Wall clock time and date at job start Wed Apr 1 2020 01:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81396 * 109.47119 * 2 1 4 4 C 1.81398 * 102.99903 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47597 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99530 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00025 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99822 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.85431 * 37.34063 * 9 8 6 11 11 C 1.54623 * 110.97166 * 273.55077 * 9 8 6 12 12 C 1.51286 * 104.19583 * 217.04495 * 11 9 8 13 13 O 1.21283 * 124.94068 * 196.22850 * 12 11 9 14 14 N 1.34417 * 110.11517 * 16.49747 * 12 11 9 15 15 C 1.46497 * 124.35094 * 180.16242 * 14 12 11 16 16 C 1.53949 * 113.74131 * 38.76337 * 15 14 12 17 17 N 1.47809 * 86.03405 * 222.08543 * 16 15 14 18 18 C 1.36944 * 134.45428 * 204.64322 * 17 16 15 19 19 H 1.07995 * 120.00109 * 179.86787 * 18 17 16 20 20 C 1.38809 * 119.99873 * 359.86813 * 18 17 16 21 21 N 1.31620 * 120.00226 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00017 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46756 * 89.99879 * 22 20 18 24 24 H 1.48502 * 109.47125 * 210.00259 * 22 20 18 25 25 H 1.48502 * 109.46712 * 330.00143 * 22 20 18 26 26 C 1.47572 * 91.05547 * 24.54875 * 17 16 15 27 27 C 1.46762 * 111.30037 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.47300 * 300.00347 * 1 2 3 29 29 H 1.09000 * 109.47148 * 59.99906 * 1 2 3 30 30 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47240 * 239.99861 * 2 1 3 32 32 H 1.09005 * 109.46520 * 119.99772 * 2 1 3 33 33 H 1.08996 * 109.47131 * 60.00066 * 4 3 2 34 34 H 1.09004 * 109.46943 * 299.99971 * 4 3 2 35 35 H 1.09005 * 109.47137 * 59.99670 * 5 4 3 36 36 H 1.09005 * 109.47174 * 300.00320 * 5 4 3 37 37 H 0.96998 * 120.00156 * 0.02562 * 8 6 5 38 38 H 1.09000 * 110.48720 * 98.37029 * 11 9 8 39 39 H 1.08997 * 110.48721 * 335.72625 * 11 9 8 40 40 H 1.09000 * 112.94291 * 170.35350 * 15 14 12 41 41 H 1.08997 * 113.76893 * 336.34946 * 16 15 14 42 42 H 1.09000 * 113.76451 * 107.74481 * 16 15 14 43 43 H 0.96999 * 119.99865 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.77356 * 221.15141 * 26 17 16 45 45 H 1.09000 * 113.77234 * 89.75283 * 26 17 16 46 46 H 1.09004 * 110.38933 * 224.25961 * 27 14 12 47 47 H 1.08995 * 110.11843 * 102.33377 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 6 4.6065 2.8815 0.0015 6 6 6.1039 2.7117 0.0015 7 8 6.5880 1.5997 0.0015 8 7 6.9050 3.7955 0.0016 9 6 8.3607 3.6303 0.0022 10 1 8.6552 2.7817 -0.6154 11 6 8.9000 3.4794 1.4435 12 6 10.2179 4.2219 1.4261 13 8 11.0869 4.1144 2.2653 14 7 10.2833 5.0226 0.3484 15 6 11.4255 5.8808 0.0243 16 6 12.7906 5.2345 0.3221 17 7 13.1832 6.5545 0.8589 18 6 14.3769 7.2027 1.0328 19 1 14.3956 8.1949 1.4587 20 6 15.5629 6.5843 0.6615 21 7 15.5402 5.3752 0.1420 22 14 17.1912 7.4688 0.8980 23 1 17.7361 7.1514 2.2425 24 1 18.1520 7.0239 -0.1433 25 1 16.9798 8.9342 0.7829 26 6 11.7729 6.8942 1.1298 27 6 9.0647 4.9243 -0.4635 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.2406 0.9541 -0.8890 34 1 4.2398 0.9544 0.8910 35 1 4.3029 3.4328 0.8915 36 1 4.3038 3.4333 -0.8885 37 1 6.5178 4.6848 0.0020 38 1 9.0577 2.4280 1.6836 39 1 8.2142 3.9360 2.1571 40 1 11.3565 6.3223 -0.9699 41 1 12.7493 4.4483 1.0759 42 1 13.3417 4.9405 -0.5712 43 1 16.3690 4.9430 -0.1171 44 1 11.5129 7.9229 0.8803 45 1 11.4319 6.5966 2.1214 46 1 9.3178 4.8557 -1.5215 47 1 8.4242 5.7879 -0.2846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108511014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:47 Heat of formation + Delta-G solvation = -10.970576 kcal Electronic energy + Delta-G solvation = -26739.412411 eV Core-core repulsion = 22857.468298 eV Total energy + Delta-G solvation = -3881.944113 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.80110 -39.72585 -37.28822 -36.46204 -34.20118 -33.40775 -33.26670 -32.14834 -30.33753 -27.64471 -27.21820 -25.46445 -24.73813 -23.74986 -23.33744 -21.74943 -20.90013 -20.32747 -18.35689 -17.82466 -16.94385 -16.76238 -16.52127 -16.30503 -16.13219 -15.48182 -15.26679 -15.08559 -14.81538 -14.41074 -14.25338 -13.94595 -13.71286 -13.54715 -13.51960 -13.24371 -13.21682 -12.62768 -12.46209 -12.15309 -12.03773 -11.85305 -11.82137 -11.76351 -11.56923 -11.42765 -11.20200 -10.85389 -10.68699 -10.44413 -10.27940 -10.19557 -9.98232 -9.72992 -9.49525 -9.17843 -8.66509 -8.20605 -8.15824 -6.81280 -5.71675 -3.03815 1.09795 2.07685 2.22120 2.68747 2.90988 3.28717 3.43083 3.47945 3.49245 4.14688 4.19861 4.39032 4.40507 4.45295 4.45832 4.51709 4.51963 4.78858 4.86150 4.87343 4.99512 5.17413 5.20688 5.22346 5.26996 5.31151 5.38159 5.38980 5.53229 5.56001 5.60687 5.63851 5.73946 5.82576 6.07375 6.28129 6.51120 6.57113 6.86496 7.04577 7.29528 7.47530 7.59003 7.62593 7.79885 8.01645 8.53517 9.08869 9.75186 10.64040 11.45565 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.051508 B = 0.001595 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.474660 B =17552.891859 C =17676.658110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 S -0.268 6.268 4 C -0.069 4.069 5 C -0.125 4.125 6 C 0.521 3.479 7 O -0.533 6.533 8 N -0.719 5.719 9 C 0.135 3.865 10 H 0.111 0.889 11 C -0.167 4.167 12 C 0.515 3.485 13 O -0.507 6.507 14 N -0.606 5.606 15 C 0.098 3.902 16 C 0.153 3.847 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.919 5.919 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.112 3.888 27 C 0.099 3.901 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.404 0.596 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.071 0.929 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.040 0.960 46 H 0.086 0.914 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.535 -6.886 -4.148 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.235 4.235 3 S -0.042 6.042 4 C -0.218 4.218 5 C -0.166 4.166 6 C 0.306 3.694 7 O -0.409 6.409 8 N -0.372 5.372 9 C 0.029 3.971 10 H 0.129 0.871 11 C -0.208 4.208 12 C 0.301 3.699 13 O -0.381 6.381 14 N -0.341 5.341 15 C -0.004 4.004 16 C 0.027 3.973 17 N -0.331 5.331 18 C -0.349 4.349 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.566 5.566 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C -0.015 4.015 27 C -0.025 4.025 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.240 0.760 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -30.879 -6.741 -3.747 31.828 hybrid contribution 1.405 -0.230 0.196 1.437 sum -29.474 -6.971 -3.551 30.495 Atomic orbital electron populations 1.21522 0.92103 1.02674 1.03258 1.23302 1.00213 0.94812 1.05190 1.86813 1.05575 1.13607 1.98207 1.23061 0.92244 0.99811 1.06675 1.21361 0.91349 0.97921 1.05948 1.20491 0.88813 0.84531 0.75587 1.90753 1.76816 1.24665 1.48696 1.45923 1.05950 1.09449 1.75852 1.21822 0.79408 0.99117 0.96763 0.87067 1.22824 0.96616 1.03443 0.97929 1.20601 0.88065 0.79807 0.81424 1.90797 1.42605 1.64897 1.39792 1.48502 1.17116 1.43691 1.24825 1.24092 0.84567 0.92683 0.99092 1.22785 0.86288 0.89659 0.98588 1.45699 1.00032 1.14959 1.72378 1.18987 0.82094 0.98030 1.35791 0.90192 1.24797 0.97570 0.96572 1.01450 1.69829 1.26053 1.13510 1.47199 0.86106 0.83539 0.78615 0.77410 1.21595 1.21623 1.20612 1.22912 0.86748 0.95911 0.95956 1.22184 0.87143 0.96320 0.96882 0.91614 0.91631 0.90987 0.89939 0.89926 0.89143 0.89132 0.87691 0.87695 0.76030 0.87794 0.87919 0.87606 0.92658 0.91095 0.93638 0.93975 0.94269 0.89572 0.90950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 9.92 37.16 0.37 -0.20 16 2 C -0.09 -0.45 6.66 37.16 0.25 -0.20 16 3 S -0.27 -1.82 21.74 -107.50 -2.34 -4.16 16 4 C -0.07 -0.46 5.23 37.16 0.19 -0.27 16 5 C -0.12 -0.66 5.71 -27.88 -0.16 -0.82 16 6 C 0.52 4.16 7.83 -10.98 -0.09 4.07 16 7 O -0.53 -6.50 15.72 5.56 0.09 -6.41 16 8 N -0.72 -4.63 5.18 -52.22 -0.27 -4.90 16 9 C 0.13 1.24 3.43 -66.30 -0.23 1.01 16 10 H 0.11 1.16 7.72 -51.93 -0.40 0.75 16 11 C -0.17 -1.97 6.59 -26.74 -0.18 -2.14 16 12 C 0.52 8.69 7.42 -10.86 -0.08 8.61 16 13 O -0.51 -11.34 14.61 5.55 0.08 -11.26 16 14 N -0.61 -9.17 3.16 -166.64 -0.53 -9.69 16 15 C 0.10 1.86 4.81 -70.15 -0.34 1.52 16 16 C 0.15 3.83 6.90 -2.84 -0.02 3.81 16 17 N -0.60 -16.32 3.70 -177.91 -0.66 -16.97 16 18 C -0.22 -6.46 10.70 -15.06 -0.16 -6.62 16 19 H 0.08 2.24 7.83 -52.49 -0.41 1.82 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.92 -28.26 11.39 55.49 0.63 -27.63 16 22 Si 0.91 22.75 29.55 -169.99 -5.02 17.72 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.11 2.43 8.43 -2.97 -0.03 2.40 16 27 C 0.10 0.94 7.07 -3.12 -0.02 0.92 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.09 0.67 8.10 -51.92 -0.42 0.25 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.40 1.39 8.37 -40.82 -0.34 1.05 16 38 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.06 1.53 5.75 -51.93 -0.30 1.24 16 42 H 0.07 1.92 7.16 -51.93 -0.37 1.55 16 43 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.90 7.22 -51.93 -0.37 0.53 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.51 7.77 -51.93 -0.40 0.11 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -37.48 396.53 -10.27 -47.75 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.65 Total: -2.20 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.58 Total: 11.77 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.82 Total: -59.20 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.17 Total: -17.67 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.72 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.34 Total: -4.16 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.48 -10.27 -47.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108511014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.777 kcal (2) G-P(sol) polarization free energy of solvation -37.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds