Wall clock time and date at job start Wed Apr 1 2020 01:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81399 * 109.47272 * 2 1 4 4 C 1.81401 * 102.99839 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47078 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47442 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99517 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00458 * 179.97438 * 6 5 4 9 9 C 1.46495 * 120.00225 * 180.02562 * 8 6 5 10 10 H 1.08995 * 110.85821 * 328.78783 * 9 8 6 11 11 C 1.54626 * 111.00317 * 92.60746 * 9 8 6 12 12 C 1.51285 * 104.25919 * 142.71285 * 11 9 8 13 13 O 1.21288 * 124.94726 * 164.00931 * 12 11 9 14 14 N 1.34414 * 110.11060 * 344.14346 * 12 11 9 15 15 C 1.46510 * 124.34847 * 179.43672 * 14 12 11 16 16 C 1.53946 * 113.84020 * 321.05438 * 15 14 12 17 17 N 1.47580 * 86.11645 * 90.74870 * 16 15 14 18 18 C 1.36940 * 134.49194 * 204.64076 * 17 16 15 19 19 H 1.08004 * 119.99910 * 180.02562 * 18 17 16 20 20 C 1.38813 * 120.00130 * 0.02562 * 18 17 16 21 21 N 1.31623 * 119.99843 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00040 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47249 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47360 * 120.00281 * 22 20 18 25 25 H 1.48499 * 109.47453 * 240.00193 * 22 20 18 26 26 C 1.47585 * 91.01539 * 24.64210 * 17 16 15 27 27 C 1.46762 * 111.30469 * 359.17060 * 14 12 11 28 28 H 1.09001 * 109.47460 * 300.00507 * 1 2 3 29 29 H 1.09007 * 109.47208 * 60.00107 * 1 2 3 30 30 H 1.08995 * 109.47507 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46972 * 239.99621 * 2 1 3 32 32 H 1.09001 * 109.46763 * 119.99844 * 2 1 3 33 33 H 1.08999 * 109.47109 * 60.00021 * 4 3 2 34 34 H 1.08998 * 109.47122 * 299.99685 * 4 3 2 35 35 H 1.09001 * 109.47112 * 59.99432 * 5 4 3 36 36 H 1.09009 * 109.46887 * 300.00176 * 5 4 3 37 37 H 0.97007 * 119.99620 * 0.02562 * 8 6 5 38 38 H 1.09002 * 110.48593 * 261.60717 * 11 9 8 39 39 H 1.09000 * 110.48638 * 24.25291 * 11 9 8 40 40 H 1.09002 * 112.94617 * 189.36825 * 15 14 12 41 41 H 1.08996 * 113.77105 * 205.05282 * 16 15 14 42 42 H 1.09002 * 113.76556 * 336.45215 * 16 15 14 43 43 H 0.96992 * 119.99795 * 179.97438 * 21 20 18 44 44 H 1.08996 * 113.76681 * 221.05446 * 26 17 16 45 45 H 1.08994 * 113.76726 * 89.65745 * 26 17 16 46 46 H 1.09000 * 110.24495 * 136.27675 * 27 14 12 47 47 H 1.08993 * 110.24683 * 258.27904 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9371 1.5057 0.0008 5 6 4.6065 2.8815 0.0015 6 6 6.1039 2.7117 0.0015 7 8 6.5880 1.5996 0.0015 8 7 6.9051 3.7954 0.0016 9 6 8.3607 3.6302 0.0011 10 1 8.6483 2.7208 0.5285 11 6 8.9183 3.6335 -1.4412 12 6 10.2328 4.3741 -1.3308 13 8 11.1101 4.3609 -2.1682 14 7 10.2882 5.0466 -0.1683 15 6 11.4281 5.8597 0.2628 16 6 12.7967 5.2484 -0.0883 17 7 12.7010 6.0098 -1.3488 18 6 13.2395 5.8666 -2.5997 19 1 13.0058 6.5830 -3.3735 20 6 14.0857 4.8008 -2.8733 21 7 14.3701 3.9275 -1.9305 22 14 14.8197 4.6052 -4.5798 23 1 14.3468 5.7103 -5.4518 24 1 16.3014 4.6463 -4.4892 25 1 14.3950 3.3037 -5.1552 26 6 11.7919 6.9875 -0.7198 27 6 9.0576 4.8668 0.6109 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 4.2406 0.9540 -0.8890 34 1 4.2398 0.9544 0.8910 35 1 4.3029 3.4328 0.8915 36 1 4.3038 3.4333 -0.8885 37 1 6.5178 4.6848 0.0020 38 1 9.0800 2.6135 -1.7899 39 1 8.2411 4.1637 -2.1108 40 1 11.3475 6.1892 1.2987 41 1 13.6055 5.5780 0.5638 42 1 12.7728 4.1672 -0.2252 43 1 14.9611 3.1826 -2.1217 44 1 10.9658 7.2950 -1.3610 45 1 12.3055 7.8280 -0.2532 46 1 9.2976 4.6859 1.6587 47 1 8.4191 5.7449 0.5156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108511015.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:48 Heat of formation + Delta-G solvation = -18.483879 kcal Electronic energy + Delta-G solvation = -27438.330809 eV Core-core repulsion = 23556.060895 eV Total energy + Delta-G solvation = -3882.269914 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.72788 -40.61283 -38.70386 -37.35017 -35.09766 -34.09179 -33.76014 -33.64423 -31.30942 -29.14613 -28.30658 -26.48304 -26.05101 -25.10365 -24.11372 -22.46215 -22.08844 -21.43596 -19.27029 -18.69566 -18.46813 -17.62323 -17.16833 -17.07738 -16.84042 -16.77694 -16.48492 -15.75694 -15.72245 -15.53484 -15.30064 -14.98476 -14.81961 -14.61149 -14.38826 -14.18806 -14.00324 -13.77651 -13.65152 -13.21588 -13.02834 -12.93226 -12.80085 -12.77152 -12.51125 -12.41342 -12.27722 -12.20488 -12.17977 -11.89749 -11.58013 -11.36422 -10.98802 -10.94416 -10.80062 -10.46920 -9.96009 -9.35351 -8.68115 -8.62790 -7.72141 -4.96476 0.61172 1.38373 1.42226 1.49200 1.58847 1.58962 1.98799 2.00677 2.36807 2.56093 3.44030 3.44447 3.54562 3.63902 3.68288 3.90576 3.91435 3.95857 4.02487 4.06004 4.08764 4.10667 4.47436 4.52207 4.56409 4.60232 4.67502 4.70708 4.74044 4.83430 4.86428 4.88082 4.90042 4.92141 4.93752 4.97773 5.23614 5.25999 5.35877 5.43424 5.62833 6.05540 6.16075 6.50417 6.53063 7.08301 7.24056 7.68138 7.82670 8.74477 9.46800 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.001980 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.249075 B =14138.148434 C =14859.462789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 S -0.284 6.284 4 C -0.065 4.065 5 C -0.114 4.114 6 C 0.521 3.479 7 O -0.583 6.583 8 N -0.699 5.699 9 C 0.149 3.851 10 H 0.096 0.904 11 C -0.157 4.157 12 C 0.477 3.523 13 O -0.501 6.501 14 N -0.606 5.606 15 C 0.134 3.866 16 C 0.147 3.853 17 N -0.618 5.618 18 C -0.176 4.176 19 H 0.061 0.939 20 C -0.063 4.063 21 N -0.952 5.952 22 Si 0.956 3.044 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.306 1.306 26 C 0.104 3.896 27 C 0.111 3.889 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.424 0.576 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.029 0.971 42 H 0.031 0.969 43 H 0.234 0.766 44 H 0.039 0.961 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.436 -0.182 11.855 32.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.235 4.235 3 S -0.058 6.058 4 C -0.214 4.214 5 C -0.154 4.154 6 C 0.307 3.693 7 O -0.462 6.462 8 N -0.353 5.353 9 C 0.043 3.957 10 H 0.114 0.886 11 C -0.199 4.199 12 C 0.262 3.738 13 O -0.372 6.372 14 N -0.342 5.342 15 C 0.029 3.971 16 C 0.021 3.979 17 N -0.344 5.344 18 C -0.305 4.305 19 H 0.079 0.921 20 C -0.255 4.255 21 N -0.604 5.604 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.234 1.234 26 C -0.022 4.022 27 C -0.012 4.012 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.148 0.852 36 H 0.140 0.860 37 H 0.263 0.737 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.157 0.843 41 H 0.046 0.954 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.125 0.875 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -30.013 -0.122 11.154 32.019 hybrid contribution 1.747 -1.364 -1.399 2.621 sum -28.266 -1.485 9.756 29.939 Atomic orbital electron populations 1.21524 0.91165 1.03558 1.03022 1.23397 1.00958 0.93647 1.05488 1.86784 1.05535 1.15267 1.98209 1.22994 0.92326 1.00537 1.05560 1.21361 0.88702 0.97470 1.07906 1.21013 0.90010 0.83923 0.74320 1.90750 1.77782 1.26690 1.51006 1.45693 1.04566 1.10235 1.74782 1.21481 0.80776 0.99732 0.93750 0.88643 1.22718 0.95511 1.01440 1.00214 1.21449 0.88947 0.80708 0.82682 1.91141 1.42185 1.60617 1.43236 1.47947 1.16976 1.49442 1.19860 1.22616 0.85302 0.90961 0.98200 1.22489 0.92807 0.96795 0.85806 1.45841 1.54805 1.27608 1.06099 1.18874 1.18437 1.06226 0.87012 0.92091 1.25173 1.02358 0.97993 0.99954 1.69977 1.41604 1.16088 1.32687 0.85309 0.77559 0.76825 0.81552 1.19600 1.22048 1.23401 1.23215 0.92278 0.93383 0.93305 1.22375 0.84767 0.97373 0.96655 0.91718 0.91935 0.89526 0.89822 0.89512 0.90601 0.90015 0.85210 0.85961 0.73735 0.90533 0.86921 0.84303 0.95385 0.95059 0.95650 0.94298 0.91720 0.87459 0.87553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.07 9.92 71.98 0.71 -0.36 16 2 C -0.09 -0.92 6.66 71.98 0.48 -0.44 16 3 S -0.28 -3.85 21.74 -56.49 -1.23 -5.08 16 4 C -0.07 -0.92 5.23 71.98 0.38 -0.54 16 5 C -0.11 -1.13 5.71 29.85 0.17 -0.96 16 6 C 0.52 8.65 7.83 87.66 0.69 9.34 16 7 O -0.58 -15.74 15.62 -3.05 -0.05 -15.78 16 8 N -0.70 -8.79 5.15 -437.55 -2.25 -11.04 16 9 C 0.15 2.96 3.53 46.05 0.16 3.12 16 10 H 0.10 2.28 7.54 -2.39 -0.02 2.27 16 11 C -0.16 -4.51 6.59 30.59 0.20 -4.31 16 12 C 0.48 19.01 7.50 87.90 0.66 19.66 16 13 O -0.50 -27.55 13.06 -3.05 -0.04 -27.59 16 14 N -0.61 -18.73 3.16 -799.68 -2.52 -21.25 16 15 C 0.13 4.49 4.93 46.75 0.23 4.72 16 16 C 0.15 7.15 6.57 86.48 0.57 7.72 16 17 N -0.62 -32.95 2.18 -717.36 -1.56 -34.51 16 18 C -0.18 -10.78 8.88 84.03 0.75 -10.03 16 19 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 20 C -0.06 -3.99 5.36 84.86 0.45 -3.53 16 21 N -0.95 -62.88 11.38 21.65 0.25 -62.64 16 22 Si 0.96 51.55 29.55 68.60 2.03 53.57 16 23 H -0.27 -13.83 7.11 99.48 0.71 -13.13 16 24 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 25 H -0.31 -16.88 7.11 99.48 0.71 -16.17 16 26 C 0.10 4.08 8.50 86.48 0.74 4.81 16 27 C 0.11 1.88 7.08 86.83 0.61 2.49 16 28 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.08 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.08 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.42 2.04 8.43 -92.70 -0.78 1.26 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.11 2.81 8.08 -2.39 -0.02 2.79 16 40 H 0.14 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.03 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.03 1.80 6.77 -2.39 -0.02 1.79 16 43 H 0.23 15.29 8.31 -92.71 -0.77 14.52 16 44 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.11 1.07 7.80 -2.39 -0.02 1.06 16 Total: -1.00 -91.64 394.25 1.60 -90.04 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: 0.18 Total: 2.57 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 6.80 Total: 31.70 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -6.09 Total: -129.44 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.09 Total: -43.37 kcal Atomic # 14 Polarization: 51.55 SS G_CDS: 2.03 Total: 53.57 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -1.23 Total: -5.08 kcal Total: -91.64 1.60 -90.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108511015.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.559 kcal (2) G-P(sol) polarization free energy of solvation -91.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds