Wall clock time and date at job start Wed Apr 1 2020 01:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40256 * 126.66689 * 2 1 4 4 N 1.28656 * 109.42553 * 180.02562 * 3 2 1 5 5 C 1.35402 * 110.10376 * 359.97438 * 4 3 2 6 6 C 1.40120 * 133.02192 * 179.97438 * 5 4 3 7 7 C 1.37598 * 120.14658 * 180.02562 * 6 5 4 8 8 C 1.38478 * 120.80317 * 359.97438 * 7 6 5 9 9 C 1.39219 * 120.27723 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.24336 * 180.02562 * 9 8 7 11 11 O 1.21600 * 119.99496 * 136.11077 * 10 9 8 12 12 N 1.34770 * 120.00545 * 316.11251 * 10 9 8 13 13 C 1.46505 * 120.00362 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.55526 * 32.09969 * 13 12 10 15 15 C 1.54852 * 110.62613 * 269.02423 * 13 12 10 16 16 C 1.55842 * 103.44412 * 241.50658 * 15 13 12 17 17 H 1.09000 * 115.55308 * 158.81166 * 16 15 13 18 18 C 1.55839 * 105.06674 * 288.17751 * 16 15 13 19 19 C 1.56678 * 103.60312 * 71.59294 * 18 16 15 20 20 C 1.55843 * 110.62646 * 154.99816 * 13 12 10 21 21 H 1.09001 * 115.56237 * 319.68000 * 20 13 12 22 22 N 1.50234 * 101.04994 * 32.94323 * 16 15 13 23 23 C 1.36938 * 130.84232 * 126.01147 * 22 16 15 24 24 H 1.07998 * 120.00232 * 180.02562 * 23 22 16 25 25 C 1.38813 * 119.99752 * 0.02562 * 23 22 16 26 26 N 1.31620 * 120.00294 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99989 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46703 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46837 * 120.00342 * 27 25 23 30 30 H 1.48502 * 109.47125 * 240.00347 * 27 25 23 31 31 C 1.36980 * 126.66374 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46916 * 263.79925 * 1 2 3 33 33 H 1.09002 * 109.47222 * 23.79514 * 1 2 3 34 34 H 1.09001 * 109.47220 * 143.80056 * 1 2 3 35 35 H 1.07995 * 119.92239 * 359.97438 * 6 5 4 36 36 H 1.08007 * 119.59791 * 179.97438 * 7 6 5 37 37 H 1.08004 * 119.86544 * 180.02562 * 8 7 6 38 38 H 0.97000 * 119.99833 * 0.02562 * 12 10 9 39 39 H 1.08995 * 110.62432 * 0.02562 * 15 13 12 40 40 H 1.09000 * 110.62491 * 123.01763 * 15 13 12 41 41 H 1.09002 * 110.62745 * 190.32192 * 18 16 15 42 42 H 1.09002 * 110.62495 * 313.17872 * 18 16 15 43 43 H 1.08995 * 111.44105 * 241.93884 * 19 18 16 44 44 H 1.09001 * 110.62010 * 118.35420 * 19 18 16 45 45 H 0.96999 * 120.00390 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3026 1.1250 0.0000 4 7 3.5313 0.7437 -0.0005 5 6 3.5989 -0.6086 -0.0004 6 6 4.6698 -1.5123 -0.0012 7 6 4.4305 -2.8673 -0.0013 8 6 3.1359 -3.3588 0.0000 9 6 2.0530 -2.4840 0.0009 10 6 0.6741 -3.0084 0.0028 11 8 -0.1630 -2.5148 0.7337 12 7 0.3422 -4.0346 -0.8053 13 6 -1.0273 -4.5551 -0.8037 14 1 -1.7398 -3.7569 -0.5951 15 6 -1.1731 -5.7038 0.2244 16 6 -1.5693 -6.9284 -0.6544 17 1 -1.3783 -7.9061 -0.2119 18 6 -3.0371 -6.6507 -1.0981 19 6 -2.8944 -5.4842 -2.1344 20 6 -1.3551 -5.2420 -2.1636 21 1 -0.9756 -4.7345 -3.0505 22 7 -0.8229 -6.6262 -1.9227 23 6 0.0684 -7.3800 -2.6386 24 1 0.5082 -6.9833 -3.5417 25 6 0.4067 -8.6540 -2.2034 26 7 -0.1296 -9.1377 -1.1031 27 14 1.6220 -9.6827 -3.1804 28 1 2.0764 -8.9163 -4.3683 29 1 2.7917 -10.0107 -2.3263 30 1 0.9644 -10.9385 -3.6227 31 6 2.2829 -1.0988 -0.0005 32 1 -0.3633 -0.1110 1.0217 33 1 -0.3634 0.9403 -0.4146 34 1 -0.3634 -0.8293 -0.6069 35 1 5.6851 -1.1444 -0.0026 36 1 5.2626 -3.5559 -0.0023 37 1 2.9656 -4.4254 0.0004 38 1 1.0101 -4.4287 -1.3880 39 1 -0.2267 -5.8860 0.7333 40 1 -1.9596 -5.4773 0.9442 41 1 -3.4699 -7.5339 -1.5679 42 1 -3.6418 -6.3341 -0.2482 43 1 -3.4178 -4.5884 -1.8005 44 1 -3.2527 -5.7962 -3.1154 45 1 0.1064 -10.0281 -0.7992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098530405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:19 Heat of formation + Delta-G solvation = 128.319024 kcal Electronic energy + Delta-G solvation = -30167.732862 eV Core-core repulsion = 26188.677599 eV Total energy + Delta-G solvation = -3979.055263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.25046 -39.96273 -38.62211 -37.37114 -34.64425 -33.94477 -32.62813 -31.12638 -30.42603 -29.18278 -28.88535 -27.91944 -27.37558 -24.66419 -24.24240 -22.84315 -22.64417 -21.09135 -20.01687 -19.78928 -18.83077 -18.11847 -17.47712 -17.09277 -16.57702 -16.26687 -15.86654 -15.59382 -14.95669 -14.88739 -14.35008 -14.14995 -13.89241 -13.64776 -13.52754 -13.11614 -12.90751 -12.58192 -12.33291 -12.16503 -12.13485 -11.95301 -11.87250 -11.34058 -11.21911 -11.20544 -11.01807 -10.98744 -10.77229 -10.63555 -10.44372 -10.16161 -10.02719 -9.88856 -9.38485 -9.28081 -9.07379 -9.06986 -8.67931 -8.41953 -7.05154 -5.84079 -3.23733 0.13422 1.07971 1.88342 1.99513 2.78911 3.29364 3.31001 3.35360 3.38042 3.48164 3.90744 4.31978 4.34469 4.48838 4.63347 4.79007 4.95388 5.01633 5.14349 5.16399 5.26095 5.39080 5.50200 5.52696 5.56485 5.62855 5.72517 5.76328 5.93490 5.97518 5.99350 6.05516 6.07676 6.17673 6.30538 6.32503 6.37756 6.46571 6.48376 6.62370 6.71780 6.84099 6.96368 7.20906 7.38037 7.69112 7.77009 7.83810 8.07172 8.33906 8.97702 9.61018 10.41173 11.24828 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003621 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.971653 B = 7730.854832 C = 9246.623201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.382 5.382 3 N -0.012 5.012 4 N -0.221 5.221 5 C -0.027 4.027 6 C -0.017 4.017 7 C -0.138 4.138 8 C -0.030 4.030 9 C -0.130 4.130 10 C 0.554 3.446 11 O -0.548 6.548 12 N -0.692 5.692 13 C 0.127 3.873 14 H 0.081 0.919 15 C -0.142 4.142 16 C 0.153 3.847 17 H 0.154 0.846 18 C -0.137 4.137 19 C -0.130 4.130 20 C 0.125 3.875 21 H 0.086 0.914 22 N -0.590 5.590 23 C -0.217 4.217 24 H 0.079 0.921 25 C -0.008 4.008 26 N -0.918 5.918 27 Si 0.914 3.086 28 H -0.280 1.280 29 H -0.290 1.290 30 H -0.291 1.291 31 C 0.126 3.874 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.406 0.594 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.057 0.943 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.176 12.013 1.601 12.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.175 5.175 3 N 0.008 4.992 4 N -0.099 5.099 5 C -0.152 4.152 6 C -0.039 4.039 7 C -0.160 4.160 8 C -0.052 4.052 9 C -0.138 4.138 10 C 0.339 3.661 11 O -0.427 6.427 12 N -0.340 5.340 13 C 0.021 3.979 14 H 0.099 0.901 15 C -0.183 4.183 16 C 0.047 3.953 17 H 0.171 0.829 18 C -0.177 4.177 19 C -0.170 4.170 20 C 0.016 3.984 21 H 0.104 0.896 22 N -0.311 5.311 23 C -0.344 4.344 24 H 0.097 0.903 25 C -0.204 4.204 26 N -0.566 5.566 27 Si 0.745 3.255 28 H -0.206 1.206 29 H -0.217 1.217 30 H -0.218 1.218 31 C 0.002 3.998 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.159 0.841 36 H 0.163 0.837 37 H 0.166 0.834 38 H 0.241 0.759 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.682 13.638 2.022 14.046 hybrid contribution 0.622 -1.771 -0.719 2.010 sum 3.304 11.867 1.303 12.387 Atomic orbital electron populations 1.22206 0.71789 1.04244 1.05236 1.50062 1.08313 1.03064 1.56086 1.81613 0.94043 1.07779 1.15793 1.74833 1.11482 1.10260 1.13336 1.19887 0.92983 0.90273 1.12026 1.20597 0.97517 0.91391 0.94392 1.20968 0.97152 0.94725 1.03115 1.21497 0.91209 1.00110 0.92418 1.18977 0.95012 0.89317 1.10485 1.18035 0.86815 0.80422 0.80784 1.90760 1.50838 1.60149 1.40992 1.46041 1.13844 1.32906 1.41233 1.22737 0.81172 0.95225 0.98799 0.90087 1.23459 1.00726 0.96948 0.97144 1.23771 0.86976 0.98393 0.86169 0.82914 1.23362 0.99901 0.97165 0.97238 1.23195 0.96561 0.97801 0.99414 1.23139 0.93251 0.88226 0.93743 0.89572 1.46539 1.48252 1.10871 1.25429 1.19041 1.15615 0.95547 1.04230 0.90328 1.24697 1.00616 0.97220 0.97854 1.69461 1.46364 1.17407 1.23340 0.86013 0.80358 0.80264 0.78904 1.20569 1.21747 1.21782 1.18974 0.90998 0.89202 1.00602 0.89036 0.89249 0.88798 0.84061 0.83743 0.83411 0.75901 0.92148 0.92713 0.92572 0.93344 0.92824 0.92371 0.93510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.23 9.73 59.85 0.58 1.82 16 2 N -0.38 -5.41 4.10 -65.27 -0.27 -5.68 16 3 N -0.01 -0.18 13.72 60.35 0.83 0.65 16 4 N -0.22 -3.28 12.40 32.15 0.40 -2.88 16 5 C -0.03 -0.37 7.26 -84.76 -0.62 -0.99 16 6 C -0.02 -0.17 10.09 -39.11 -0.39 -0.57 16 7 C -0.14 -1.29 9.98 -39.73 -0.40 -1.69 16 8 C -0.03 -0.34 9.39 -39.13 -0.37 -0.71 16 9 C -0.13 -1.78 5.73 -104.93 -0.60 -2.39 16 10 C 0.55 8.48 6.43 -12.48 -0.08 8.40 16 11 O -0.55 -9.42 13.32 5.28 0.07 -9.35 16 12 N -0.69 -10.66 5.01 -52.43 -0.26 -10.92 16 13 C 0.13 2.12 2.80 -65.43 -0.18 1.94 16 14 H 0.08 1.34 7.21 -51.93 -0.37 0.96 16 15 C -0.14 -2.67 6.23 -24.24 -0.15 -2.82 16 16 C 0.15 3.26 4.72 -62.81 -0.30 2.96 16 17 H 0.15 3.78 5.52 -51.93 -0.29 3.49 16 18 C -0.14 -2.54 6.49 -23.23 -0.15 -2.69 16 19 C -0.13 -2.18 6.58 -23.22 -0.15 -2.33 16 20 C 0.13 2.24 5.01 -62.80 -0.31 1.92 16 21 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 22 N -0.59 -12.99 2.99 -145.82 -0.44 -13.43 16 23 C -0.22 -5.31 10.59 -15.06 -0.16 -5.47 16 24 H 0.08 1.87 7.83 -52.49 -0.41 1.46 16 25 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 26 N -0.92 -24.44 10.47 55.49 0.58 -23.86 16 27 Si 0.91 20.36 29.55 -169.99 -5.02 15.33 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 29 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 30 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 31 C 0.13 1.81 6.81 -83.92 -0.57 1.24 16 32 H 0.09 1.09 7.73 -51.93 -0.40 0.69 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.15 6.17 -51.93 -0.32 0.83 16 35 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 36 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.15 1.56 8.05 -52.48 -0.42 1.14 16 38 H 0.41 6.11 8.34 -40.82 -0.34 5.77 16 39 H 0.06 1.22 7.98 -51.93 -0.41 0.81 16 40 H 0.05 0.96 7.82 -51.93 -0.41 0.56 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 43 H 0.05 0.78 7.81 -51.93 -0.41 0.38 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -29.37 365.49 -8.41 -37.79 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.86 Total: 8.51 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.95 Total: -1.67 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.84 Total: -56.12 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: 0.07 Total: -9.35 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.37 -8.41 -37.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098530405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.107 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds