Wall clock time and date at job start Wed Apr 1 2020 01:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40256 * 126.66689 * 2 1 4 4 N 1.28656 * 109.42553 * 180.02562 * 3 2 1 5 5 C 1.35402 * 110.10376 * 359.97438 * 4 3 2 6 6 C 1.40120 * 133.02192 * 179.97438 * 5 4 3 7 7 C 1.37598 * 120.14658 * 180.02562 * 6 5 4 8 8 C 1.38478 * 120.80317 * 359.97438 * 7 6 5 9 9 C 1.39219 * 120.27723 * 0.02562 * 8 7 6 10 10 C 1.47524 * 120.24336 * 180.02562 * 9 8 7 11 11 O 1.21600 * 119.99496 * 136.11077 * 10 9 8 12 12 N 1.34770 * 120.00545 * 316.11251 * 10 9 8 13 13 C 1.46505 * 120.00362 * 180.02562 * 12 10 9 14 14 H 1.09001 * 110.55526 * 32.09969 * 13 12 10 15 15 C 1.54852 * 110.62613 * 269.02423 * 13 12 10 16 16 C 1.55842 * 103.44412 * 241.50658 * 15 13 12 17 17 H 1.09000 * 115.55308 * 158.81166 * 16 15 13 18 18 C 1.55839 * 105.06674 * 288.17751 * 16 15 13 19 19 C 1.56678 * 103.60312 * 71.59294 * 18 16 15 20 20 C 1.55843 * 110.62646 * 154.99816 * 13 12 10 21 21 H 1.09001 * 115.56237 * 319.68000 * 20 13 12 22 22 N 1.50234 * 101.04994 * 32.94323 * 16 15 13 23 23 C 1.36938 * 130.84232 * 126.01147 * 22 16 15 24 24 H 1.07998 * 120.00232 * 180.02562 * 23 22 16 25 25 C 1.38813 * 119.99752 * 0.02562 * 23 22 16 26 26 N 1.31620 * 120.00294 * 0.02562 * 25 23 22 27 27 Si 1.86805 * 119.99989 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.46703 * 0.02562 * 27 25 23 29 29 H 1.48497 * 109.46837 * 120.00342 * 27 25 23 30 30 H 1.48502 * 109.47125 * 240.00347 * 27 25 23 31 31 C 1.36980 * 126.66374 * 180.02562 * 2 1 3 32 32 H 1.09002 * 109.46916 * 263.79925 * 1 2 3 33 33 H 1.09002 * 109.47222 * 23.79514 * 1 2 3 34 34 H 1.09001 * 109.47220 * 143.80056 * 1 2 3 35 35 H 1.07995 * 119.92239 * 359.97438 * 6 5 4 36 36 H 1.08007 * 119.59791 * 179.97438 * 7 6 5 37 37 H 1.08004 * 119.86544 * 180.02562 * 8 7 6 38 38 H 0.97000 * 119.99833 * 0.02562 * 12 10 9 39 39 H 1.08995 * 110.62432 * 0.02562 * 15 13 12 40 40 H 1.09000 * 110.62491 * 123.01763 * 15 13 12 41 41 H 1.09002 * 110.62745 * 190.32192 * 18 16 15 42 42 H 1.09002 * 110.62495 * 313.17872 * 18 16 15 43 43 H 1.08995 * 111.44105 * 241.93884 * 19 18 16 44 44 H 1.09001 * 110.62010 * 118.35420 * 19 18 16 45 45 H 0.96999 * 120.00390 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3026 1.1250 0.0000 4 7 3.5313 0.7437 -0.0005 5 6 3.5989 -0.6086 -0.0004 6 6 4.6698 -1.5123 -0.0012 7 6 4.4305 -2.8673 -0.0013 8 6 3.1359 -3.3588 0.0000 9 6 2.0530 -2.4840 0.0009 10 6 0.6741 -3.0084 0.0028 11 8 -0.1630 -2.5148 0.7337 12 7 0.3422 -4.0346 -0.8053 13 6 -1.0273 -4.5551 -0.8037 14 1 -1.7398 -3.7569 -0.5951 15 6 -1.1731 -5.7038 0.2244 16 6 -1.5693 -6.9284 -0.6544 17 1 -1.3783 -7.9061 -0.2119 18 6 -3.0371 -6.6507 -1.0981 19 6 -2.8944 -5.4842 -2.1344 20 6 -1.3551 -5.2420 -2.1636 21 1 -0.9756 -4.7345 -3.0505 22 7 -0.8229 -6.6262 -1.9227 23 6 0.0684 -7.3800 -2.6386 24 1 0.5082 -6.9833 -3.5417 25 6 0.4067 -8.6540 -2.2034 26 7 -0.1296 -9.1377 -1.1031 27 14 1.6220 -9.6827 -3.1804 28 1 2.0764 -8.9163 -4.3683 29 1 2.7917 -10.0107 -2.3263 30 1 0.9644 -10.9385 -3.6227 31 6 2.2829 -1.0988 -0.0005 32 1 -0.3633 -0.1110 1.0217 33 1 -0.3634 0.9403 -0.4146 34 1 -0.3634 -0.8293 -0.6069 35 1 5.6851 -1.1444 -0.0026 36 1 5.2626 -3.5559 -0.0023 37 1 2.9656 -4.4254 0.0004 38 1 1.0101 -4.4287 -1.3880 39 1 -0.2267 -5.8860 0.7333 40 1 -1.9596 -5.4773 0.9442 41 1 -3.4699 -7.5339 -1.5679 42 1 -3.6418 -6.3341 -0.2482 43 1 -3.4178 -4.5884 -1.8005 44 1 -3.2527 -5.7962 -3.1154 45 1 0.1064 -10.0281 -0.7992 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098530405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:18 Heat of formation + Delta-G solvation = 110.212063 kcal Electronic energy + Delta-G solvation = -30168.518039 eV Core-core repulsion = 26188.677599 eV Total energy + Delta-G solvation = -3979.840440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.24823 -41.29831 -39.96760 -38.33954 -35.68357 -35.26838 -34.38557 -32.12238 -31.37435 -30.91796 -30.32962 -29.27220 -28.41744 -26.13969 -25.54545 -23.93104 -23.66538 -22.37326 -21.51019 -21.06350 -20.30021 -19.16008 -18.82892 -18.48644 -17.66726 -17.31479 -17.10548 -16.73277 -16.58350 -15.92400 -15.76915 -15.54797 -15.08654 -15.02784 -14.51533 -14.46564 -13.97476 -13.68520 -13.64865 -13.50688 -13.19568 -13.10679 -12.91888 -12.88135 -12.81616 -12.73498 -12.58031 -12.26252 -12.07042 -11.92888 -11.85224 -11.73696 -11.65497 -11.23962 -10.95708 -10.92842 -10.70395 -10.05083 -9.99088 -9.38816 -8.84114 -7.72723 -5.12509 -0.81768 0.13965 0.86211 1.03595 1.51629 1.54268 1.61968 1.66515 2.14447 2.52438 2.53616 2.95697 3.40540 3.42098 3.47495 3.51078 3.67686 3.81707 4.02646 4.08848 4.11142 4.24690 4.27935 4.30142 4.46354 4.50474 4.54858 4.61741 4.64537 4.69864 4.73838 4.81982 4.85053 4.93301 5.07661 5.15016 5.18693 5.21069 5.22594 5.39616 5.42512 5.53075 5.58993 5.61309 5.71508 5.92443 6.30569 6.54060 6.80421 7.09258 7.13228 7.76151 8.61300 9.34524 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013330 B = 0.003621 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.971653 B = 7730.854832 C = 9246.623201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.387 5.387 3 N -0.031 5.031 4 N -0.234 5.234 5 C -0.044 4.044 6 C -0.007 4.007 7 C -0.126 4.126 8 C -0.020 4.020 9 C -0.153 4.153 10 C 0.558 3.442 11 O -0.569 6.569 12 N -0.691 5.691 13 C 0.140 3.860 14 H 0.092 0.908 15 C -0.132 4.132 16 C 0.139 3.861 17 H 0.116 0.884 18 C -0.132 4.132 19 C -0.121 4.121 20 C 0.127 3.873 21 H 0.099 0.901 22 N -0.609 5.609 23 C -0.212 4.212 24 H 0.085 0.915 25 C -0.063 4.063 26 N -0.946 5.946 27 Si 0.970 3.030 28 H -0.267 1.267 29 H -0.295 1.295 30 H -0.304 1.304 31 C 0.108 3.892 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.173 0.827 36 H 0.184 0.816 37 H 0.155 0.845 38 H 0.408 0.592 39 H 0.038 0.962 40 H 0.066 0.934 41 H 0.035 0.965 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.057 0.943 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 13.158 0.885 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.181 5.181 3 N -0.011 5.011 4 N -0.112 5.112 5 C -0.169 4.169 6 C -0.029 4.029 7 C -0.147 4.147 8 C -0.042 4.042 9 C -0.161 4.161 10 C 0.346 3.654 11 O -0.450 6.450 12 N -0.339 5.339 13 C 0.034 3.966 14 H 0.110 0.890 15 C -0.172 4.172 16 C 0.033 3.967 17 H 0.133 0.867 18 C -0.171 4.171 19 C -0.160 4.160 20 C 0.019 3.981 21 H 0.117 0.883 22 N -0.331 5.331 23 C -0.340 4.340 24 H 0.103 0.897 25 C -0.255 4.255 26 N -0.596 5.596 27 Si 0.800 3.200 28 H -0.191 1.191 29 H -0.223 1.223 30 H -0.232 1.232 31 C -0.016 4.016 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.105 0.895 35 H 0.190 0.810 36 H 0.201 0.799 37 H 0.173 0.827 38 H 0.243 0.757 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.076 0.924 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 3.747 14.832 1.290 15.353 hybrid contribution 0.313 -2.133 -0.474 2.207 sum 4.060 12.700 0.817 13.358 Atomic orbital electron populations 1.22268 0.70917 1.05256 1.04922 1.50244 1.08913 1.02962 1.55937 1.81546 0.94327 1.08254 1.16987 1.74775 1.11623 1.11111 1.13657 1.20350 0.93756 0.90154 1.12609 1.21057 0.98158 0.91245 0.92453 1.21374 0.97247 0.94936 1.01141 1.21755 0.91617 1.00178 0.90697 1.18879 0.94589 0.89399 1.13194 1.18243 0.87393 0.79822 0.79990 1.90743 1.51764 1.60727 1.41764 1.45953 1.13357 1.33076 1.41471 1.22511 0.82272 0.94590 0.97216 0.88976 1.23307 0.99905 0.96726 0.97293 1.23592 0.88815 0.97722 0.86571 0.86682 1.23264 0.98119 0.97319 0.98431 1.23158 0.95831 0.98133 0.98905 1.23328 0.93817 0.86243 0.94688 0.88300 1.46710 1.48228 1.12487 1.25636 1.19355 1.15049 0.95580 1.04049 0.89733 1.25354 1.02687 0.98566 0.98942 1.69711 1.47957 1.17109 1.24862 0.85122 0.78333 0.78449 0.78081 1.19112 1.22277 1.23160 1.19240 0.91593 0.89495 1.01230 0.89591 0.86854 0.89479 0.80950 0.79910 0.82733 0.75665 0.94301 0.91541 0.94557 0.91169 0.89698 0.92383 0.94559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.42 9.73 127.77 1.24 3.67 16 2 N -0.39 -10.77 4.10 -360.43 -1.48 -12.25 16 3 N -0.03 -0.93 13.72 37.02 0.51 -0.42 16 4 N -0.23 -6.75 12.40 -52.19 -0.65 -7.40 16 5 C -0.04 -1.13 7.26 39.58 0.29 -0.84 16 6 C -0.01 -0.13 10.09 22.58 0.23 0.10 16 7 C -0.13 -1.89 9.98 22.18 0.22 -1.67 16 8 C -0.02 -0.41 9.39 22.56 0.21 -0.20 16 9 C -0.15 -4.00 5.73 -20.06 -0.11 -4.11 16 10 C 0.56 16.54 6.43 86.69 0.56 17.10 16 11 O -0.57 -19.14 13.32 -4.03 -0.05 -19.20 16 12 N -0.69 -20.38 5.01 -438.07 -2.20 -22.58 16 13 C 0.14 4.47 2.80 46.61 0.13 4.60 16 14 H 0.09 2.80 7.21 -2.39 -0.02 2.78 16 15 C -0.13 -4.87 6.23 32.21 0.20 -4.67 16 16 C 0.14 5.96 4.72 46.23 0.22 6.17 16 17 H 0.12 5.92 5.52 -2.39 -0.01 5.90 16 18 C -0.13 -4.76 6.49 32.86 0.21 -4.55 16 19 C -0.12 -3.75 6.58 32.87 0.22 -3.53 16 20 C 0.13 4.28 5.01 46.23 0.23 4.51 16 21 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 22 N -0.61 -26.53 2.99 -615.26 -1.84 -28.37 16 23 C -0.21 -10.30 10.59 84.03 0.89 -9.41 16 24 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 25 C -0.06 -3.22 5.50 84.86 0.47 -2.75 16 26 N -0.95 -51.91 10.47 21.65 0.23 -51.68 16 27 Si 0.97 42.11 29.55 68.60 2.03 44.14 16 28 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 29 H -0.30 -12.92 7.11 99.48 0.71 -12.21 16 30 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 31 C 0.11 3.02 6.81 39.40 0.27 3.29 16 32 H 0.09 2.03 7.73 -2.39 -0.02 2.01 16 33 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.09 2.09 6.17 -2.39 -0.01 2.08 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.18 1.38 8.06 -2.91 -0.02 1.36 16 37 H 0.16 2.92 8.05 -2.91 -0.02 2.90 16 38 H 0.41 11.74 8.34 -92.71 -0.77 10.97 16 39 H 0.04 1.58 7.98 -2.39 -0.02 1.56 16 40 H 0.07 2.26 7.82 -2.39 -0.02 2.24 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 2.19 7.82 -2.39 -0.02 2.18 16 43 H 0.08 2.15 7.81 -2.39 -0.02 2.13 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.24 13.29 8.31 -92.71 -0.77 12.52 16 Total: -1.00 -65.05 365.49 2.28 -62.77 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.27 Total: 27.27 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.47 Total: 7.71 kcal Atomic # 7 Polarization: -117.26 SS G_CDS: -5.43 Total: -122.69 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.14 kcal Total: -65.05 2.28 -62.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098530405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.981 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds