2.501 18.194 Atomic orbital electron populations 1.22069 0.71831 1.05428 1.04321 1.48456 1.07455 0.99698 1.63446 1.76729 1.03452 1.07292 1.19560 1.25871 0.95464 0.91676 0.95321 1.20718 0.93231 0.96171 1.15652 1.21337 1.00222 0.89056 0.83743 1.20599 0.94221 0.95088 1.15124 1.17900 0.87880 0.82246 0.75692 1.90710 1.19716 1.81881 1.52523 1.45996 1.11096 1.05248 1.73336 1.22646 0.89706 0.86645 0.97850 0.88331 1.23268 1.01213 0.96753 0.95238 1.23228 0.84945 0.94018 0.95057 0.88622 1.23025 0.98874 1.00091 0.93978 1.23138 0.96609 0.99067 0.98152 1.23746 0.94290 0.92536 0.89799 0.90591 1.46986 1.07343 1.71673 1.08933 1.18514 0.85398 1.35572 0.93349 0.91689 1.25215 0.94704 1.02834 1.00430 1.69963 1.00894 1.56432 1.33471 0.86322 0.78504 0.77355 0.82595 1.21075 1.25483 1.16397 1.22983 0.87236 0.98520 0.87840 1.66683 1.37837 0.99225 1.20126 1.19527 0.90148 0.88294 0.95318 0.90081 0.89283 0.87341 0.73270 0.80658 0.76283 0.88856 0.92916 0.92366 0.88672 0.88964 0.92530 0.93395 0.81651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.78 11.43 127.77 1.46 3.24 16 2 N -0.40 -9.54 4.03 -366.44 -1.48 -11.02 16 3 N -0.26 -5.47 12.39 -53.08 -0.66 -6.13 16 4 C 0.11 1.92 12.30 86.94 1.07 2.99 16 5 C -0.25 -5.69 6.36 -20.24 -0.13 -5.81 16 6 C 0.08 1.97 9.76 22.92 0.22 2.19 16 7 C -0.24 -6.84 5.89 -20.00 -0.12 -6.95 16 8 C 0.57 18.12 7.77 86.74 0.67 18.79 16 9 O -0.57 -19.46 16.13 -3.94 -0.06 -19.52 16 10 N -0.71 -23.49 5.06 -436.30 -2.21 -25.70 16 11 C 0.14 4.46 2.76 46.96 0.13 4.59 16 12 H 0.10 2.98 7.43 -2.39 -0.02 2.96 16 13 C -0.12 -3.78 6.24 32.21 0.20 -3.58 16 14 C 0.13 4.44 5.43 46.23 0.25 4.69 16 15 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 16 C -0.12 -3.37 6.49 32.43 0.21 -3.16 16 17 C -0.13 -4.00 6.28 32.43 0.20 -3.80 16 18 C 0.10 3.80 3.19 46.57 0.15 3.95 16 19 H 0.08 3.13 3.55 -2.39 -0.01 3.12 16 20 N -0.63 -26.57 2.82 -613.37 -1.73 -28.30 16 21 C -0.20 -10.60 10.93 84.03 0.92 -9.68 16 22 H 0.07 3.79 8.06 -2.91 -0.02 3.77 16 23 C -0.04 -2.13 5.49 84.86 0.47 -1.66 16 24 N -0.96 -58.23 13.97 21.65 0.30 -57.93 16 25 Si 0.92 43.82 24.65 68.60 1.69 45.51 16 26 H -0.28 -12.90 6.67 99.48 0.66 -12.24 16 27 H -0.32 -16.43 7.11 99.48 0.71 -15.72 16 28 H -0.24 -10.46 4.88 99.48 0.49 -9.98 16 29 C 0.20 6.14 10.69 85.26 0.91 7.05 16 30 N -0.52 -16.18 10.37 -191.97 -1.99 -18.17 16 31 C 0.31 8.48 7.96 134.18 1.07 9.55 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.56 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.25 1.46 8.06 -2.91 -0.02 1.44 16 36 H 0.18 3.25 7.72 -2.91 -0.02 3.23 16 37 H 0.40 14.21 6.67 -92.71 -0.62 13.59 16 38 H 0.09 2.34 7.85 -2.39 -0.02 2.32 16 39 H 0.05 1.75 7.98 -2.39 -0.02 1.73 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.09 2.02 7.85 -2.39 -0.02 2.00 16 42 H 0.09 2.25 7.88 -2.39 -0.02 2.23 16 43 H 0.06 1.89 6.50 -2.39 -0.02 1.88 16 44 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 45 H 0.17 5.04 6.39 -2.91 -0.02 5.03 16 Total: -1.00 -71.99 361.99 1.72 -70.27 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.16 Total: 28.60 kcal Atomic # 6 Polarization: 14.71 SS G_CDS: 7.69 Total: 22.40 kcal Atomic # 7 Polarization: -139.49 SS G_CDS: -7.76 Total: -147.25 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.06 Total: -19.52 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.69 Total: 45.51 kcal Total: -71.99 1.72 -70.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098106776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.188 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds