Wall clock time and date at job start Wed Apr 1 2020 01:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28811 * 125.94174 * 2 1 4 4 N 1.28643 * 111.79127 * 180.02562 * 3 2 1 5 5 C 1.34745 * 109.29478 * 0.02562 * 4 3 2 6 6 C 1.39909 * 134.59430 * 179.97438 * 5 4 3 7 7 C 1.36165 * 119.97883 * 179.73726 * 6 5 4 8 8 C 1.40254 * 120.55173 * 0.52535 * 7 6 5 9 9 C 1.47725 * 119.87912 * 179.75637 * 8 7 6 10 10 O 1.21567 * 119.99953 * 179.72516 * 9 8 7 11 11 N 1.34778 * 119.99758 * 359.71818 * 9 8 7 12 12 C 1.46497 * 120.00145 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.68308 * 32.01113 * 12 11 9 14 14 C 1.55476 * 110.76000 * 268.95946 * 12 11 9 15 15 C 1.55846 * 103.32799 * 241.51487 * 14 12 11 16 16 H 1.09004 * 116.13003 * 159.23349 * 15 14 12 17 17 C 1.56865 * 105.77333 * 288.56113 * 15 14 12 18 18 C 1.54847 * 103.35377 * 71.45641 * 17 15 14 19 19 C 1.55841 * 110.62970 * 154.99914 * 12 11 9 20 20 H 1.09008 * 115.55988 * 319.68133 * 19 12 11 21 21 N 1.50236 * 101.05204 * 85.55266 * 19 12 11 22 22 C 1.36939 * 130.84325 * 233.93710 * 21 19 12 23 23 H 1.08005 * 119.99349 * 10.13685 * 22 21 19 24 24 C 1.38804 * 120.00247 * 190.14544 * 22 21 19 25 25 N 1.31621 * 119.99998 * 9.07525 * 24 22 21 26 26 Si 1.86800 * 120.00024 * 189.07868 * 24 22 21 27 27 H 1.48501 * 109.47290 * 84.98723 * 26 24 22 28 28 H 1.48503 * 109.47352 * 204.98676 * 26 24 22 29 29 H 1.48498 * 109.47058 * 324.98384 * 26 24 22 30 30 C 1.39159 * 120.24295 * 359.47362 * 8 7 6 31 31 C 1.37370 * 125.94389 * 180.02562 * 2 1 3 32 32 H 1.08991 * 109.47399 * 269.97543 * 1 2 3 33 33 H 1.09004 * 109.46975 * 29.98198 * 1 2 3 34 34 H 1.09004 * 109.46952 * 149.97072 * 1 2 3 35 35 H 1.08002 * 120.01464 * 0.02562 * 6 5 4 36 36 H 1.07994 * 119.72330 * 180.25017 * 7 6 5 37 37 H 0.97003 * 120.00014 * 0.02562 * 11 9 8 38 38 H 1.09001 * 110.61313 * 123.09594 * 14 12 11 39 39 H 1.09002 * 110.75398 * 359.97438 * 14 12 11 40 40 H 1.08999 * 110.43164 * 313.10349 * 17 15 14 41 41 H 1.09003 * 111.03773 * 190.09392 * 17 15 14 42 42 H 1.08999 * 110.62868 * 241.78217 * 18 17 15 43 43 H 1.09006 * 110.76370 * 118.82916 * 18 17 15 44 44 H 0.97005 * 119.99883 * 180.02562 * 25 24 22 45 45 H 1.08000 * 120.24885 * 180.28176 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7284 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6696 -1.5026 -0.0028 7 6 4.4456 -2.8457 0.0018 8 6 3.1369 -3.3502 -0.0030 9 6 2.9110 -4.8101 -0.0033 10 8 1.7776 -5.2498 -0.0025 11 7 3.9615 -5.6545 -0.0046 12 6 3.7375 -7.1023 -0.0054 13 1 2.8238 -7.3502 -0.5455 14 6 3.6803 -7.6519 1.4478 15 6 4.8760 -8.6501 1.5017 16 1 5.2525 -8.8950 2.4949 17 6 4.4461 -9.8780 0.6253 18 6 4.5004 -9.3229 -0.8192 19 6 4.9594 -7.8465 -0.6231 20 1 5.4059 -7.3727 -1.4975 21 7 5.8526 -7.9798 0.5775 22 6 7.1570 -7.6096 0.7689 23 1 7.6563 -6.9930 0.0361 24 6 7.8376 -8.0271 1.9043 25 7 7.2954 -8.9193 2.7058 26 14 9.5229 -7.3225 2.2951 27 1 9.3657 -6.0432 3.0326 28 1 10.2806 -8.2868 3.1325 29 1 10.2622 -7.0774 1.0307 30 6 2.0505 -2.4806 -0.0017 31 6 2.2714 -1.1121 -0.0005 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8898 -0.5143 35 1 5.6810 -1.1238 -0.0029 36 1 5.2825 -3.5282 0.0049 37 1 4.8658 -5.3037 -0.0050 38 1 2.7384 -8.1711 1.6250 39 1 3.8190 -6.8479 2.1706 40 1 3.4331 -10.1905 0.8789 41 1 5.1436 -10.7071 0.7445 42 1 3.5143 -9.3601 -1.2822 43 1 5.2254 -9.8742 -1.4181 44 1 7.7708 -9.2108 3.4995 45 1 1.0428 -2.8690 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098289257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:17 Heat of formation + Delta-G solvation = 131.840490 kcal Electronic energy + Delta-G solvation = -29416.642217 eV Core-core repulsion = 25437.739656 eV Total energy + Delta-G solvation = -3978.902561 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.40675 -40.08830 -38.77456 -37.33792 -35.13848 -34.00482 -32.56979 -31.04915 -30.95676 -29.13810 -28.89612 -28.24880 -27.71597 -24.77538 -24.12275 -23.72048 -21.62170 -21.37672 -20.33486 -19.86180 -18.84143 -18.23289 -17.89564 -17.03054 -16.98358 -16.56900 -16.00585 -15.11489 -14.86151 -14.61035 -14.49997 -14.28856 -13.97230 -13.84129 -13.57554 -13.54901 -13.22840 -12.88450 -12.35214 -12.26903 -12.10894 -11.92779 -11.85966 -11.31408 -11.18263 -11.04922 -10.97438 -10.93545 -10.91276 -10.56850 -10.36861 -10.11906 -10.02152 -9.91479 -9.43343 -9.23034 -9.21500 -8.86922 -8.68095 -8.50398 -6.96955 -5.82480 -3.18843 0.13587 0.96088 1.85818 1.91777 2.88872 3.31965 3.33915 3.39024 3.41444 3.65883 3.74438 4.11371 4.37352 4.38597 4.57963 4.63728 4.79556 4.83056 4.87669 5.05181 5.05661 5.16129 5.30031 5.59124 5.61629 5.64199 5.75284 5.84948 5.95236 6.00673 6.02599 6.05041 6.10729 6.18680 6.22685 6.33963 6.38192 6.42087 6.56258 6.68689 6.77080 6.91004 7.03508 7.26722 7.43946 7.72033 7.83155 8.05119 8.06932 8.41508 8.99637 9.64855 10.47875 11.29333 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.003043 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.344214 B = 9197.736702 C =10733.957541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.317 5.317 3 N -0.019 5.019 4 N -0.257 5.257 5 C 0.026 3.974 6 C -0.054 4.054 7 C -0.088 4.088 8 C -0.094 4.094 9 C 0.555 3.445 10 O -0.547 6.547 11 N -0.695 5.695 12 C 0.129 3.871 13 H 0.083 0.917 14 C -0.144 4.144 15 C 0.159 3.841 16 H 0.140 0.860 17 C -0.134 4.134 18 C -0.127 4.127 19 C 0.123 3.877 20 H 0.088 0.912 21 N -0.590 5.590 22 C -0.221 4.221 23 H 0.077 0.923 24 C -0.006 4.006 25 N -0.914 5.914 26 Si 0.911 3.089 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.282 1.282 30 C -0.038 4.038 31 C 0.013 3.987 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.100 0.900 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.404 0.596 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.057 0.943 44 H 0.254 0.746 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.190 11.706 -6.048 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.118 5.118 3 N 0.000 5.000 4 N -0.132 5.132 5 C -0.099 4.099 6 C -0.076 4.076 7 C -0.109 4.109 8 C -0.102 4.102 9 C 0.341 3.659 10 O -0.427 6.427 11 N -0.344 5.344 12 C 0.023 3.977 13 H 0.101 0.899 14 C -0.184 4.184 15 C 0.053 3.947 16 H 0.157 0.843 17 C -0.173 4.173 18 C -0.167 4.167 19 C 0.015 3.985 20 H 0.106 0.894 21 N -0.311 5.311 22 C -0.348 4.348 23 H 0.095 0.905 24 C -0.203 4.203 25 N -0.560 5.560 26 Si 0.742 3.258 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.208 1.208 30 C -0.061 4.061 31 C -0.106 4.106 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.163 0.837 36 H 0.163 0.837 37 H 0.240 0.760 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.715 12.910 -5.879 19.050 hybrid contribution 1.063 -0.607 0.257 1.251 sum -11.652 12.303 -5.622 17.853 Atomic orbital electron populations 1.22273 0.71976 1.06050 1.05139 1.47103 1.08836 1.03002 1.52834 1.77975 0.96965 1.12358 1.12722 1.75353 1.07514 1.11391 1.18918 1.20083 0.93266 0.91156 1.05440 1.19951 0.97661 0.91028 0.99009 1.21025 0.96353 0.95278 0.98257 1.19904 0.93210 0.93723 1.03314 1.17999 0.85315 0.85418 0.77177 1.90745 1.22505 1.78368 1.51033 1.45941 1.08884 1.07257 1.72327 1.22790 0.99251 0.77703 0.97943 0.89864 1.23544 0.99417 1.00276 0.95177 1.23615 0.85489 0.88389 0.97245 0.84271 1.23168 0.98800 0.99971 0.95366 1.22854 0.99061 0.97237 0.97594 1.23172 0.89882 0.93964 0.91488 0.89433 1.46553 1.08136 1.68883 1.07500 1.18950 0.85785 1.24946 1.05155 0.90475 1.24758 0.98303 0.98521 0.98702 1.69669 1.38289 1.32351 1.15721 0.86152 0.83470 0.78213 0.77984 1.21532 1.21768 1.20753 1.20026 1.00413 0.87515 0.98129 1.19616 0.91011 0.90808 1.09145 0.89031 0.87822 0.88188 0.83680 0.83696 0.75979 0.92519 0.92196 0.93598 0.92248 0.93129 0.92383 0.93541 0.83761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.40 59.85 0.68 1.12 16 2 N -0.32 -3.32 3.80 -65.54 -0.25 -3.57 16 3 N -0.02 -0.25 13.07 60.35 0.79 0.54 16 4 N -0.26 -3.65 12.42 32.09 0.40 -3.25 16 5 C 0.03 0.35 7.36 -84.95 -0.63 -0.28 16 6 C -0.05 -0.62 10.03 -39.70 -0.40 -1.02 16 7 C -0.09 -1.00 9.46 -39.57 -0.37 -1.37 16 8 C -0.09 -1.22 5.88 -104.92 -0.62 -1.83 16 9 C 0.55 8.55 7.77 -12.38 -0.10 8.45 16 10 O -0.55 -9.85 15.97 5.31 0.08 -9.77 16 11 N -0.69 -10.83 5.04 -52.05 -0.26 -11.10 16 12 C 0.13 2.23 2.84 -65.10 -0.18 2.04 16 13 H 0.08 1.44 7.26 -51.93 -0.38 1.06 16 14 C -0.14 -2.73 6.28 -23.90 -0.15 -2.88 16 15 C 0.16 3.45 4.64 -62.23 -0.29 3.16 16 16 H 0.14 3.49 5.88 -51.93 -0.31 3.19 16 17 C -0.13 -2.58 6.50 -23.67 -0.15 -2.73 16 18 C -0.13 -2.23 6.46 -24.24 -0.16 -2.39 16 19 C 0.12 2.26 5.01 -62.80 -0.31 1.95 16 20 H 0.09 1.51 8.14 -51.92 -0.42 1.08 16 21 N -0.59 -13.23 2.96 -145.20 -0.43 -13.66 16 22 C -0.22 -5.50 10.55 -15.06 -0.16 -5.66 16 23 H 0.08 1.84 7.85 -52.48 -0.41 1.43 16 24 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 25 N -0.91 -24.97 10.74 55.49 0.60 -24.37 16 26 Si 0.91 20.74 29.56 -169.99 -5.03 15.72 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 30 C -0.04 -0.45 9.59 -39.10 -0.38 -0.83 16 31 C 0.01 0.15 6.94 -84.23 -0.58 -0.43 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.15 1.46 6.36 -52.49 -0.33 1.13 16 37 H 0.40 5.94 6.65 -40.82 -0.27 5.67 16 38 H 0.06 1.00 7.88 -51.93 -0.41 0.60 16 39 H 0.06 1.21 8.00 -51.93 -0.42 0.79 16 40 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.05 0.77 7.85 -51.93 -0.41 0.37 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 45 H 0.14 1.54 7.63 -52.49 -0.40 1.14 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -31.59 369.52 -8.25 -39.85 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -5.84 Total: 6.98 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -3.89 Total: -2.95 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.84 Total: -55.40 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.08 Total: -9.77 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.59 -8.25 -39.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098289257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.686 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds