Wall clock time and date at job start Wed Apr 1 2020 00:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47322 * 2 1 4 4 C 1.50707 * 109.47350 * 239.99876 * 2 1 3 5 5 N 1.34777 * 119.99572 * 60.00360 * 4 2 1 6 6 O 1.21271 * 120.00119 * 239.99723 * 4 2 1 7 7 N 1.46900 * 109.47386 * 119.99809 * 2 1 3 8 8 C 1.48733 * 111.00117 * 300.49034 * 7 2 1 9 9 C 1.54422 * 104.33127 * 199.09998 * 8 7 2 10 10 H 1.09003 * 112.49069 * 262.62801 * 9 8 7 11 11 C 1.54280 * 108.74966 * 136.71213 * 9 8 7 12 12 N 1.48103 * 104.75525 * 224.55417 * 11 9 8 13 13 C 1.34767 * 127.84795 * 219.87728 * 12 11 9 14 14 O 1.21288 * 119.99918 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00244 * 359.97438 * 13 12 11 16 16 S 1.81002 * 109.47121 * 180.02562 * 15 13 12 17 17 C 1.76199 * 99.99475 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00247 * 359.97438 * 17 16 15 19 19 C 1.38807 * 119.99497 * 179.97438 * 17 16 15 20 20 N 1.31625 * 119.99592 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00125 * 359.97438 * 19 17 16 22 22 H 1.48511 * 109.46961 * 89.99973 * 21 19 17 23 23 H 1.48497 * 109.47082 * 209.99852 * 21 19 17 24 24 H 1.48497 * 109.46925 * 330.00157 * 21 19 17 25 25 C 1.48102 * 104.30160 * 39.87612 * 12 11 9 26 26 C 1.54281 * 104.75495 * 320.12621 * 25 12 11 27 27 C 1.53004 * 112.96726 * 261.07192 * 26 25 12 28 28 C 1.48731 * 111.00232 * 185.95668 * 7 2 1 29 29 H 1.09007 * 109.47183 * 185.59566 * 1 2 3 30 30 H 1.08994 * 109.47178 * 305.59268 * 1 2 3 31 31 H 1.09004 * 109.47458 * 65.59591 * 1 2 3 32 32 H 0.97004 * 120.00248 * 359.97438 * 5 4 2 33 33 H 0.96996 * 119.99710 * 180.02562 * 5 4 2 34 34 H 1.09005 * 110.45770 * 80.38909 * 8 7 2 35 35 H 1.08999 * 110.46192 * 317.81543 * 8 7 2 36 36 H 1.08994 * 110.38209 * 343.37057 * 11 9 8 37 37 H 1.08995 * 110.38262 * 105.73864 * 11 9 8 38 38 H 1.09000 * 109.46525 * 300.00158 * 15 13 12 39 39 H 1.09000 * 109.47067 * 60.00125 * 15 13 12 40 40 H 0.97003 * 119.99642 * 180.02562 * 20 19 17 41 41 H 1.09002 * 110.37747 * 201.30770 * 25 12 11 42 42 H 1.08998 * 110.37712 * 78.94859 * 25 12 11 43 43 H 1.09002 * 109.47200 * 178.41317 * 27 26 25 44 44 H 1.08997 * 109.47608 * 298.41881 * 27 26 25 45 45 H 1.08998 * 109.46855 * 58.42101 * 27 26 25 46 46 H 1.08998 * 110.46183 * 42.18787 * 28 7 2 47 47 H 1.09002 * 110.57418 * 279.66179 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 1.7068 -0.2499 -2.4546 6 8 2.7296 -1.6964 -1.1192 7 7 2.0196 -0.6924 1.1994 8 6 1.5331 -0.0249 2.4363 9 6 2.4882 -0.5253 3.5417 10 1 2.0731 -1.3615 4.1044 11 6 2.8787 0.6685 4.4376 12 7 4.3405 0.5319 4.6321 13 6 5.0486 0.7480 5.7582 14 8 6.2514 0.5922 5.7575 15 6 4.3461 1.1845 7.0180 16 16 5.5597 1.3906 8.3451 17 6 4.4953 1.8879 9.6583 18 1 3.4329 1.9791 9.4872 19 6 5.0225 2.1625 10.9126 20 7 4.2275 2.5344 11.8935 21 14 6.8601 2.0040 11.2086 22 1 7.5216 3.3021 10.9204 23 1 7.1028 1.6285 12.6247 24 1 7.4166 0.9559 10.3160 25 6 4.8473 0.1038 3.3080 26 6 3.7965 -0.9006 2.7910 27 6 4.2047 -2.3585 3.0120 28 6 3.4994 -0.5887 1.3080 29 1 -0.3634 -1.0228 0.1002 30 1 -0.3633 0.5981 0.8356 31 1 -0.3634 0.4246 -0.9359 32 1 1.1488 0.5386 -2.5436 33 1 2.0298 -0.7074 -3.2465 34 1 0.5081 -0.3255 2.6535 35 1 1.6004 1.0584 2.3363 36 1 2.6486 1.6094 3.9378 37 1 2.3613 0.6098 5.3951 38 1 3.8376 2.1322 6.8407 39 1 3.6158 0.4288 7.3072 40 1 4.5959 2.7266 12.7700 41 1 5.8177 -0.3817 3.4118 42 1 4.9194 0.9581 2.6349 43 1 3.4128 -3.0159 2.6532 44 1 5.1245 -2.5653 2.4649 45 1 4.3676 -2.5329 4.0756 46 1 3.8302 0.4190 1.0568 47 1 3.9831 -1.3201 0.6606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101135096.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:55 Heat of formation + Delta-G solvation = -85.081888 kcal Electronic energy + Delta-G solvation = -27948.487249 eV Core-core repulsion = 24063.329428 eV Total energy + Delta-G solvation = -3885.157821 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.97147 -40.66180 -39.64055 -37.03453 -34.97125 -34.67715 -34.08717 -32.28497 -31.32516 -30.41474 -27.93181 -27.47545 -27.12394 -25.63658 -24.33880 -22.36232 -21.13440 -20.60867 -20.03966 -19.48297 -18.35362 -18.17118 -17.74928 -17.15989 -17.11074 -16.68518 -16.50198 -15.98987 -15.94725 -15.67623 -15.32559 -15.06608 -14.90029 -14.67979 -14.39276 -13.93500 -13.82207 -13.58377 -13.41186 -13.32630 -13.25267 -13.13298 -13.02585 -12.99453 -12.68222 -12.67111 -12.31419 -12.06971 -11.89401 -11.75621 -11.63362 -11.60665 -11.17630 -10.99836 -10.76946 -10.58062 -10.54441 -9.84482 -9.42754 -9.01727 -8.52006 -6.23166 0.94443 1.30562 1.44118 1.48899 1.52081 1.69406 2.00056 2.24505 2.46008 2.67238 2.86134 2.99941 3.26450 3.37553 3.67677 3.78361 3.98157 4.01482 4.08646 4.11403 4.14561 4.19162 4.21278 4.29026 4.39020 4.55313 4.58936 4.66471 4.68715 4.78683 4.79389 4.83520 4.92725 4.95737 5.01079 5.11305 5.16206 5.28660 5.30162 5.36223 5.70594 5.78673 5.88844 6.01523 6.11022 6.37979 6.54162 6.93178 7.02753 7.42195 8.60178 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.029277 B = 0.002205 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.142966 B =12693.924295 C =13216.308502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.049 3.951 3 H 0.089 0.911 4 C 0.515 3.485 5 N -0.839 5.839 6 O -0.575 6.575 7 N -0.499 5.499 8 C 0.044 3.956 9 C -0.093 4.093 10 H 0.100 0.900 11 C 0.099 3.901 12 N -0.619 5.619 13 C 0.553 3.447 14 O -0.566 6.566 15 C -0.100 4.100 16 S -0.178 6.178 17 C -0.526 4.526 18 H 0.064 0.936 19 C 0.046 3.954 20 N -0.915 5.915 21 Si 0.913 3.087 22 H -0.262 1.262 23 H -0.258 1.258 24 H -0.239 1.239 25 C 0.113 3.887 26 C -0.067 4.067 27 C -0.120 4.120 28 C 0.051 3.949 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.417 0.583 33 H 0.406 0.594 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.277 0.723 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.043 0.957 46 H 0.053 0.947 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.191 -3.031 -31.475 33.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.063 4.063 3 H 0.107 0.893 4 C 0.300 3.700 5 N -0.404 5.404 6 O -0.453 6.453 7 N -0.224 5.224 8 C -0.084 4.084 9 C -0.112 4.112 10 H 0.119 0.881 11 C -0.023 4.023 12 N -0.353 5.353 13 C 0.341 3.659 14 O -0.445 6.445 15 C -0.251 4.251 16 S 0.049 5.951 17 C -0.674 4.674 18 H 0.083 0.917 19 C -0.159 4.159 20 N -0.552 5.552 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.183 1.183 24 H -0.163 1.163 25 C -0.010 4.010 26 C -0.069 4.069 27 C -0.177 4.177 28 C -0.077 4.077 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.248 0.752 33 H 0.238 0.762 34 H 0.121 0.879 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.071 0.929 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.179 -4.330 -31.003 32.918 hybrid contribution -0.463 1.148 0.342 1.284 sum -10.642 -3.182 -30.661 32.611 Atomic orbital electron populations 1.21837 0.89907 1.03362 1.04561 1.21911 0.98854 0.96642 0.88877 0.89339 1.20834 0.79091 0.83898 0.86198 1.43728 1.55484 1.34036 1.07146 1.90736 1.39325 1.27966 1.87303 1.65588 1.06009 1.49765 1.01011 1.23376 0.99657 0.97636 0.87685 1.22955 0.94604 0.97703 0.95986 0.88134 1.22883 0.78716 0.99078 1.01609 1.48899 1.09941 1.67303 1.09149 1.19648 0.86368 0.76366 0.83472 1.90691 1.15892 1.53207 1.84661 1.23185 1.01838 1.06013 0.94063 1.84768 1.15017 1.89742 1.05577 1.22421 0.95605 1.52467 0.96906 0.91745 1.25535 1.02665 0.93048 0.94668 1.70008 1.37331 1.44980 1.02930 0.85891 0.80223 0.80868 0.79541 1.18653 1.18255 1.16311 1.22600 0.97928 0.97486 0.82945 1.22136 0.94474 0.95327 0.94934 1.21541 1.01481 0.93966 1.00711 1.23253 0.89360 1.00470 0.94634 0.92427 0.89865 0.89351 0.75191 0.76226 0.87918 0.91228 0.88353 0.89178 0.86928 0.87109 0.91343 0.91787 0.89586 0.91444 0.92602 0.93744 0.92898 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.66 8.83 71.98 0.64 -0.03 16 2 C 0.05 0.47 2.27 44.17 0.10 0.57 16 3 H 0.09 0.52 7.97 -2.39 -0.02 0.50 16 4 C 0.52 7.05 7.20 87.66 0.63 7.68 16 5 N -0.84 -4.25 8.73 -173.53 -1.52 -5.76 16 6 O -0.57 -13.87 15.34 -3.00 -0.05 -13.91 16 7 N -0.50 -7.15 4.95 -859.58 -4.26 -11.41 16 8 C 0.04 0.46 4.89 86.43 0.42 0.89 16 9 C -0.09 -1.43 3.77 -9.04 -0.03 -1.46 16 10 H 0.10 1.63 7.95 -2.39 -0.02 1.61 16 11 C 0.10 1.74 6.46 86.51 0.56 2.29 16 12 N -0.62 -16.46 3.31 -808.62 -2.68 -19.14 16 13 C 0.55 20.37 7.93 87.66 0.70 21.07 16 14 O -0.57 -25.74 16.13 -3.06 -0.05 -25.79 16 15 C -0.10 -3.89 5.13 71.24 0.37 -3.53 16 16 S -0.18 -9.14 18.55 -56.49 -1.05 -10.19 16 17 C -0.53 -30.70 10.04 67.96 0.68 -30.02 16 18 H 0.06 3.93 8.03 -2.91 -0.02 3.91 16 19 C 0.05 2.73 5.50 84.86 0.47 3.20 16 20 N -0.91 -55.56 13.97 21.65 0.30 -55.25 16 21 Si 0.91 45.33 27.74 68.60 1.90 47.23 16 22 H -0.26 -12.67 7.11 99.48 0.71 -11.97 16 23 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.24 -11.95 6.74 99.48 0.67 -11.28 16 25 C 0.11 2.59 6.24 86.51 0.54 3.13 16 26 C -0.07 -1.26 1.07 -50.42 -0.05 -1.31 16 27 C -0.12 -2.53 8.71 71.98 0.63 -1.91 16 28 C 0.05 0.87 4.84 86.43 0.42 1.29 16 29 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 30 H 0.08 0.23 7.19 -2.39 -0.02 0.21 16 31 H 0.09 0.00 7.41 -2.38 -0.02 -0.02 16 32 H 0.42 -0.76 8.18 -92.71 -0.76 -1.51 16 33 H 0.41 1.80 8.93 -92.71 -0.83 0.97 16 34 H 0.10 0.85 7.70 -2.38 -0.02 0.83 16 35 H 0.07 0.51 7.03 -2.39 -0.02 0.49 16 36 H 0.10 1.29 7.15 -2.39 -0.02 1.27 16 37 H 0.09 1.55 7.29 -2.39 -0.02 1.53 16 38 H 0.11 3.98 8.14 -2.40 -0.02 3.97 16 39 H 0.11 3.98 7.95 -2.39 -0.02 3.97 16 40 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 41 H 0.06 1.76 7.65 -2.39 -0.02 1.74 16 42 H 0.09 1.68 7.15 -2.39 -0.02 1.66 16 43 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.05 0.79 6.94 -2.39 -0.02 0.78 16 47 H 0.08 1.77 6.38 -2.39 -0.02 1.75 16 Total: -1.00 -82.45 382.50 -1.96 -84.41 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: -0.62 Total: 7.96 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.06 Total: 1.86 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -8.15 Total: -91.56 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -0.10 Total: -39.70 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.23 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.05 Total: -10.19 kcal Total: -82.45 -1.96 -84.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101135096.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.675 kcal (2) G-P(sol) polarization free energy of solvation -82.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds