Wall clock time and date at job start Wed Apr 1 2020 01:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81396 * 109.47119 * 2 1 4 4 C 1.81398 * 102.99903 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47419 * 180.02562 * 4 3 2 6 6 C 1.50705 * 109.47597 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99530 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00025 * 179.97438 * 6 5 4 9 9 C 1.46501 * 119.99822 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.85431 * 37.34063 * 9 8 6 11 11 C 1.54623 * 110.97166 * 273.55077 * 9 8 6 12 12 C 1.51286 * 104.19583 * 217.04495 * 11 9 8 13 13 O 1.21283 * 124.94068 * 196.22850 * 12 11 9 14 14 N 1.34417 * 110.11517 * 16.49747 * 12 11 9 15 15 C 1.46497 * 124.35094 * 180.16242 * 14 12 11 16 16 C 1.53949 * 113.74131 * 38.76337 * 15 14 12 17 17 N 1.47809 * 86.03405 * 222.08543 * 16 15 14 18 18 C 1.36944 * 134.45428 * 204.64322 * 17 16 15 19 19 H 1.07995 * 120.00109 * 179.86787 * 18 17 16 20 20 C 1.38809 * 119.99873 * 359.86813 * 18 17 16 21 21 N 1.31620 * 120.00226 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00017 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46756 * 89.99879 * 22 20 18 24 24 H 1.48502 * 109.47125 * 210.00259 * 22 20 18 25 25 H 1.48502 * 109.46712 * 330.00143 * 22 20 18 26 26 C 1.47572 * 91.05547 * 24.54875 * 17 16 15 27 27 C 1.46762 * 111.30037 * 0.02562 * 14 12 11 28 28 H 1.09003 * 109.47300 * 300.00347 * 1 2 3 29 29 H 1.09000 * 109.47148 * 59.99906 * 1 2 3 30 30 H 1.08997 * 109.47208 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47240 * 239.99861 * 2 1 3 32 32 H 1.09005 * 109.46520 * 119.99772 * 2 1 3 33 33 H 1.08996 * 109.47131 * 60.00066 * 4 3 2 34 34 H 1.09004 * 109.46943 * 299.99971 * 4 3 2 35 35 H 1.09005 * 109.47137 * 59.99670 * 5 4 3 36 36 H 1.09005 * 109.47174 * 300.00320 * 5 4 3 37 37 H 0.96998 * 120.00156 * 0.02562 * 8 6 5 38 38 H 1.09000 * 110.48720 * 98.37029 * 11 9 8 39 39 H 1.08997 * 110.48721 * 335.72625 * 11 9 8 40 40 H 1.09000 * 112.94291 * 170.35350 * 15 14 12 41 41 H 1.08997 * 113.76893 * 336.34946 * 16 15 14 42 42 H 1.09000 * 113.76451 * 107.74481 * 16 15 14 43 43 H 0.96999 * 119.99865 * 180.02562 * 21 20 18 44 44 H 1.08996 * 113.77356 * 221.15141 * 26 17 16 45 45 H 1.09000 * 113.77234 * 89.75283 * 26 17 16 46 46 H 1.09004 * 110.38933 * 224.25961 * 27 14 12 47 47 H 1.08995 * 110.11843 * 102.33377 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 6 4.6065 2.8815 0.0015 6 6 6.1039 2.7117 0.0015 7 8 6.5880 1.5997 0.0015 8 7 6.9050 3.7955 0.0016 9 6 8.3607 3.6303 0.0022 10 1 8.6552 2.7817 -0.6154 11 6 8.9000 3.4794 1.4435 12 6 10.2179 4.2219 1.4261 13 8 11.0869 4.1144 2.2653 14 7 10.2833 5.0226 0.3484 15 6 11.4255 5.8808 0.0243 16 6 12.7906 5.2345 0.3221 17 7 13.1832 6.5545 0.8589 18 6 14.3769 7.2027 1.0328 19 1 14.3956 8.1949 1.4587 20 6 15.5629 6.5843 0.6615 21 7 15.5402 5.3752 0.1420 22 14 17.1912 7.4688 0.8980 23 1 17.7361 7.1514 2.2425 24 1 18.1520 7.0239 -0.1433 25 1 16.9798 8.9342 0.7829 26 6 11.7729 6.8942 1.1298 27 6 9.0647 4.9243 -0.4635 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 4.2406 0.9541 -0.8890 34 1 4.2398 0.9544 0.8910 35 1 4.3029 3.4328 0.8915 36 1 4.3038 3.4333 -0.8885 37 1 6.5178 4.6848 0.0020 38 1 9.0577 2.4280 1.6836 39 1 8.2142 3.9360 2.1571 40 1 11.3565 6.3223 -0.9699 41 1 12.7493 4.4483 1.0759 42 1 13.3417 4.9405 -0.5712 43 1 16.3690 4.9430 -0.1171 44 1 11.5129 7.9229 0.8803 45 1 11.4319 6.5966 2.1214 46 1 9.3178 4.8557 -1.5215 47 1 8.4242 5.7879 -0.2846 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108511014.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:46 Heat of formation + Delta-G solvation = -37.904004 kcal Electronic energy + Delta-G solvation = -26740.580332 eV Core-core repulsion = 22857.468298 eV Total energy + Delta-G solvation = -3883.112034 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.91249 -40.64785 -38.95787 -37.67835 -35.26167 -34.23391 -33.85072 -33.63717 -31.58366 -29.19965 -28.49219 -26.62554 -26.09930 -25.17814 -24.11033 -22.60177 -22.14176 -21.40483 -19.79298 -18.79779 -18.45339 -17.90292 -17.45880 -17.09589 -16.94816 -16.80207 -16.50000 -15.89717 -15.76277 -15.65612 -15.42010 -15.02190 -14.90417 -14.70996 -14.47591 -14.27723 -14.03279 -13.70454 -13.56130 -13.42191 -13.30279 -13.02200 -12.83442 -12.78413 -12.57925 -12.48942 -12.29412 -12.24523 -12.17717 -11.99934 -11.92038 -11.52895 -11.12066 -10.94637 -10.92856 -10.67159 -10.11470 -9.58842 -8.95104 -8.66959 -7.93133 -5.27972 0.62597 1.42673 1.46475 1.54987 1.55051 1.60381 1.62975 1.87004 2.22835 2.48389 3.25214 3.32374 3.46286 3.48898 3.69663 3.78869 3.84162 3.97450 4.02761 4.03465 4.05809 4.09556 4.24823 4.50807 4.53166 4.57536 4.60348 4.64272 4.74904 4.76469 4.83175 4.87835 4.89559 4.92057 4.92823 4.93533 5.20108 5.21576 5.24336 5.41393 5.46731 5.83514 5.88415 6.23937 6.53184 6.87329 7.20750 7.24726 7.56913 8.52217 9.24182 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.051508 B = 0.001595 C = 0.001584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.474660 B =17552.891859 C =17676.658110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 S -0.287 6.287 4 C -0.065 4.065 5 C -0.115 4.115 6 C 0.522 3.478 7 O -0.579 6.579 8 N -0.700 5.700 9 C 0.149 3.851 10 H 0.101 0.899 11 C -0.153 4.153 12 C 0.503 3.497 13 O -0.574 6.574 14 N -0.605 5.605 15 C 0.137 3.863 16 C 0.146 3.854 17 N -0.634 5.634 18 C -0.238 4.238 19 H 0.087 0.913 20 C -0.069 4.069 21 N -0.955 5.955 22 Si 0.984 3.016 23 H -0.291 1.291 24 H -0.290 1.290 25 H -0.261 1.261 26 C 0.114 3.886 27 C 0.100 3.900 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.127 0.873 37 H 0.424 0.576 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.019 0.981 42 H 0.041 0.959 43 H 0.248 0.752 44 H 0.072 0.928 45 H 0.023 0.977 46 H 0.108 0.892 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.345 -5.045 -5.280 35.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.234 4.234 3 S -0.060 6.060 4 C -0.214 4.214 5 C -0.156 4.156 6 C 0.309 3.691 7 O -0.459 6.459 8 N -0.354 5.354 9 C 0.042 3.958 10 H 0.119 0.881 11 C -0.195 4.195 12 C 0.291 3.709 13 O -0.453 6.453 14 N -0.338 5.338 15 C 0.033 3.967 16 C 0.019 3.981 17 N -0.361 5.361 18 C -0.366 4.366 19 H 0.105 0.895 20 C -0.262 4.262 21 N -0.604 5.604 22 Si 0.812 3.188 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.185 1.185 26 C -0.012 4.012 27 C -0.022 4.022 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.264 0.736 38 H 0.112 0.888 39 H 0.142 0.858 40 H 0.157 0.843 41 H 0.037 0.963 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.041 0.959 46 H 0.126 0.874 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -33.795 -4.842 -4.910 34.491 hybrid contribution 2.177 -0.865 0.592 2.416 sum -31.618 -5.707 -4.318 32.418 Atomic orbital electron populations 1.21526 0.91271 1.03526 1.02993 1.23388 1.00880 0.93649 1.05497 1.86818 1.05752 1.15264 1.98213 1.22997 0.92176 1.00582 1.05625 1.21363 0.88866 0.97430 1.07891 1.20957 0.89900 0.83917 0.74349 1.90752 1.77710 1.26580 1.50814 1.45696 1.04432 1.10327 1.74969 1.21525 0.80985 0.98868 0.94404 0.88138 1.22745 0.94116 1.02066 1.00529 1.21492 0.88890 0.79747 0.80737 1.90763 1.45261 1.66937 1.42342 1.48456 1.17881 1.42384 1.25104 1.23396 0.83054 0.90731 0.99522 1.22595 0.90359 0.88814 0.96293 1.46136 1.01507 1.15649 1.72818 1.19464 0.83536 0.98549 1.35061 0.89501 1.25734 1.01292 0.97468 1.01679 1.70049 1.26454 1.15240 1.48638 0.84999 0.78684 0.78396 0.76755 1.21847 1.21674 1.18522 1.22997 0.83961 0.98157 0.96096 1.22537 0.84946 0.97725 0.96988 0.91909 0.91817 0.89570 0.89573 0.89715 0.90091 0.90358 0.85812 0.85463 0.73643 0.88841 0.85803 0.84302 0.96303 0.94016 0.94274 0.91037 0.95905 0.87368 0.86901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.92 71.98 0.71 -0.22 16 2 C -0.09 -0.79 6.66 71.98 0.48 -0.32 16 3 S -0.29 -3.46 21.74 -56.49 -1.23 -4.69 16 4 C -0.07 -0.77 5.23 71.98 0.38 -0.40 16 5 C -0.11 -0.87 5.71 29.85 0.17 -0.70 16 6 C 0.52 6.99 7.83 87.66 0.69 7.68 16 7 O -0.58 -13.51 15.72 -3.03 -0.05 -13.55 16 8 N -0.70 -6.34 5.18 -437.52 -2.27 -8.61 16 9 C 0.15 2.31 3.43 46.05 0.16 2.47 16 10 H 0.10 1.89 7.72 -2.38 -0.02 1.88 16 11 C -0.15 -3.43 6.59 30.59 0.20 -3.22 16 12 C 0.50 17.02 7.42 87.90 0.65 17.67 16 13 O -0.57 -27.08 14.61 -3.04 -0.04 -27.12 16 14 N -0.60 -17.25 3.16 -799.71 -2.52 -19.77 16 15 C 0.14 5.00 4.81 46.75 0.22 5.23 16 16 C 0.15 7.59 6.90 86.44 0.60 8.19 16 17 N -0.63 -34.88 3.70 -716.78 -2.65 -37.53 16 18 C -0.24 -14.08 10.70 84.03 0.90 -13.18 16 19 H 0.09 4.85 7.83 -2.91 -0.02 4.83 16 20 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 21 N -0.96 -60.97 11.39 21.65 0.25 -60.72 16 22 Si 0.98 47.50 29.55 68.60 2.03 49.53 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 25 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.11 4.86 8.43 86.49 0.73 5.59 16 27 C 0.10 1.47 7.07 86.84 0.61 2.09 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 33 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 34 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 37 H 0.42 0.68 8.37 -92.71 -0.78 -0.09 16 38 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.12 2.26 8.08 -2.39 -0.02 2.24 16 40 H 0.14 4.25 8.14 -2.39 -0.02 4.23 16 41 H 0.02 1.13 5.75 -2.39 -0.01 1.12 16 42 H 0.04 2.37 7.16 -2.39 -0.02 2.36 16 43 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 44 H 0.07 2.63 8.14 -2.39 -0.02 2.62 16 45 H 0.02 1.07 7.22 -2.39 -0.02 1.05 16 46 H 0.11 1.26 8.14 -2.38 -0.02 1.25 16 47 H 0.11 0.89 7.77 -2.39 -0.02 0.87 16 Total: -1.00 -88.35 396.53 0.67 -87.68 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.19 Total: 7.57 kcal Atomic # 6 Polarization: 20.24 SS G_CDS: 6.97 Total: 27.21 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -7.20 Total: -126.63 kcal Atomic # 8 Polarization: -40.58 SS G_CDS: -0.09 Total: -40.68 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.23 Total: -4.69 kcal Total: -88.35 0.67 -87.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108511014.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.776 kcal (2) G-P(sol) polarization free energy of solvation -88.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds