Wall clock time and date at job start Wed Apr 1 2020 00:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81393 * 102.99984 * 2 1 4 4 C 1.53002 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47016 * 305.00090 * 4 3 2 6 6 C 1.53004 * 109.47037 * 65.00101 * 4 3 2 7 7 C 1.50703 * 109.47359 * 185.00256 * 4 3 2 8 8 O 1.21283 * 119.99837 * 359.97438 * 7 4 3 9 9 N 1.34770 * 120.00001 * 180.02562 * 7 4 3 10 10 C 1.46497 * 119.99923 * 179.97438 * 9 7 4 11 11 H 1.08999 * 110.86071 * 31.21014 * 10 9 7 12 12 C 1.54624 * 111.00570 * 267.39297 * 10 9 7 13 13 C 1.51281 * 104.20087 * 266.66737 * 12 10 9 14 14 O 1.21279 * 124.94630 * 164.01180 * 13 12 10 15 15 N 1.34424 * 110.11017 * 343.74403 * 13 12 10 16 16 C 1.46503 * 124.34411 * 179.61223 * 15 13 12 17 17 C 1.53944 * 113.74019 * 38.72160 * 16 15 13 18 18 N 1.47817 * 86.03474 * 222.08118 * 17 16 15 19 19 C 1.36936 * 134.45995 * 204.64669 * 18 17 16 20 20 H 1.07997 * 120.00272 * 179.86401 * 19 18 17 21 21 C 1.38811 * 119.99499 * 359.86314 * 19 18 17 22 22 N 1.31611 * 120.00426 * 0.02562 * 21 19 18 23 23 Si 1.86812 * 119.99515 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47265 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46530 * 120.00262 * 23 21 19 26 26 H 1.48501 * 109.47033 * 240.00059 * 23 21 19 27 27 C 1.47579 * 91.05118 * 24.54703 * 18 17 16 28 28 C 1.46764 * 111.30306 * 359.59326 * 15 13 12 29 29 H 1.09001 * 109.46759 * 59.99679 * 1 2 3 30 30 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47047 * 299.99952 * 1 2 3 32 32 H 1.09000 * 109.47169 * 60.00196 * 3 2 1 33 33 H 1.08998 * 109.47519 * 300.00244 * 3 2 1 34 34 H 1.08994 * 109.46738 * 59.99931 * 6 4 3 35 35 H 1.08994 * 109.47057 * 179.97438 * 6 4 3 36 36 H 1.08999 * 109.47022 * 300.00045 * 6 4 3 37 37 H 0.96998 * 120.00102 * 359.97438 * 9 7 4 38 38 H 1.09000 * 110.48926 * 147.98551 * 12 10 9 39 39 H 1.09001 * 110.48194 * 25.34907 * 12 10 9 40 40 H 1.08999 * 112.94125 * 170.31080 * 16 15 13 41 41 H 1.08999 * 113.76941 * 336.33753 * 17 16 15 42 42 H 1.08993 * 113.77064 * 107.74770 * 17 16 15 43 43 H 0.97000 * 120.00227 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.77245 * 221.15415 * 27 18 17 45 45 H 1.09008 * 113.76816 * 89.75679 * 27 18 17 46 46 H 1.09002 * 110.24057 * 136.01578 * 28 15 13 47 47 H 1.08999 * 110.24524 * 258.01533 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.1694 1.3952 0.8427 6 6 4.3184 1.3915 -1.3064 7 6 4.0820 3.4029 0.1245 8 8 3.1954 4.2266 0.2040 9 7 5.3709 3.7960 0.1460 10 6 5.7010 5.2182 0.2659 11 1 4.9450 5.7444 0.8486 12 6 5.8759 5.8660 -1.1272 13 6 7.3603 5.7634 -1.4005 14 8 7.8776 5.9018 -2.4886 15 7 8.0232 5.5025 -0.2605 16 6 9.4755 5.3327 -0.1692 17 6 10.2699 6.2970 -1.0685 18 7 11.1231 5.1329 -1.3881 19 6 12.4150 4.9791 -1.8152 20 1 12.8155 3.9895 -1.9785 21 6 13.2097 6.0951 -2.0382 22 7 12.7218 7.3010 -1.8387 23 14 14.9724 5.8852 -2.6202 24 1 15.2763 4.4391 -2.7670 25 1 15.1449 6.5624 -3.9305 26 1 15.8969 6.4874 -1.6262 27 6 10.0248 4.2035 -1.0597 28 6 7.1052 5.4100 0.8809 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8032 2.2370 0.8900 33 1 1.8032 2.2371 -0.8899 34 1 3.8913 1.9361 -2.1484 35 1 5.4013 1.5147 -1.3062 36 1 4.0728 0.3333 -1.3960 37 1 6.0800 3.1372 0.0821 38 1 5.5634 6.9100 -1.1045 39 1 5.3107 5.3139 -1.8782 40 1 9.8350 5.2949 0.8591 41 1 9.7021 6.6722 -1.9199 42 1 10.7867 7.0843 -0.5198 43 1 13.2773 8.0809 -1.9942 44 1 10.3460 3.3225 -0.5040 45 1 9.3846 3.9625 -1.9085 46 1 7.3639 4.5542 1.5045 47 1 7.1382 6.3284 1.4668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108522082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:10 Heat of formation + Delta-G solvation = -8.631179 kcal Electronic energy + Delta-G solvation = -27750.651725 eV Core-core repulsion = 23868.809056 eV Total energy + Delta-G solvation = -3881.842669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.90798 -39.79055 -37.31666 -36.46378 -34.95989 -33.97127 -32.16875 -30.41605 -29.48159 -27.71257 -27.49170 -27.10173 -24.75786 -24.31182 -23.38983 -21.57764 -20.62806 -20.21118 -18.32016 -17.81170 -17.10768 -16.75713 -16.40238 -16.24743 -15.84421 -15.33750 -15.00212 -14.79058 -14.57618 -14.26761 -14.06551 -13.92907 -13.83545 -13.54673 -13.43304 -13.25060 -12.95402 -12.63824 -12.62703 -12.46609 -11.97149 -11.89508 -11.75506 -11.72607 -11.65472 -11.42407 -11.36848 -10.86111 -10.71159 -10.43310 -10.22886 -10.06459 -9.96859 -9.65490 -9.51593 -9.18872 -8.67916 -8.20668 -8.08615 -6.82954 -5.73545 -3.05626 1.18882 2.13182 2.26471 2.79971 2.93356 3.22980 3.41239 3.46542 3.48848 4.12723 4.19452 4.35921 4.41989 4.44435 4.50112 4.70673 4.71967 4.72972 4.84878 5.00188 5.10533 5.22160 5.23966 5.27225 5.33700 5.39195 5.41259 5.51843 5.53046 5.56101 5.63878 5.67492 5.81782 5.83299 6.13382 6.25721 6.48847 6.55352 6.85250 7.11364 7.28056 7.47719 7.57778 7.61843 7.83926 7.99966 8.54505 9.07165 9.73468 10.62129 11.43725 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.002098 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.892958 B =13341.377972 C =14004.266758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.260 6.260 3 C -0.066 4.066 4 C -0.095 4.095 5 H 0.108 0.892 6 C -0.149 4.149 7 C 0.527 3.473 8 O -0.538 6.538 9 N -0.717 5.717 10 C 0.133 3.867 11 H 0.117 0.883 12 C -0.167 4.167 13 C 0.512 3.488 14 O -0.509 6.509 15 N -0.609 5.609 16 C 0.098 3.902 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.081 0.919 21 C -0.008 4.008 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.112 3.888 28 C 0.095 3.905 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.406 0.594 38 H 0.111 0.889 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.042 0.958 45 H 0.039 0.961 46 H 0.083 0.917 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.276 -11.275 9.110 28.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.034 6.034 3 C -0.214 4.214 4 C -0.117 4.117 5 H 0.126 0.874 6 C -0.206 4.206 7 C 0.312 3.688 8 O -0.415 6.415 9 N -0.369 5.369 10 C 0.027 3.973 11 H 0.135 0.865 12 C -0.209 4.209 13 C 0.298 3.702 14 O -0.383 6.383 15 N -0.345 5.345 16 C -0.004 4.004 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.099 0.901 21 C -0.205 4.205 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.217 1.217 27 C -0.015 4.015 28 C -0.030 4.030 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.241 0.759 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.102 0.898 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -23.556 -11.384 8.487 27.505 hybrid contribution 0.416 0.690 -0.378 0.890 sum -23.140 -10.694 8.110 26.751 Atomic orbital electron populations 1.23391 0.94004 1.06525 1.05113 1.86796 1.07613 1.10923 1.98084 1.23210 0.97714 0.94019 1.06497 1.21046 0.95051 0.93459 1.02129 0.87399 1.21878 1.01184 1.02636 0.94947 1.20455 0.82458 0.90588 0.75330 1.90715 1.46922 1.54583 1.49252 1.45992 1.07763 1.08388 1.74745 1.21876 0.97041 0.81881 0.96465 0.86488 1.22828 0.95704 1.03942 0.98380 1.20681 0.88858 0.76454 0.84201 1.90792 1.73477 1.49044 1.25029 1.48544 1.07331 1.70839 1.07753 1.24060 0.74924 1.00864 1.00563 1.22788 0.88191 0.91545 0.94820 1.45710 1.06872 1.01787 1.78738 1.19026 0.84655 0.92962 1.38148 0.90148 1.24805 0.98560 0.95144 1.01973 1.69834 1.35564 0.96823 1.54346 0.86033 0.84246 0.77316 0.78079 1.20449 1.21731 1.21708 1.22910 0.89898 0.93445 0.95252 1.22353 0.87577 1.03134 0.89920 0.90363 0.88022 0.90421 0.89108 0.89264 0.91692 0.91510 0.90181 0.75895 0.87091 0.88171 0.87683 0.92583 0.91178 0.93690 0.94035 0.94363 0.89827 0.89606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.76 101.05 1.09 0.47 16 2 S -0.26 -1.92 21.19 -107.50 -2.28 -4.19 16 3 C -0.07 -0.49 4.73 37.16 0.18 -0.32 16 4 C -0.09 -0.67 2.72 -91.77 -0.25 -0.92 16 5 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 6 C -0.15 -1.02 8.92 37.16 0.33 -0.69 16 7 C 0.53 4.75 7.15 -10.99 -0.08 4.67 16 8 O -0.54 -6.56 15.56 5.56 0.09 -6.48 16 9 N -0.72 -5.76 5.01 -52.23 -0.26 -6.02 16 10 C 0.13 1.17 3.53 -66.30 -0.23 0.94 16 11 H 0.12 0.97 7.54 -51.93 -0.39 0.58 16 12 C -0.17 -1.90 6.59 -26.74 -0.18 -2.08 16 13 C 0.51 8.31 7.42 -10.86 -0.08 8.23 16 14 O -0.51 -11.11 14.61 5.56 0.08 -11.03 16 15 N -0.61 -8.80 3.16 -166.64 -0.53 -9.33 16 16 C 0.10 1.81 4.81 -70.15 -0.34 1.47 16 17 C 0.15 3.76 6.90 -2.84 -0.02 3.74 16 18 N -0.60 -16.09 3.70 -177.89 -0.66 -16.75 16 19 C -0.22 -6.36 10.70 -15.06 -0.16 -6.52 16 20 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 21 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -28.06 11.39 55.49 0.63 -27.43 16 23 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 C 0.11 2.36 8.44 -2.97 -0.03 2.33 16 28 C 0.09 0.87 6.98 -3.12 -0.02 0.85 16 29 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.10 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.09 0.71 7.96 -51.92 -0.41 0.30 16 33 H 0.09 0.72 8.14 -51.92 -0.42 0.29 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.43 7.56 -51.93 -0.39 0.03 16 36 H 0.08 0.55 7.13 -51.93 -0.37 0.18 16 37 H 0.41 2.79 8.08 -40.82 -0.33 2.46 16 38 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 40 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.06 1.53 5.71 -51.93 -0.30 1.24 16 42 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 43 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.86 7.26 -51.92 -0.38 0.48 16 46 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 392.77 15.07 5.92 5.92 Total: -1.00 -36.51 392.77 -9.47 -45.98 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -7.56 Total: -0.11 kcal Atomic # 6 Polarization: 11.72 SS G_CDS: 0.11 Total: 11.84 kcal Atomic # 7 Polarization: -58.70 SS G_CDS: -0.81 Total: -59.52 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: 0.17 Total: -17.51 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Atomic # 16 Polarization: -1.92 SS G_CDS: -2.28 Total: -4.19 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -36.51 -9.47 -45.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108522082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.350 kcal (2) G-P(sol) polarization free energy of solvation -36.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds