Wall clock time and date at job start Wed Apr 1 2020 00:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47882 * 2 1 4 4 C 1.50701 * 109.47087 * 120.00623 * 2 1 3 5 5 N 1.34785 * 119.99743 * 273.32364 * 4 2 1 6 6 O 1.21280 * 120.00633 * 93.32077 * 4 2 1 7 7 N 1.46902 * 109.47133 * 239.99989 * 2 1 3 8 8 C 1.48733 * 111.00104 * 173.91165 * 7 2 1 9 9 C 1.54426 * 104.33120 * 199.10318 * 8 7 2 10 10 H 1.08998 * 112.97123 * 262.35461 * 9 8 7 11 11 C 1.54279 * 108.75062 * 136.71380 * 9 8 7 12 12 N 1.48094 * 104.76048 * 272.55770 * 11 9 8 13 13 C 1.34771 * 127.84928 * 140.12456 * 12 11 9 14 14 O 1.21279 * 120.00224 * 180.02562 * 13 12 11 15 15 C 1.50703 * 119.99785 * 0.03007 * 13 12 11 16 16 S 1.81001 * 109.46836 * 179.97438 * 15 13 12 17 17 C 1.76197 * 100.00012 * 179.97438 * 16 15 13 18 18 H 1.07996 * 120.00077 * 359.97438 * 17 16 15 19 19 C 1.38801 * 120.00218 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00025 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00246 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47073 * 59.99309 * 21 19 17 23 23 H 1.48497 * 109.47646 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.46979 * 299.99598 * 21 19 17 25 25 C 1.48099 * 104.30312 * 320.12835 * 12 11 9 26 26 C 1.54283 * 104.75776 * 39.87039 * 25 12 11 27 27 C 1.53000 * 112.97195 * 213.08346 * 26 25 12 28 28 C 1.48735 * 111.00050 * 59.38068 * 7 2 1 29 29 H 1.08997 * 109.46754 * 300.00000 * 1 2 3 30 30 H 1.09002 * 109.46775 * 59.99923 * 1 2 3 31 31 H 1.09001 * 109.47086 * 179.97438 * 1 2 3 32 32 H 0.97003 * 119.99630 * 0.02562 * 5 4 2 33 33 H 0.96993 * 120.00098 * 179.72029 * 5 4 2 34 34 H 1.09006 * 110.46529 * 317.81690 * 8 7 2 35 35 H 1.09002 * 110.46273 * 80.39033 * 8 7 2 36 36 H 1.08999 * 110.38152 * 31.38039 * 11 9 8 37 37 H 1.09009 * 110.37720 * 153.74347 * 11 9 8 38 38 H 1.08997 * 109.46987 * 299.99599 * 15 13 12 39 39 H 1.08989 * 109.47372 * 60.00168 * 15 13 12 40 40 H 0.97002 * 120.00190 * 179.97438 * 20 19 17 41 41 H 1.08995 * 110.38120 * 281.05147 * 25 12 11 42 42 H 1.08997 * 110.37857 * 158.68808 * 25 12 11 43 43 H 1.09006 * 109.46676 * 297.42226 * 27 26 25 44 44 H 1.08998 * 109.46647 * 57.41273 * 27 26 25 45 45 H 1.08990 * 109.47703 * 177.41902 * 27 26 25 46 46 H 1.09001 * 110.46246 * 279.61100 * 28 7 2 47 47 H 1.09001 * 110.46320 * 42.18223 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 2.1931 -0.0304 2.3829 6 8 2.2918 -1.8943 1.1837 7 7 2.0197 -0.6925 -1.1995 8 6 3.4991 -0.5861 -1.3097 9 6 3.7953 -0.8985 -2.7928 10 1 4.0933 -1.9338 -2.9581 11 6 4.8435 0.1075 -3.3117 12 7 4.0528 1.2697 -3.7777 13 6 4.3415 2.5781 -3.6324 14 8 3.5861 3.4184 -4.0731 15 6 5.6030 2.9970 -2.9223 16 16 5.7057 4.8039 -2.8905 17 6 7.2285 5.0086 -2.0281 18 1 7.7836 4.1425 -1.6994 19 6 7.7141 6.2830 -1.7702 20 7 7.0374 7.3387 -2.1703 21 14 9.3289 6.5001 -0.8565 22 1 10.4219 5.8474 -1.6211 23 1 9.6241 7.9480 -0.7098 24 1 9.2247 5.8771 0.4876 25 6 2.8727 0.6676 -4.4396 26 6 2.4854 -0.5263 -3.5424 27 6 1.9039 -1.7016 -4.3306 28 6 1.5305 -0.0268 -2.4363 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.9852 0.9163 2.4204 33 1 2.5126 -0.4886 3.1759 34 1 3.8284 0.4225 -1.0596 35 1 3.9830 -1.3174 -0.6623 36 1 5.5160 0.4041 -2.5068 37 1 5.4071 -0.3243 -4.1389 38 1 5.5890 2.6155 -1.9014 39 1 6.4676 2.5936 -3.4492 40 1 7.3766 8.2293 -1.9898 41 1 3.1337 0.3219 -5.4398 42 1 2.0556 1.3875 -4.4870 43 1 0.9810 -1.3899 -4.8198 44 1 2.6227 -2.0252 -5.0834 45 1 1.6938 -2.5269 -3.6504 46 1 0.5059 -0.3294 -2.6522 47 1 1.5959 1.0567 -2.3372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101135097.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:57 Heat of formation + Delta-G solvation = -87.528353 kcal Electronic energy + Delta-G solvation = -28579.723522 eV Core-core repulsion = 24694.459614 eV Total energy + Delta-G solvation = -3885.263907 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05252 -40.67755 -39.61566 -37.03070 -34.82276 -34.60969 -34.14293 -32.64897 -31.17917 -30.42775 -27.78720 -27.50971 -26.91125 -25.95738 -24.21388 -22.40975 -21.14111 -20.68438 -20.17852 -19.42171 -18.37963 -18.17447 -17.90569 -17.11804 -16.90286 -16.63406 -16.47845 -16.14672 -15.87874 -15.68554 -15.34069 -15.19897 -14.72835 -14.51750 -14.31872 -13.95284 -13.83550 -13.74619 -13.44289 -13.33451 -13.18905 -13.12091 -12.89381 -12.85858 -12.68950 -12.65582 -12.43336 -12.21599 -11.85439 -11.70098 -11.62159 -11.49253 -11.15115 -10.99137 -10.89396 -10.68583 -10.32203 -9.84137 -9.57318 -8.70565 -8.36661 -6.15664 1.20528 1.42082 1.42740 1.51648 1.53010 1.56067 2.03556 2.25062 2.35408 2.90954 2.97510 3.16006 3.33354 3.42541 3.60458 3.79898 3.87294 4.02668 4.05494 4.06246 4.14497 4.17901 4.21443 4.35373 4.39514 4.46920 4.58064 4.61800 4.67400 4.70538 4.77344 4.78427 4.85409 4.92031 4.99692 5.13106 5.15722 5.21610 5.29750 5.39008 5.50946 5.66965 5.73895 5.90268 6.17182 6.39172 6.40817 7.04407 7.07160 7.29823 8.72292 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011324 B = 0.003244 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.923413 B = 8629.251022 C =10024.873423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.047 3.953 3 H 0.063 0.937 4 C 0.523 3.477 5 N -0.841 5.841 6 O -0.567 6.567 7 N -0.485 5.485 8 C 0.035 3.965 9 C -0.086 4.086 10 H 0.128 0.872 11 C 0.099 3.901 12 N -0.620 5.620 13 C 0.554 3.446 14 O -0.565 6.565 15 C -0.120 4.120 16 S -0.144 6.144 17 C -0.549 4.549 18 H 0.081 0.919 19 C 0.017 3.983 20 N -0.910 5.910 21 Si 0.996 3.004 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.262 1.262 25 C 0.112 3.888 26 C -0.064 4.064 27 C -0.117 4.117 28 C 0.044 3.956 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.415 0.585 33 H 0.409 0.591 34 H 0.030 0.970 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.272 0.728 41 H 0.091 0.909 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 -20.907 3.188 23.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 H 0.081 0.919 4 C 0.307 3.693 5 N -0.406 5.406 6 O -0.445 6.445 7 N -0.209 5.209 8 C -0.093 4.093 9 C -0.105 4.105 10 H 0.146 0.854 11 C -0.024 4.024 12 N -0.354 5.354 13 C 0.342 3.658 14 O -0.444 6.444 15 C -0.271 4.271 16 S 0.083 5.917 17 C -0.696 4.696 18 H 0.099 0.901 19 C -0.188 4.188 20 N -0.546 5.546 21 Si 0.818 3.182 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.011 4.011 26 C -0.065 4.065 27 C -0.175 4.175 28 C -0.084 4.084 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.245 0.755 33 H 0.241 0.759 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.110 0.890 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.087 0.913 46 H 0.118 0.882 47 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -12.147 -20.668 2.400 24.093 hybrid contribution 2.037 1.005 1.482 2.712 sum -10.110 -19.664 3.882 22.449 Atomic orbital electron populations 1.21752 0.90029 1.03446 1.04018 1.21884 0.99044 0.95824 0.89827 0.91937 1.20590 0.76348 0.86924 0.85475 1.43798 1.69416 1.15006 1.12335 1.90717 1.51324 1.17066 1.85399 1.65687 1.06137 1.48709 1.00368 1.23276 0.89072 0.99297 0.97609 1.22986 0.94193 1.00542 0.92816 0.85448 1.22722 0.94197 0.84754 1.00718 1.48854 1.25223 1.03857 1.57494 1.19643 0.86368 0.80973 0.78807 1.90690 1.51583 1.51231 1.50858 1.23284 0.98556 1.01753 1.03485 1.85546 1.31163 0.99045 1.75922 1.23144 1.07982 0.95912 1.42611 0.90116 1.26089 1.02088 0.94286 0.96327 1.70166 1.40288 0.98911 1.45247 0.85035 0.76927 0.77556 0.78688 1.18715 1.20268 1.18628 1.22527 0.87958 0.94050 0.96561 1.22226 0.94515 0.95258 0.94520 1.21563 1.01219 0.95274 0.99410 1.23358 1.00266 0.95688 0.89083 0.89925 0.90592 0.91601 0.75482 0.75941 0.95129 0.90396 0.90053 0.88076 0.88192 0.87745 0.91910 0.89047 0.91464 0.91384 0.90775 0.91346 0.88200 0.95256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 9.01 71.98 0.65 -1.37 16 2 C 0.05 0.90 2.25 44.17 0.10 1.00 16 3 H 0.06 1.23 7.97 -2.39 -0.02 1.21 16 4 C 0.52 11.06 6.64 87.66 0.58 11.64 16 5 N -0.84 -11.50 8.87 -173.52 -1.54 -13.04 16 6 O -0.57 -16.63 16.88 -3.03 -0.05 -16.68 16 7 N -0.48 -10.08 4.89 -859.57 -4.20 -14.28 16 8 C 0.04 0.76 5.20 86.43 0.45 1.21 16 9 C -0.09 -1.44 3.77 -9.03 -0.03 -1.48 16 10 H 0.13 1.66 7.95 -2.39 -0.02 1.64 16 11 C 0.10 1.89 6.15 86.51 0.53 2.42 16 12 N -0.62 -16.75 3.31 -808.64 -2.68 -19.42 16 13 C 0.55 21.13 7.93 87.66 0.70 21.82 16 14 O -0.57 -26.63 16.12 -3.02 -0.05 -26.68 16 15 C -0.12 -4.86 5.13 71.24 0.37 -4.49 16 16 S -0.14 -7.98 20.57 -56.49 -1.16 -9.15 16 17 C -0.55 -31.17 9.50 67.95 0.65 -30.52 16 18 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 19 C 0.02 0.97 5.49 84.86 0.47 1.44 16 20 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 21 Si 1.00 43.05 29.55 68.60 2.03 45.08 16 22 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 C 0.11 2.39 5.88 86.51 0.51 2.90 16 26 C -0.06 -1.05 1.07 -50.42 -0.05 -1.11 16 27 C -0.12 -1.35 8.75 71.98 0.63 -0.72 16 28 C 0.04 0.83 4.38 86.43 0.38 1.21 16 29 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.06 6.88 -2.39 -0.02 1.04 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.41 3.68 8.83 -92.71 -0.82 2.86 16 33 H 0.41 4.74 8.93 -92.71 -0.83 3.91 16 34 H 0.03 0.75 7.40 -2.38 -0.02 0.73 16 35 H 0.08 1.82 7.59 -2.39 -0.02 1.80 16 36 H 0.08 1.63 6.92 -2.39 -0.02 1.61 16 37 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.10 3.74 7.95 -2.40 -0.02 3.72 16 39 H 0.10 3.89 8.14 -2.40 -0.02 3.87 16 40 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.09 1.64 8.00 -2.39 -0.02 1.62 16 42 H 0.07 1.71 7.50 -2.39 -0.02 1.69 16 43 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.10 1.61 7.35 -2.39 -0.02 1.59 16 47 H 0.03 0.70 7.49 -2.39 -0.02 0.68 16 Total: -1.00 -81.76 389.77 -2.11 -83.87 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: -0.65 Total: 21.42 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.91 Total: 3.96 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -8.14 Total: -101.82 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.10 Total: -43.36 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.16 Total: -9.15 kcal Total: -81.76 -2.11 -83.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101135097.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.662 kcal (2) G-P(sol) polarization free energy of solvation -81.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds