Wall clock time and date at job start Wed Apr 1 2020 01:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.28811 * 125.94174 * 2 1 4 4 N 1.28643 * 111.79127 * 180.02562 * 3 2 1 5 5 C 1.34745 * 109.29478 * 0.02562 * 4 3 2 6 6 C 1.39909 * 134.59430 * 179.97438 * 5 4 3 7 7 C 1.36165 * 119.97883 * 179.73726 * 6 5 4 8 8 C 1.40254 * 120.55173 * 0.52535 * 7 6 5 9 9 C 1.47725 * 119.87912 * 179.75637 * 8 7 6 10 10 O 1.21567 * 119.99953 * 179.72516 * 9 8 7 11 11 N 1.34778 * 119.99758 * 359.71818 * 9 8 7 12 12 C 1.46497 * 120.00145 * 180.02562 * 11 9 8 13 13 H 1.08999 * 110.68308 * 32.01113 * 12 11 9 14 14 C 1.55476 * 110.76000 * 268.95946 * 12 11 9 15 15 C 1.55846 * 103.32799 * 241.51487 * 14 12 11 16 16 H 1.09004 * 116.13003 * 159.23349 * 15 14 12 17 17 C 1.56865 * 105.77333 * 288.56113 * 15 14 12 18 18 C 1.54847 * 103.35377 * 71.45641 * 17 15 14 19 19 C 1.55841 * 110.62970 * 154.99914 * 12 11 9 20 20 H 1.09008 * 115.55988 * 319.68133 * 19 12 11 21 21 N 1.50236 * 101.05204 * 85.55266 * 19 12 11 22 22 C 1.36939 * 130.84325 * 233.93710 * 21 19 12 23 23 H 1.08005 * 119.99349 * 10.13685 * 22 21 19 24 24 C 1.38804 * 120.00247 * 190.14544 * 22 21 19 25 25 N 1.31621 * 119.99998 * 9.07525 * 24 22 21 26 26 Si 1.86800 * 120.00024 * 189.07868 * 24 22 21 27 27 H 1.48501 * 109.47290 * 84.98723 * 26 24 22 28 28 H 1.48503 * 109.47352 * 204.98676 * 26 24 22 29 29 H 1.48498 * 109.47058 * 324.98384 * 26 24 22 30 30 C 1.39159 * 120.24295 * 359.47362 * 8 7 6 31 31 C 1.37370 * 125.94389 * 180.02562 * 2 1 3 32 32 H 1.08991 * 109.47399 * 269.97543 * 1 2 3 33 33 H 1.09004 * 109.46975 * 29.98198 * 1 2 3 34 34 H 1.09004 * 109.46952 * 149.97072 * 1 2 3 35 35 H 1.08002 * 120.01464 * 0.02562 * 6 5 4 36 36 H 1.07994 * 119.72330 * 180.25017 * 7 6 5 37 37 H 0.97003 * 120.00014 * 0.02562 * 11 9 8 38 38 H 1.09001 * 110.61313 * 123.09594 * 14 12 11 39 39 H 1.09002 * 110.75398 * 359.97438 * 14 12 11 40 40 H 1.08999 * 110.43164 * 313.10349 * 17 15 14 41 41 H 1.09003 * 111.03773 * 190.09392 * 17 15 14 42 42 H 1.08999 * 110.62868 * 241.78217 * 18 17 15 43 43 H 1.09006 * 110.76370 * 118.82916 * 18 17 15 44 44 H 0.97005 * 119.99883 * 180.02562 * 25 24 22 45 45 H 1.08000 * 120.24885 * 180.28176 * 30 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2211 1.0429 0.0000 4 7 3.4685 0.7284 -0.0005 5 6 3.5893 -0.6136 -0.0015 6 6 4.6696 -1.5026 -0.0028 7 6 4.4456 -2.8457 0.0018 8 6 3.1369 -3.3502 -0.0030 9 6 2.9110 -4.8101 -0.0033 10 8 1.7776 -5.2498 -0.0025 11 7 3.9615 -5.6545 -0.0046 12 6 3.7375 -7.1023 -0.0054 13 1 2.8238 -7.3502 -0.5455 14 6 3.6803 -7.6519 1.4478 15 6 4.8760 -8.6501 1.5017 16 1 5.2525 -8.8950 2.4949 17 6 4.4461 -9.8780 0.6253 18 6 4.5004 -9.3229 -0.8192 19 6 4.9594 -7.8465 -0.6231 20 1 5.4059 -7.3727 -1.4975 21 7 5.8526 -7.9798 0.5775 22 6 7.1570 -7.6096 0.7689 23 1 7.6563 -6.9930 0.0361 24 6 7.8376 -8.0271 1.9043 25 7 7.2954 -8.9193 2.7058 26 14 9.5229 -7.3225 2.2951 27 1 9.3657 -6.0432 3.0326 28 1 10.2806 -8.2868 3.1325 29 1 10.2622 -7.0774 1.0307 30 6 2.0505 -2.4806 -0.0017 31 6 2.2714 -1.1121 -0.0005 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5136 34 1 -0.3633 -0.8898 -0.5143 35 1 5.6810 -1.1238 -0.0029 36 1 5.2825 -3.5282 0.0049 37 1 4.8658 -5.3037 -0.0050 38 1 2.7384 -8.1711 1.6250 39 1 3.8190 -6.8479 2.1706 40 1 3.4331 -10.1905 0.8789 41 1 5.1436 -10.7071 0.7445 42 1 3.5143 -9.3601 -1.2822 43 1 5.2254 -9.8742 -1.4181 44 1 7.7708 -9.2108 3.4995 45 1 1.0428 -2.8690 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098289257.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:16 Heat of formation + Delta-G solvation = 112.099064 kcal Electronic energy + Delta-G solvation = -29417.498269 eV Core-core repulsion = 25437.739656 eV Total energy + Delta-G solvation = -3979.758613 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.30164 -41.38736 -40.14060 -38.39204 -35.94417 -35.36890 -34.37632 -31.99986 -31.89982 -30.90627 -30.36405 -29.26944 -28.78838 -26.18133 -25.57003 -24.65064 -22.92503 -22.21280 -21.55447 -21.51224 -20.33293 -19.33840 -18.78247 -18.74310 -17.81403 -17.69771 -17.14309 -16.73747 -16.18495 -15.98540 -15.61155 -15.47190 -15.30773 -14.95648 -14.55109 -14.43779 -14.26883 -13.79676 -13.73596 -13.62380 -13.26445 -13.17070 -12.89178 -12.80539 -12.78141 -12.72414 -12.64891 -12.06035 -11.90404 -11.85224 -11.84839 -11.83278 -11.69007 -11.32662 -11.06182 -10.73939 -10.69445 -10.20854 -9.93058 -9.45532 -8.79631 -7.75928 -5.11575 -0.80536 0.05550 0.96306 1.14421 1.53005 1.53842 1.60592 1.81635 2.17157 2.54407 2.64177 2.83896 3.40427 3.43299 3.48639 3.54903 3.61199 3.91350 3.95176 4.02504 4.10626 4.21425 4.26447 4.32004 4.41895 4.49672 4.53528 4.56999 4.67326 4.70765 4.80631 4.84101 4.86128 4.95707 5.08514 5.12085 5.14352 5.20238 5.24207 5.39090 5.42790 5.47800 5.56978 5.62836 5.74867 5.93084 6.25996 6.60401 7.07470 7.12925 7.19799 7.76345 8.64060 9.34854 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013774 B = 0.003043 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.344214 B = 9197.736702 C =10733.957541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.303 5.303 3 N -0.028 5.028 4 N -0.290 5.290 5 C 0.012 3.988 6 C -0.057 4.057 7 C -0.082 4.082 8 C -0.108 4.108 9 C 0.560 3.440 10 O -0.573 6.573 11 N -0.694 5.694 12 C 0.142 3.858 13 H 0.094 0.906 14 C -0.133 4.133 15 C 0.146 3.854 16 H 0.100 0.900 17 C -0.128 4.128 18 C -0.120 4.120 19 C 0.126 3.874 20 H 0.104 0.896 21 N -0.609 5.609 22 C -0.214 4.214 23 H 0.087 0.913 24 C -0.065 4.065 25 N -0.945 5.945 26 Si 0.968 3.032 27 H -0.289 1.289 28 H -0.306 1.306 29 H -0.270 1.270 30 C -0.026 4.026 31 C 0.003 3.997 32 H 0.109 0.891 33 H 0.123 0.877 34 H 0.119 0.881 35 H 0.163 0.837 36 H 0.157 0.843 37 H 0.409 0.591 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.032 0.968 42 H 0.083 0.917 43 H 0.054 0.946 44 H 0.244 0.756 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 12.810 -7.662 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.105 5.105 3 N -0.009 5.009 4 N -0.164 5.164 5 C -0.114 4.114 6 C -0.079 4.079 7 C -0.103 4.103 8 C -0.115 4.115 9 C 0.348 3.652 10 O -0.455 6.455 11 N -0.343 5.343 12 C 0.036 3.964 13 H 0.112 0.888 14 C -0.174 4.174 15 C 0.039 3.961 16 H 0.118 0.882 17 C -0.167 4.167 18 C -0.160 4.160 19 C 0.019 3.981 20 H 0.122 0.878 21 N -0.330 5.330 22 C -0.343 4.343 23 H 0.105 0.895 24 C -0.258 4.258 25 N -0.594 5.594 26 Si 0.798 3.202 27 H -0.216 1.216 28 H -0.233 1.233 29 H -0.195 1.195 30 C -0.049 4.049 31 C -0.116 4.116 32 H 0.127 0.873 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.246 0.754 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.125 14.053 -7.530 21.300 hybrid contribution 1.351 -0.901 0.739 1.784 sum -12.774 13.151 -6.791 19.552 Atomic orbital electron populations 1.22806 0.68993 1.08044 1.06945 1.47552 1.10385 1.01974 1.50577 1.77895 0.97006 1.13130 1.12902 1.75317 1.08324 1.12098 1.20638 1.20439 0.94388 0.91150 1.05458 1.20148 0.98273 0.90762 0.98728 1.21099 0.96137 0.95465 0.97613 1.19738 0.94221 0.92303 1.05279 1.18239 0.84648 0.86247 0.76078 1.90727 1.23410 1.79031 1.52305 1.45868 1.09349 1.06672 1.72447 1.22555 0.98971 0.78535 0.96352 0.88847 1.23402 0.98704 0.99121 0.96135 1.23466 0.86410 0.90231 0.95974 0.88213 1.23068 0.99265 0.98110 0.96306 1.22816 1.00778 0.96116 0.96262 1.23373 0.89293 0.94820 0.90657 0.87845 1.46732 1.07848 1.68959 1.09495 1.19329 0.86814 1.23538 1.04625 0.89485 1.25438 1.01343 0.99634 0.99369 1.69891 1.39263 1.34219 1.16041 0.85240 0.80276 0.76944 0.77730 1.21588 1.23328 1.19498 1.20090 1.00720 0.87255 0.96797 1.19678 0.91083 0.91173 1.09688 0.87254 0.85882 0.86279 0.81931 0.82529 0.75438 0.91128 0.94000 0.91270 0.94887 0.89900 0.92689 0.94691 0.82589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.52 11.40 127.77 1.46 1.98 16 2 N -0.30 -5.76 3.80 -361.27 -1.37 -7.13 16 3 N -0.03 -0.69 13.07 37.02 0.48 -0.21 16 4 N -0.29 -8.02 12.42 -52.39 -0.65 -8.67 16 5 C 0.01 0.31 7.36 39.75 0.29 0.60 16 6 C -0.06 -1.22 10.03 22.19 0.22 -1.00 16 7 C -0.08 -1.73 9.46 22.28 0.21 -1.51 16 8 C -0.11 -2.60 5.88 -20.06 -0.12 -2.72 16 9 C 0.56 16.19 7.77 86.75 0.67 16.87 16 10 O -0.57 -19.48 15.97 -3.93 -0.06 -19.55 16 11 N -0.69 -20.28 5.04 -436.87 -2.20 -22.48 16 12 C 0.14 4.58 2.84 46.83 0.13 4.72 16 13 H 0.09 2.91 7.26 -2.39 -0.02 2.89 16 14 C -0.13 -4.93 6.28 32.43 0.20 -4.72 16 15 C 0.15 6.35 4.64 46.60 0.22 6.56 16 16 H 0.10 5.22 5.88 -2.38 -0.01 5.21 16 17 C -0.13 -4.83 6.50 32.58 0.21 -4.62 16 18 C -0.12 -3.90 6.46 32.21 0.21 -3.70 16 19 C 0.13 4.32 5.01 46.23 0.23 4.55 16 20 H 0.10 3.24 8.14 -2.38 -0.02 3.22 16 21 N -0.61 -26.96 2.96 -613.31 -1.81 -28.77 16 22 C -0.21 -10.61 10.55 84.03 0.89 -9.72 16 23 H 0.09 4.04 7.85 -2.91 -0.02 4.01 16 24 C -0.06 -3.40 5.47 84.86 0.46 -2.94 16 25 N -0.94 -53.42 10.74 21.65 0.23 -53.19 16 26 Si 0.97 43.18 29.56 68.60 2.03 45.21 16 27 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 28 H -0.31 -14.24 7.11 99.48 0.71 -13.54 16 29 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 30 C -0.03 -0.56 9.59 22.58 0.22 -0.35 16 31 C 0.00 0.07 6.94 39.02 0.27 0.34 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.12 0.46 8.14 -2.38 -0.02 0.44 16 35 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.16 2.86 6.36 -2.91 -0.02 2.85 16 37 H 0.41 11.23 6.65 -92.71 -0.62 10.62 16 38 H 0.07 2.38 7.88 -2.39 -0.02 2.37 16 39 H 0.04 1.67 8.00 -2.39 -0.02 1.65 16 40 H 0.07 2.25 7.88 -2.39 -0.02 2.23 16 41 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.08 2.20 7.85 -2.39 -0.02 2.18 16 43 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.24 13.69 8.31 -92.70 -0.77 12.92 16 45 H 0.16 2.96 7.63 -2.91 -0.02 2.94 16 Total: -1.00 -69.17 369.52 2.84 -66.32 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.42 Total: 24.12 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 5.78 Total: 4.35 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -5.33 Total: -120.45 kcal Atomic # 8 Polarization: -19.48 SS G_CDS: -0.06 Total: -19.55 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -69.17 2.84 -66.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098289257.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.423 kcal (2) G-P(sol) polarization free energy of solvation -69.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds