Wall clock time and date at job start Wed Apr 1 2020 01:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81399 * 109.47272 * 2 1 4 4 C 1.81401 * 102.99839 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47078 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47442 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99517 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00458 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00225 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.85821 * 328.78783 * 9 8 6 11 11 C 1.54626 * 111.00317 * 92.60746 * 9 8 6 12 12 C 1.51285 * 104.25919 * 142.71285 * 11 9 8 13 13 O 1.21288 * 124.94726 * 164.00931 * 12 11 9 14 14 N 1.34414 * 110.11060 * 344.14346 * 12 11 9 15 15 C 1.46510 * 124.34847 * 179.43672 * 14 12 11 16 16 C 1.53946 * 113.84020 * 321.05438 * 15 14 12 17 17 N 1.47580 * 86.11645 * 90.74870 * 16 15 14 18 18 C 1.36940 * 134.49194 * 204.64076 * 17 16 15 19 19 H 1.08004 * 119.99910 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00130 * 0.02562 * 18 17 16 21 21 N 1.31623 * 119.99843 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00040 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47249 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47360 * 120.00281 * 22 20 18 25 25 H 1.48499 * 109.47453 * 240.00193 * 22 20 18 26 26 C 1.47585 * 91.01539 * 24.64210 * 17 16 15 27 27 C 1.46762 * 111.30469 * 359.17060 * 14 12 11 28 28 H 1.09001 * 109.47460 * 300.00507 * 1 2 3 29 29 H 1.09007 * 109.47208 * 60.00107 * 1 2 3 30 30 H 1.08995 * 109.47507 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46972 * 239.99621 * 2 1 3 32 32 H 1.09001 * 109.46763 * 119.99844 * 2 1 3 33 33 H 1.08999 * 109.47109 * 60.00021 * 4 3 2 34 34 H 1.08998 * 109.47122 * 299.99685 * 4 3 2 35 35 H 1.09001 * 109.47112 * 59.99432 * 5 4 3 36 36 H 1.09009 * 109.46887 * 300.00176 * 5 4 3 37 37 H 0.97007 * 119.99620 * 0.02562 * 8 6 5 38 38 H 1.09002 * 110.48593 * 261.60717 * 11 9 8 39 39 H 1.09000 * 110.48638 * 24.25291 * 11 9 8 40 40 H 1.09002 * 112.94617 * 189.36825 * 15 14 12 41 41 H 1.08996 * 113.77105 * 205.05282 * 16 15 14 42 42 H 1.09002 * 113.76556 * 336.45215 * 16 15 14 43 43 H 0.96992 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.76681 * 221.05446 * 26 17 16 45 45 H 1.08994 * 113.76726 * 89.65745 * 26 17 16 46 46 H 1.09000 * 110.24495 * 136.27675 * 27 14 12 47 47 H 1.08993 * 110.24683 * 258.27904 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 6 4.6065 2.8815 0.0015 6 6 6.1039 2.7117 0.0015 7 8 6.5880 1.5996 0.0015 8 7 6.9051 3.7954 0.0016 9 6 8.3607 3.6302 0.0011 10 1 8.6483 2.7208 0.5285 11 6 8.9183 3.6335 -1.4412 12 6 10.2328 4.3741 -1.3308 13 8 11.1101 4.3609 -2.1682 14 7 10.2882 5.0466 -0.1683 15 6 11.4281 5.8597 0.2628 16 6 12.7967 5.2484 -0.0883 17 7 12.7010 6.0098 -1.3488 18 6 13.2395 5.8666 -2.5997 19 1 13.0058 6.5830 -3.3735 20 6 14.0857 4.8008 -2.8733 21 7 14.3701 3.9275 -1.9305 22 14 14.8197 4.6052 -4.5798 23 1 14.3468 5.7103 -5.4518 24 1 16.3014 4.6463 -4.4892 25 1 14.3950 3.3037 -5.1552 26 6 11.7919 6.9875 -0.7198 27 6 9.0576 4.8668 0.6109 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 4.2406 0.9540 -0.8890 34 1 4.2398 0.9544 0.8910 35 1 4.3029 3.4328 0.8915 36 1 4.3038 3.4333 -0.8885 37 1 6.5178 4.6848 0.0020 38 1 9.0800 2.6135 -1.7899 39 1 8.2411 4.1637 -2.1108 40 1 11.3475 6.1892 1.2987 41 1 13.6055 5.5780 0.5638 42 1 12.7728 4.1672 -0.2252 43 1 14.9611 3.1826 -2.1217 44 1 10.9658 7.2950 -1.3610 45 1 12.3055 7.8280 -0.2532 46 1 9.2976 4.6859 1.6587 47 1 8.4191 5.7449 0.5156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108511015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:49 Heat of formation + Delta-G solvation = 8.701351 kcal Electronic energy + Delta-G solvation = -27437.151969 eV Core-core repulsion = 23556.060895 eV Total energy + Delta-G solvation = -3881.091074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.54375 -39.52477 -37.11979 -35.92971 -33.93494 -33.30493 -33.20744 -31.85551 -29.97667 -27.37001 -27.05883 -25.35628 -24.69785 -23.65789 -23.20249 -21.52037 -20.76699 -20.26357 -17.83221 -17.65108 -16.75133 -16.56583 -16.44469 -16.18134 -15.78148 -15.32594 -15.18604 -14.91592 -14.59334 -14.17287 -14.07532 -13.72973 -13.50752 -13.34497 -13.24820 -13.14487 -12.89066 -12.56795 -12.40271 -12.24487 -12.06665 -11.78743 -11.75788 -11.67487 -11.26814 -11.10769 -10.93240 -10.67168 -10.45131 -10.39087 -10.16067 -10.02600 -9.68373 -9.44942 -9.30982 -8.72059 -8.37101 -8.10458 -7.90607 -6.54145 -5.45251 -2.72526 1.15717 2.13298 2.33719 2.83949 3.48794 3.56211 3.58955 3.60800 3.63209 4.25376 4.39944 4.44996 4.49842 4.50455 4.59384 4.68745 4.73892 4.91685 4.98125 5.05999 5.15824 5.24854 5.25200 5.31234 5.33769 5.45256 5.46297 5.51567 5.59841 5.70358 5.76202 5.85310 5.98108 6.02820 6.24773 6.35560 6.55376 6.59937 6.95856 7.17608 7.35357 7.57476 7.80898 7.90432 7.92816 8.26417 9.16120 9.32298 10.03846 10.86926 11.73988 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.001980 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.249075 B =14138.148434 C =14859.462789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 S -0.269 6.269 4 C -0.069 4.069 5 C -0.125 4.125 6 C 0.520 3.480 7 O -0.535 6.535 8 N -0.718 5.718 9 C 0.134 3.866 10 H 0.111 0.889 11 C -0.167 4.167 12 C 0.490 3.510 13 O -0.420 6.420 14 N -0.606 5.606 15 C 0.103 3.897 16 C 0.156 3.844 17 N -0.588 5.588 18 C -0.184 4.184 19 H 0.070 0.930 20 C -0.001 4.001 21 N -0.922 5.922 22 Si 0.902 3.098 23 H -0.284 1.284 24 H -0.296 1.296 25 H -0.294 1.294 26 C 0.103 3.897 27 C 0.108 3.892 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.403 0.597 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.245 0.755 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.304 -2.184 10.002 29.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.235 4.235 3 S -0.043 6.043 4 C -0.217 4.217 5 C -0.166 4.166 6 C 0.305 3.695 7 O -0.411 6.411 8 N -0.370 5.370 9 C 0.028 3.972 10 H 0.129 0.871 11 C -0.209 4.209 12 C 0.273 3.727 13 O -0.285 6.285 14 N -0.345 5.345 15 C -0.001 4.001 16 C 0.030 3.970 17 N -0.313 5.313 18 C -0.311 4.311 19 H 0.088 0.912 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.734 3.266 23 H -0.209 1.209 24 H -0.224 1.224 25 H -0.221 1.221 26 C -0.024 4.024 27 C -0.017 4.017 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.238 0.762 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.049 0.951 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -26.790 -2.210 9.242 28.425 hybrid contribution 0.907 -0.753 -0.867 1.463 sum -25.883 -2.964 8.375 27.365 Atomic orbital electron populations 1.21520 0.92127 1.02647 1.03239 1.23300 1.00185 0.94861 1.05193 1.86794 1.05702 1.13574 1.98210 1.23064 0.92115 0.99871 1.06678 1.21360 0.91498 0.97844 1.05866 1.20470 0.88766 0.84602 0.75666 1.90752 1.76810 1.24688 1.48847 1.45930 1.06194 1.09282 1.75624 1.21815 0.78977 0.99691 0.96684 0.87121 1.22838 0.97551 1.03294 0.97221 1.20620 0.88375 0.80919 0.82777 1.91189 1.39189 1.57749 1.40379 1.47813 1.15615 1.50854 1.20195 1.22946 0.87840 0.93414 0.95880 1.22534 0.88889 0.99387 0.86205 1.45545 1.54203 1.25222 1.06379 1.18685 1.19926 1.07227 0.85310 0.91244 1.24513 1.00663 0.97564 0.96899 1.69782 1.40493 1.15585 1.31266 0.86186 0.78276 0.77361 0.84747 1.20937 1.22389 1.22138 1.22984 0.93356 0.92850 0.93240 1.22020 0.87020 0.96302 0.96330 0.91644 0.91628 0.91007 0.89923 0.89950 0.89120 0.89163 0.87765 0.87749 0.76196 0.88403 0.88648 0.90221 0.95055 0.90404 0.94472 0.94322 0.94387 0.90353 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.65 9.92 37.16 0.37 -0.28 16 2 C -0.09 -0.51 6.66 37.16 0.25 -0.27 16 3 S -0.27 -2.04 21.74 -107.50 -2.34 -4.37 16 4 C -0.07 -0.53 5.23 37.16 0.19 -0.33 16 5 C -0.12 -0.80 5.71 -27.88 -0.16 -0.96 16 6 C 0.52 4.94 7.83 -10.99 -0.09 4.85 16 7 O -0.53 -7.40 15.62 5.55 0.09 -7.31 16 8 N -0.72 -5.83 5.15 -52.23 -0.27 -6.10 16 9 C 0.13 1.50 3.53 -66.30 -0.23 1.27 16 10 H 0.11 1.41 7.54 -51.93 -0.39 1.02 16 11 C -0.17 -2.45 6.59 -26.74 -0.18 -2.63 16 12 C 0.49 9.75 7.50 -10.86 -0.08 9.67 16 13 O -0.42 -11.08 13.06 5.55 0.07 -11.01 16 14 N -0.61 -10.13 3.16 -166.63 -0.53 -10.66 16 15 C 0.10 1.89 4.93 -70.14 -0.35 1.54 16 16 C 0.16 3.75 6.57 -2.97 -0.02 3.74 16 17 N -0.59 -15.52 2.18 -178.09 -0.39 -15.91 16 18 C -0.18 -5.47 8.88 -15.06 -0.13 -5.60 16 19 H 0.07 2.06 7.83 -52.48 -0.41 1.65 16 20 C 0.00 -0.04 5.36 -17.43 -0.09 -0.13 16 21 N -0.92 -29.03 11.38 55.49 0.63 -28.40 16 22 Si 0.90 24.13 29.55 -169.99 -5.02 19.11 16 23 H -0.28 -7.37 7.11 56.52 0.40 -6.97 16 24 H -0.30 -7.87 7.11 56.52 0.40 -7.46 16 25 H -0.29 -8.00 7.11 56.52 0.40 -7.60 16 26 C 0.10 2.14 8.50 -2.97 -0.03 2.11 16 27 C 0.11 1.18 7.08 -3.12 -0.02 1.16 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 32 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 33 H 0.09 0.78 8.10 -51.92 -0.42 0.36 16 34 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 37 H 0.40 2.04 8.43 -40.82 -0.34 1.69 16 38 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.10 1.27 8.08 -51.93 -0.42 0.85 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.08 2.16 6.77 -51.93 -0.35 1.80 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.56 7.80 -51.93 -0.40 0.15 16 LS Contribution 394.25 15.07 5.94 5.94 Total: -1.00 -38.28 394.25 -10.17 -48.45 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -7.79 Total: -3.86 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: -0.57 Total: 14.13 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: -0.55 Total: -61.07 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.16 Total: -18.32 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.02 Total: 19.11 kcal Atomic # 16 Polarization: -2.04 SS G_CDS: -2.34 Total: -4.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -38.28 -10.17 -48.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108511015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.150 kcal (2) G-P(sol) polarization free energy of solvation -38.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds