Wall clock time and date at job start Wed Apr 1 2020 00:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47882 * 2 1 4 4 C 1.50701 * 109.47087 * 120.00623 * 2 1 3 5 5 N 1.34785 * 119.99743 * 273.32364 * 4 2 1 6 6 O 1.21280 * 120.00633 * 93.32077 * 4 2 1 7 7 N 1.46902 * 109.47133 * 239.99989 * 2 1 3 8 8 C 1.48733 * 111.00104 * 173.91165 * 7 2 1 9 9 C 1.54426 * 104.33120 * 199.10318 * 8 7 2 10 10 H 1.08998 * 112.97123 * 262.35461 * 9 8 7 11 11 C 1.54279 * 108.75062 * 136.71380 * 9 8 7 12 12 N 1.48094 * 104.76048 * 272.55770 * 11 9 8 13 13 C 1.34771 * 127.84928 * 140.12456 * 12 11 9 14 14 O 1.21279 * 120.00224 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99785 * 0.03007 * 13 12 11 16 16 S 1.81001 * 109.46836 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00012 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00077 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00218 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00025 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47073 * 59.99309 * 21 19 17 23 23 H 1.48497 * 109.47646 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46979 * 299.99598 * 21 19 17 25 25 C 1.48099 * 104.30312 * 320.12835 * 12 11 9 26 26 C 1.54283 * 104.75776 * 39.87039 * 25 12 11 27 27 C 1.53000 * 112.97195 * 213.08346 * 26 25 12 28 28 C 1.48735 * 111.00050 * 59.38068 * 7 2 1 29 29 H 1.08997 * 109.46754 * 300.00000 * 1 2 3 30 30 H 1.09002 * 109.46775 * 59.99923 * 1 2 3 31 31 H 1.09001 * 109.47086 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99630 * 0.02562 * 5 4 2 33 33 H 0.96993 * 120.00098 * 179.72029 * 5 4 2 34 34 H 1.09006 * 110.46529 * 317.81690 * 8 7 2 35 35 H 1.09002 * 110.46273 * 80.39033 * 8 7 2 36 36 H 1.08999 * 110.38152 * 31.38039 * 11 9 8 37 37 H 1.09009 * 110.37720 * 153.74347 * 11 9 8 38 38 H 1.08997 * 109.46987 * 299.99599 * 15 13 12 39 39 H 1.08989 * 109.47372 * 60.00168 * 15 13 12 40 40 H 0.97002 * 120.00190 * 179.97438 * 20 19 17 41 41 H 1.08995 * 110.38120 * 281.05147 * 25 12 11 42 42 H 1.08997 * 110.37857 * 158.68808 * 25 12 11 43 43 H 1.09006 * 109.46676 * 297.42226 * 27 26 25 44 44 H 1.08998 * 109.46647 * 57.41273 * 27 26 25 45 45 H 1.08990 * 109.47703 * 177.41902 * 27 26 25 46 46 H 1.09001 * 110.46246 * 279.61100 * 28 7 2 47 47 H 1.09001 * 110.46320 * 42.18223 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.1931 -0.0304 2.3829 6 8 2.2918 -1.8943 1.1837 7 7 2.0197 -0.6925 -1.1995 8 6 3.4991 -0.5861 -1.3097 9 6 3.7953 -0.8985 -2.7928 10 1 4.0933 -1.9338 -2.9581 11 6 4.8435 0.1075 -3.3117 12 7 4.0528 1.2697 -3.7777 13 6 4.3415 2.5781 -3.6324 14 8 3.5861 3.4184 -4.0731 15 6 5.6030 2.9970 -2.9223 16 16 5.7057 4.8039 -2.8905 17 6 7.2285 5.0086 -2.0281 18 1 7.7836 4.1425 -1.6994 19 6 7.7141 6.2830 -1.7702 20 7 7.0374 7.3387 -2.1703 21 14 9.3289 6.5001 -0.8565 22 1 10.4219 5.8474 -1.6211 23 1 9.6241 7.9480 -0.7098 24 1 9.2247 5.8771 0.4876 25 6 2.8727 0.6676 -4.4396 26 6 2.4854 -0.5263 -3.5424 27 6 1.9039 -1.7016 -4.3306 28 6 1.5305 -0.0268 -2.4363 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9852 0.9163 2.4204 33 1 2.5126 -0.4886 3.1759 34 1 3.8284 0.4225 -1.0596 35 1 3.9830 -1.3174 -0.6623 36 1 5.5160 0.4041 -2.5068 37 1 5.4071 -0.3243 -4.1389 38 1 5.5890 2.6155 -1.9014 39 1 6.4676 2.5936 -3.4492 40 1 7.3766 8.2293 -1.9898 41 1 3.1337 0.3219 -5.4398 42 1 2.0556 1.3875 -4.4870 43 1 0.9810 -1.3899 -4.8198 44 1 2.6227 -2.0252 -5.0834 45 1 1.6938 -2.5269 -3.6504 46 1 0.5059 -0.3294 -2.6522 47 1 1.5959 1.0567 -2.3372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101135097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:58 Heat of formation + Delta-G solvation = -58.638950 kcal Electronic energy + Delta-G solvation = -28578.470783 eV Core-core repulsion = 24694.459614 eV Total energy + Delta-G solvation = -3884.011169 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11652 -39.69081 -38.32777 -36.01418 -33.96467 -33.19602 -32.47153 -31.82357 -29.87608 -29.38402 -26.76584 -26.06726 -25.46552 -25.02510 -23.33899 -21.53236 -20.24109 -19.47076 -19.10959 -17.67913 -17.61064 -17.24025 -16.55050 -16.03471 -15.68641 -15.36394 -15.13379 -14.84161 -14.72168 -14.38404 -14.20282 -13.91165 -13.80084 -13.39952 -13.13987 -12.92571 -12.84221 -12.66212 -12.55558 -12.25780 -12.08354 -11.98430 -11.76669 -11.61758 -11.43129 -11.08897 -11.07390 -10.98384 -10.82914 -10.78756 -10.71007 -10.00161 -9.91106 -9.86504 -9.45729 -9.10028 -8.78449 -8.57445 -8.28963 -6.55338 -6.25628 -3.96880 2.40881 2.85045 2.99167 3.10765 3.20147 3.22849 3.26043 3.56497 3.72274 4.08805 4.16951 4.25217 4.45532 4.57561 4.75492 4.82969 4.89018 4.95922 4.97984 5.01973 5.09492 5.17811 5.23824 5.36056 5.41585 5.43250 5.48100 5.50151 5.54496 5.64048 5.66990 5.70365 5.76732 5.81882 5.84812 5.91012 5.96339 6.01526 6.08066 6.36747 6.47964 6.49982 6.64559 7.10067 7.55124 7.67940 8.05379 8.30850 8.50435 9.19547 10.81705 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.003244 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.923413 B = 8629.251022 C =10024.873423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.050 3.950 3 H 0.065 0.935 4 C 0.524 3.476 5 N -0.858 5.858 6 O -0.524 6.524 7 N -0.480 5.480 8 C 0.034 3.966 9 C -0.095 4.095 10 H 0.104 0.896 11 C 0.104 3.896 12 N -0.628 5.628 13 C 0.554 3.446 14 O -0.516 6.516 15 C -0.146 4.146 16 S -0.059 6.059 17 C -0.537 4.537 18 H 0.072 0.928 19 C 0.075 3.925 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.274 1.274 25 C 0.114 3.886 26 C -0.074 4.074 27 C -0.124 4.124 28 C 0.042 3.958 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.402 0.598 33 H 0.402 0.598 34 H 0.048 0.952 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.631 -18.705 2.849 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 H 0.083 0.917 4 C 0.307 3.693 5 N -0.422 5.422 6 O -0.398 6.398 7 N -0.204 5.204 8 C -0.094 4.094 9 C -0.115 4.115 10 H 0.122 0.878 11 C -0.020 4.020 12 N -0.365 5.365 13 C 0.343 3.657 14 O -0.390 6.390 15 C -0.297 4.297 16 S 0.168 5.832 17 C -0.685 4.685 18 H 0.090 0.910 19 C -0.134 4.134 20 N -0.503 5.503 21 Si 0.744 3.256 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.009 4.009 26 C -0.075 4.075 27 C -0.181 4.181 28 C -0.086 4.086 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.230 0.770 33 H 0.233 0.767 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.806 -18.430 2.037 22.535 hybrid contribution 2.325 0.415 1.570 2.836 sum -10.482 -18.015 3.606 21.152 Atomic orbital electron populations 1.21762 0.91540 1.03585 1.02869 1.21800 0.97813 0.96309 0.90349 0.91700 1.20423 0.76855 0.87408 0.84608 1.43923 1.70898 1.14412 1.12993 1.90740 1.49092 1.15328 1.84631 1.65673 1.06398 1.48478 0.99862 1.23333 0.88738 1.00660 0.96623 1.22963 0.94579 0.99796 0.94154 0.87773 1.22421 0.93997 0.85894 0.99698 1.48959 1.24091 1.04706 1.58775 1.19981 0.87205 0.79613 0.78930 1.90711 1.50341 1.49396 1.48556 1.23500 0.96867 1.07248 1.02071 1.85391 1.30359 0.92024 1.75463 1.22813 1.07940 0.95178 1.42554 0.91016 1.24978 0.98030 0.94823 0.95610 1.70002 1.38142 0.98301 1.43811 0.86234 0.82133 0.77359 0.79847 1.19887 1.20762 1.19947 1.22301 0.89454 0.93883 0.95287 1.22234 0.94766 0.95454 0.95084 1.21589 1.00527 0.96598 0.99424 1.23351 0.99181 0.97100 0.88955 0.91642 0.91078 0.90939 0.76968 0.76747 0.93359 0.89487 0.89878 0.90780 0.89603 0.89275 0.92091 0.91123 0.89804 0.92265 0.92246 0.91342 0.89606 0.92947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.01 37.16 0.33 -0.78 16 2 C 0.05 0.49 2.25 -68.86 -0.16 0.34 16 3 H 0.07 0.64 7.97 -51.93 -0.41 0.23 16 4 C 0.52 5.69 6.64 -10.98 -0.07 5.61 16 5 N -0.86 -6.28 8.87 31.22 0.28 -6.01 16 6 O -0.52 -7.74 16.88 5.56 0.09 -7.65 16 7 N -0.48 -5.21 4.89 -223.04 -1.09 -6.30 16 8 C 0.03 0.38 5.20 -2.06 -0.01 0.37 16 9 C -0.10 -0.92 3.77 -87.90 -0.33 -1.25 16 10 H 0.10 0.87 7.95 -51.93 -0.41 0.46 16 11 C 0.10 1.12 6.15 -2.50 -0.02 1.11 16 12 N -0.63 -8.84 3.31 -169.52 -0.56 -9.40 16 13 C 0.55 10.50 7.93 -10.99 -0.09 10.41 16 14 O -0.52 -11.75 16.12 5.56 0.09 -11.66 16 15 C -0.15 -2.97 5.13 36.01 0.18 -2.78 16 16 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 17 C -0.54 -15.12 9.50 30.94 0.29 -14.82 16 18 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 19 C 0.08 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -25.86 13.22 55.49 0.73 -25.12 16 21 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C 0.11 1.32 5.88 -2.49 -0.01 1.30 16 26 C -0.07 -0.69 1.07 -151.79 -0.16 -0.85 16 27 C -0.12 -0.92 8.75 37.16 0.33 -0.59 16 28 C 0.04 0.42 4.38 -2.06 -0.01 0.41 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.53 6.88 -51.93 -0.36 0.18 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 2.03 8.83 -40.82 -0.36 1.67 16 33 H 0.40 2.54 8.93 -40.82 -0.36 2.18 16 34 H 0.05 0.60 7.40 -51.93 -0.38 0.21 16 35 H 0.09 1.04 7.59 -51.93 -0.39 0.65 16 36 H 0.08 0.91 6.92 -51.93 -0.36 0.56 16 37 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.09 1.62 7.95 -51.92 -0.41 1.21 16 39 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.07 0.73 8.00 -51.93 -0.42 0.32 16 42 H 0.08 1.08 7.50 -51.93 -0.39 0.69 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.76 7.35 -51.93 -0.38 0.38 16 47 H 0.05 0.62 7.49 -51.93 -0.39 0.24 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -36.35 389.77 -9.17 -45.53 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.54 Total: 1.93 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: 0.18 Total: 0.49 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.64 Total: -46.83 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: 0.18 Total: -19.31 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.35 -9.17 -45.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101135097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.111 kcal (2) G-P(sol) polarization free energy of solvation -36.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds