Wall clock time and date at job start Wed Apr 1 2020 00:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47322 * 2 1 4 4 C 1.50707 * 109.47350 * 239.99876 * 2 1 3 5 5 N 1.34777 * 119.99572 * 60.00360 * 4 2 1 6 6 O 1.21271 * 120.00119 * 239.99723 * 4 2 1 7 7 N 1.46900 * 109.47386 * 119.99809 * 2 1 3 8 8 C 1.48733 * 111.00117 * 300.49034 * 7 2 1 9 9 C 1.54422 * 104.33127 * 199.09998 * 8 7 2 10 10 H 1.09003 * 112.49069 * 262.62801 * 9 8 7 11 11 C 1.54280 * 108.74966 * 136.71213 * 9 8 7 12 12 N 1.48103 * 104.75525 * 224.55417 * 11 9 8 13 13 C 1.34767 * 127.84795 * 219.87728 * 12 11 9 14 14 O 1.21288 * 119.99918 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00244 * 359.97438 * 13 12 11 16 16 S 1.81002 * 109.47121 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99475 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00247 * 359.97438 * 17 16 15 19 19 C 1.38807 * 119.99497 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99592 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00125 * 359.97438 * 19 17 16 22 22 H 1.48511 * 109.46961 * 89.99973 * 21 19 17 23 23 H 1.48497 * 109.47082 * 209.99852 * 21 19 17 24 24 H 1.48497 * 109.46925 * 330.00157 * 21 19 17 25 25 C 1.48102 * 104.30160 * 39.87612 * 12 11 9 26 26 C 1.54281 * 104.75495 * 320.12621 * 25 12 11 27 27 C 1.53004 * 112.96726 * 261.07192 * 26 25 12 28 28 C 1.48731 * 111.00232 * 185.95668 * 7 2 1 29 29 H 1.09007 * 109.47183 * 185.59566 * 1 2 3 30 30 H 1.08994 * 109.47178 * 305.59268 * 1 2 3 31 31 H 1.09004 * 109.47458 * 65.59591 * 1 2 3 32 32 H 0.97004 * 120.00248 * 359.97438 * 5 4 2 33 33 H 0.96996 * 119.99710 * 180.02562 * 5 4 2 34 34 H 1.09005 * 110.45770 * 80.38909 * 8 7 2 35 35 H 1.08999 * 110.46192 * 317.81543 * 8 7 2 36 36 H 1.08994 * 110.38209 * 343.37057 * 11 9 8 37 37 H 1.08995 * 110.38262 * 105.73864 * 11 9 8 38 38 H 1.09000 * 109.46525 * 300.00158 * 15 13 12 39 39 H 1.09000 * 109.47067 * 60.00125 * 15 13 12 40 40 H 0.97003 * 119.99642 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.37747 * 201.30770 * 25 12 11 42 42 H 1.08998 * 110.37712 * 78.94859 * 25 12 11 43 43 H 1.09002 * 109.47200 * 178.41317 * 27 26 25 44 44 H 1.08997 * 109.47608 * 298.41881 * 27 26 25 45 45 H 1.08998 * 109.46855 * 58.42101 * 27 26 25 46 46 H 1.08998 * 110.46183 * 42.18787 * 28 7 2 47 47 H 1.09002 * 110.57418 * 279.66179 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7068 -0.2499 -2.4546 6 8 2.7296 -1.6964 -1.1192 7 7 2.0196 -0.6924 1.1994 8 6 1.5331 -0.0249 2.4363 9 6 2.4882 -0.5253 3.5417 10 1 2.0731 -1.3615 4.1044 11 6 2.8787 0.6685 4.4376 12 7 4.3405 0.5319 4.6321 13 6 5.0486 0.7480 5.7582 14 8 6.2514 0.5922 5.7575 15 6 4.3461 1.1845 7.0180 16 16 5.5597 1.3906 8.3451 17 6 4.4953 1.8879 9.6583 18 1 3.4329 1.9791 9.4872 19 6 5.0225 2.1625 10.9126 20 7 4.2275 2.5344 11.8935 21 14 6.8601 2.0040 11.2086 22 1 7.5216 3.3021 10.9204 23 1 7.1028 1.6285 12.6247 24 1 7.4166 0.9559 10.3160 25 6 4.8473 0.1038 3.3080 26 6 3.7965 -0.9006 2.7910 27 6 4.2047 -2.3585 3.0120 28 6 3.4994 -0.5887 1.3080 29 1 -0.3634 -1.0228 0.1002 30 1 -0.3633 0.5981 0.8356 31 1 -0.3634 0.4246 -0.9359 32 1 1.1488 0.5386 -2.5436 33 1 2.0298 -0.7074 -3.2465 34 1 0.5081 -0.3255 2.6535 35 1 1.6004 1.0584 2.3363 36 1 2.6486 1.6094 3.9378 37 1 2.3613 0.6098 5.3951 38 1 3.8376 2.1322 6.8407 39 1 3.6158 0.4288 7.3072 40 1 4.5959 2.7266 12.7700 41 1 5.8177 -0.3817 3.4118 42 1 4.9194 0.9581 2.6349 43 1 3.4128 -3.0159 2.6532 44 1 5.1245 -2.5653 2.4649 45 1 4.3676 -2.5329 4.0756 46 1 3.8302 0.4190 1.0568 47 1 3.9831 -1.3201 0.6606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101135096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:56 Heat of formation + Delta-G solvation = -55.259118 kcal Electronic energy + Delta-G solvation = -27947.194036 eV Core-core repulsion = 24063.329428 eV Total energy + Delta-G solvation = -3883.864608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.16719 -39.85587 -38.47476 -36.16504 -34.35795 -33.26125 -32.43840 -31.57322 -30.20114 -29.40775 -26.58586 -26.38005 -25.61349 -24.94683 -23.55371 -21.69218 -20.46173 -19.33114 -19.19217 -17.93054 -17.59617 -17.27529 -16.79250 -16.17735 -15.81574 -15.40122 -15.22591 -15.11149 -14.94562 -14.53787 -14.16109 -13.86877 -13.78107 -13.56455 -13.07860 -12.96578 -12.84382 -12.79974 -12.64990 -12.43759 -12.29619 -12.11732 -11.80614 -11.69458 -11.36752 -11.26901 -11.00908 -10.96933 -10.87687 -10.81725 -10.57590 -10.17238 -10.11291 -9.85391 -9.51053 -9.00268 -8.86954 -8.65990 -8.49445 -6.91977 -6.28925 -4.00604 2.22659 2.66956 2.87265 2.95867 3.19208 3.33531 3.51293 3.56372 3.61188 4.04344 4.14391 4.33480 4.37080 4.43485 4.52954 4.63369 4.70641 4.75846 4.90702 4.94560 4.98747 5.02615 5.10184 5.16709 5.19275 5.31890 5.36873 5.40305 5.53771 5.59518 5.60614 5.65403 5.73477 5.79396 5.90416 5.90677 5.97796 6.00665 6.17997 6.28927 6.30370 6.40616 6.48717 6.88636 7.63614 7.85355 7.94146 8.41367 8.44258 9.17316 10.80225 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029277 B = 0.002205 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.142966 B =12693.924295 C =13216.308502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 H 0.069 0.931 4 C 0.522 3.478 5 N -0.858 5.858 6 O -0.521 6.521 7 N -0.483 5.483 8 C 0.037 3.963 9 C -0.097 4.097 10 H 0.102 0.898 11 C 0.105 3.895 12 N -0.626 5.626 13 C 0.553 3.447 14 O -0.518 6.518 15 C -0.117 4.117 16 S -0.142 6.142 17 C -0.520 4.520 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C 0.114 3.886 26 C -0.071 4.071 27 C -0.124 4.124 28 C 0.041 3.959 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.400 0.600 33 H 0.402 0.598 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.043 0.957 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.680 -4.034 -29.493 31.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 H 0.087 0.913 4 C 0.305 3.695 5 N -0.423 5.423 6 O -0.395 6.395 7 N -0.207 5.207 8 C -0.091 4.091 9 C -0.117 4.117 10 H 0.120 0.880 11 C -0.019 4.019 12 N -0.363 5.363 13 C 0.341 3.659 14 O -0.392 6.392 15 C -0.267 4.267 16 S 0.084 5.916 17 C -0.668 4.668 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.517 5.517 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.009 4.009 26 C -0.073 4.073 27 C -0.181 4.181 28 C -0.087 4.087 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.228 0.772 33 H 0.233 0.767 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.583 -5.365 -28.958 30.676 hybrid contribution -0.783 1.479 -0.071 1.674 sum -9.365 -3.886 -29.029 30.749 Atomic orbital electron populations 1.21823 0.91704 1.03910 1.02678 1.21802 0.97600 0.96350 0.90550 0.91308 1.20439 0.79748 0.84453 0.84826 1.43869 1.56426 1.33964 1.08069 1.90750 1.36725 1.25510 1.86475 1.65642 1.06944 1.48411 0.99694 1.23370 0.99718 0.96762 0.89258 1.22983 0.94837 0.98223 0.95686 0.87959 1.22534 0.81472 0.97267 1.00656 1.48957 1.08093 1.69400 1.09830 1.19959 0.86950 0.76200 0.82747 1.90711 1.14038 1.50621 1.83818 1.23247 1.03404 1.04523 0.95572 1.84807 1.12849 1.89758 1.04157 1.22303 0.96160 1.52762 0.95575 0.89390 1.24712 0.98599 0.93262 0.94753 1.69937 1.35468 1.43988 1.02271 0.86735 0.85176 0.80878 0.79076 1.19215 1.19926 1.15905 1.22431 0.98253 0.96399 0.83856 1.22219 0.94527 0.96538 0.93987 1.21597 1.01486 0.93172 1.01826 1.23461 0.88320 1.00718 0.96186 0.90807 0.91082 0.91715 0.77194 0.76682 0.89373 0.93053 0.91024 0.89594 0.88652 0.88520 0.91945 0.89669 0.91485 0.91538 0.92355 0.92296 0.93836 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.60 8.83 37.15 0.33 -0.27 16 2 C 0.05 0.31 2.27 -68.86 -0.16 0.15 16 3 H 0.07 0.35 7.97 -51.93 -0.41 -0.06 16 4 C 0.52 4.02 7.20 -10.98 -0.08 3.94 16 5 N -0.86 -3.16 8.73 31.22 0.27 -2.89 16 6 O -0.52 -6.34 15.34 5.56 0.09 -6.26 16 7 N -0.48 -4.03 4.95 -223.04 -1.10 -5.14 16 8 C 0.04 0.26 4.89 -2.06 -0.01 0.25 16 9 C -0.10 -0.87 3.77 -87.91 -0.33 -1.20 16 10 H 0.10 0.93 7.95 -51.93 -0.41 0.52 16 11 C 0.10 1.07 6.46 -2.49 -0.02 1.05 16 12 N -0.63 -8.81 3.31 -169.52 -0.56 -9.37 16 13 C 0.55 10.36 7.93 -10.99 -0.09 10.27 16 14 O -0.52 -11.67 16.13 5.55 0.09 -11.58 16 15 C -0.12 -2.32 5.13 36.01 0.18 -2.14 16 16 S -0.14 -3.65 18.55 -107.50 -1.99 -5.65 16 17 C -0.52 -15.03 10.04 30.94 0.31 -14.72 16 18 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 19 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 20 N -0.88 -26.56 13.97 55.49 0.78 -25.79 16 21 Si 0.86 21.92 27.74 -169.99 -4.71 17.20 16 22 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.24 -6.03 6.74 56.52 0.38 -5.64 16 25 C 0.11 1.37 6.24 -2.49 -0.02 1.36 16 26 C -0.07 -0.71 1.07 -151.79 -0.16 -0.87 16 27 C -0.12 -1.30 8.71 37.16 0.32 -0.98 16 28 C 0.04 0.38 4.84 -2.06 -0.01 0.37 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.25 7.19 -51.93 -0.37 -0.12 16 31 H 0.06 0.13 7.41 -51.93 -0.38 -0.25 16 32 H 0.40 0.29 8.18 -40.82 -0.33 -0.04 16 33 H 0.40 1.25 8.93 -40.82 -0.36 0.88 16 34 H 0.09 0.54 7.70 -51.93 -0.40 0.14 16 35 H 0.05 0.32 7.03 -51.93 -0.37 -0.05 16 36 H 0.07 0.63 7.15 -51.93 -0.37 0.26 16 37 H 0.09 0.87 7.29 -51.93 -0.38 0.49 16 38 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 39 H 0.10 1.79 7.95 -51.92 -0.41 1.38 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.08 1.16 7.65 -51.93 -0.40 0.76 16 42 H 0.07 0.73 7.15 -51.93 -0.37 0.36 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.04 0.38 6.94 -51.93 -0.36 0.02 16 47 H 0.10 1.14 6.38 -51.93 -0.33 0.80 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -36.96 382.50 -8.57 -45.53 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -7.36 Total: -1.74 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 0.18 Total: -0.08 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: -0.62 Total: -43.19 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: 0.17 Total: -17.83 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.71 Total: 17.20 kcal Atomic # 16 Polarization: -3.65 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.96 -8.57 -45.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101135096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.734 kcal (2) G-P(sol) polarization free energy of solvation -36.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds