Wall clock time and date at job start Wed Apr 1 2020 00:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81393 * 102.99984 * 2 1 4 4 C 1.53002 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.47016 * 305.00090 * 4 3 2 6 6 C 1.53004 * 109.47037 * 65.00101 * 4 3 2 7 7 C 1.50703 * 109.47359 * 185.00256 * 4 3 2 8 8 O 1.21283 * 119.99837 * 359.97438 * 7 4 3 9 9 N 1.34770 * 120.00001 * 180.02562 * 7 4 3 10 10 C 1.46497 * 119.99923 * 179.97438 * 9 7 4 11 11 H 1.08999 * 110.86071 * 31.21014 * 10 9 7 12 12 C 1.54624 * 111.00570 * 267.39297 * 10 9 7 13 13 C 1.51281 * 104.20087 * 266.66737 * 12 10 9 14 14 O 1.21279 * 124.94630 * 164.01180 * 13 12 10 15 15 N 1.34424 * 110.11017 * 343.74403 * 13 12 10 16 16 C 1.46503 * 124.34411 * 179.61223 * 15 13 12 17 17 C 1.53944 * 113.74019 * 38.72160 * 16 15 13 18 18 N 1.47817 * 86.03474 * 222.08118 * 17 16 15 19 19 C 1.36936 * 134.45995 * 204.64669 * 18 17 16 20 20 H 1.07997 * 120.00272 * 179.86401 * 19 18 17 21 21 C 1.38811 * 119.99499 * 359.86314 * 19 18 17 22 22 N 1.31611 * 120.00426 * 0.02562 * 21 19 18 23 23 Si 1.86812 * 119.99515 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47265 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46530 * 120.00262 * 23 21 19 26 26 H 1.48501 * 109.47033 * 240.00059 * 23 21 19 27 27 C 1.47579 * 91.05118 * 24.54703 * 18 17 16 28 28 C 1.46764 * 111.30306 * 359.59326 * 15 13 12 29 29 H 1.09001 * 109.46759 * 59.99679 * 1 2 3 30 30 H 1.08998 * 109.47083 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47047 * 299.99952 * 1 2 3 32 32 H 1.09000 * 109.47169 * 60.00196 * 3 2 1 33 33 H 1.08998 * 109.47519 * 300.00244 * 3 2 1 34 34 H 1.08994 * 109.46738 * 59.99931 * 6 4 3 35 35 H 1.08994 * 109.47057 * 179.97438 * 6 4 3 36 36 H 1.08999 * 109.47022 * 300.00045 * 6 4 3 37 37 H 0.96998 * 120.00102 * 359.97438 * 9 7 4 38 38 H 1.09000 * 110.48926 * 147.98551 * 12 10 9 39 39 H 1.09001 * 110.48194 * 25.34907 * 12 10 9 40 40 H 1.08999 * 112.94125 * 170.31080 * 16 15 13 41 41 H 1.08999 * 113.76941 * 336.33753 * 17 16 15 42 42 H 1.08993 * 113.77064 * 107.74770 * 17 16 15 43 43 H 0.97000 * 120.00227 * 179.97438 * 22 21 19 44 44 H 1.09000 * 113.77245 * 221.15415 * 27 18 17 45 45 H 1.09008 * 113.76816 * 89.75679 * 27 18 17 46 46 H 1.09002 * 110.24057 * 136.01578 * 28 15 13 47 47 H 1.08999 * 110.24524 * 258.01533 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.1694 1.3952 0.8427 6 6 4.3184 1.3915 -1.3064 7 6 4.0820 3.4029 0.1245 8 8 3.1954 4.2266 0.2040 9 7 5.3709 3.7960 0.1460 10 6 5.7010 5.2182 0.2659 11 1 4.9450 5.7444 0.8486 12 6 5.8759 5.8660 -1.1272 13 6 7.3603 5.7634 -1.4005 14 8 7.8776 5.9018 -2.4886 15 7 8.0232 5.5025 -0.2605 16 6 9.4755 5.3327 -0.1692 17 6 10.2699 6.2970 -1.0685 18 7 11.1231 5.1329 -1.3881 19 6 12.4150 4.9791 -1.8152 20 1 12.8155 3.9895 -1.9785 21 6 13.2097 6.0951 -2.0382 22 7 12.7218 7.3010 -1.8387 23 14 14.9724 5.8852 -2.6202 24 1 15.2763 4.4391 -2.7670 25 1 15.1449 6.5624 -3.9305 26 1 15.8969 6.4874 -1.6262 27 6 10.0248 4.2035 -1.0597 28 6 7.1052 5.4100 0.8809 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8032 2.2370 0.8900 33 1 1.8032 2.2371 -0.8899 34 1 3.8913 1.9361 -2.1484 35 1 5.4013 1.5147 -1.3062 36 1 4.0728 0.3333 -1.3960 37 1 6.0800 3.1372 0.0821 38 1 5.5634 6.9100 -1.1045 39 1 5.3107 5.3139 -1.8782 40 1 9.8350 5.2949 0.8591 41 1 9.7021 6.6722 -1.9199 42 1 10.7867 7.0843 -0.5198 43 1 13.2773 8.0809 -1.9942 44 1 10.3460 3.3225 -0.5040 45 1 9.3846 3.9625 -1.9085 46 1 7.3639 4.5542 1.5045 47 1 7.1382 6.3284 1.4668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108522082.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:09 Heat of formation + Delta-G solvation = -34.585088 kcal Electronic energy + Delta-G solvation = -27751.777171 eV Core-core repulsion = 23868.809056 eV Total energy + Delta-G solvation = -3882.968115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96196 -40.77055 -38.95184 -37.66822 -35.61123 -35.09438 -34.07863 -31.64707 -29.90172 -29.19168 -28.50545 -27.98733 -26.60376 -25.38643 -24.80419 -22.45889 -22.07832 -21.08842 -19.71886 -18.80178 -18.47645 -17.90927 -17.69684 -17.00064 -16.89116 -16.51756 -16.33008 -16.03894 -15.61699 -15.38854 -15.14055 -14.95817 -14.64923 -14.59820 -14.31336 -14.18928 -14.06157 -13.81349 -13.42660 -13.41076 -13.25009 -13.16172 -13.03256 -12.82906 -12.74684 -12.69258 -12.48609 -12.32698 -12.20986 -12.00592 -11.85096 -11.52218 -11.07202 -11.00093 -10.78654 -10.63491 -10.13115 -9.55182 -8.93837 -8.64547 -7.92947 -5.27278 0.66903 1.42843 1.45494 1.54355 1.55629 1.62921 1.65008 1.99090 2.16489 2.48216 3.25490 3.35840 3.46890 3.48053 3.54986 3.78508 3.80880 3.83279 3.88022 4.23681 4.27014 4.29044 4.34241 4.37489 4.52605 4.53722 4.63720 4.66666 4.69680 4.79001 4.81155 4.86340 4.88726 4.91112 4.94225 4.98110 5.22299 5.23732 5.27917 5.42408 5.48564 5.86381 5.90117 6.28274 6.45724 6.88227 7.15912 7.26657 7.57540 8.52931 9.24514 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023665 B = 0.002098 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.892958 B =13341.377972 C =14004.266758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.286 6.286 3 C -0.059 4.059 4 C -0.088 4.088 5 H 0.125 0.875 6 C -0.145 4.145 7 C 0.530 3.470 8 O -0.570 6.570 9 N -0.710 5.710 10 C 0.146 3.854 11 H 0.134 0.866 12 C -0.155 4.155 13 C 0.501 3.499 14 O -0.576 6.576 15 N -0.606 5.606 16 C 0.138 3.862 17 C 0.146 3.854 18 N -0.636 5.636 19 C -0.234 4.234 20 H 0.087 0.913 21 C -0.071 4.071 22 N -0.955 5.955 23 Si 0.983 3.017 24 H -0.262 1.262 25 H -0.297 1.297 26 H -0.286 1.286 27 C 0.115 3.885 28 C 0.095 3.905 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.126 0.874 39 H 0.096 0.904 40 H 0.137 0.863 41 H 0.021 0.979 42 H 0.040 0.960 43 H 0.248 0.752 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.114 0.886 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.265 -13.024 11.277 30.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.060 6.060 3 C -0.207 4.207 4 C -0.110 4.110 5 H 0.143 0.857 6 C -0.203 4.203 7 C 0.316 3.684 8 O -0.449 6.449 9 N -0.362 5.362 10 C 0.040 3.960 11 H 0.152 0.848 12 C -0.197 4.197 13 C 0.290 3.710 14 O -0.455 6.455 15 N -0.339 5.339 16 C 0.034 3.966 17 C 0.020 3.980 18 N -0.363 5.363 19 C -0.362 4.362 20 H 0.105 0.895 21 C -0.264 4.264 22 N -0.604 5.604 23 Si 0.811 3.189 24 H -0.186 1.186 25 H -0.224 1.224 26 H -0.213 1.213 27 C -0.011 4.011 28 C -0.027 4.027 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.251 0.749 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.154 0.846 41 H 0.039 0.961 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.089 0.911 45 H 0.041 0.959 46 H 0.132 0.868 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -24.586 -13.189 10.712 29.886 hybrid contribution 0.610 1.200 -1.081 1.727 sum -23.976 -11.989 9.631 28.484 Atomic orbital electron populations 1.23461 0.91868 1.07468 1.05703 1.86848 1.10105 1.10954 1.98124 1.23118 0.97977 0.93839 1.05784 1.21032 0.94882 0.92298 1.02788 0.85706 1.21841 1.01454 1.02511 0.94446 1.20717 0.82239 0.91028 0.74409 1.90708 1.47841 1.55528 1.50791 1.45962 1.07799 1.08315 1.74116 1.21824 0.97328 0.82228 0.94577 0.84804 1.22788 0.91573 1.05272 1.00044 1.21538 0.90905 0.75029 0.83497 1.90761 1.75147 1.51860 1.27739 1.48480 1.06332 1.69745 1.09333 1.23347 0.76882 0.96090 1.00277 1.22598 0.88788 0.91757 0.94886 1.46152 1.07337 1.03992 1.78769 1.19475 0.86106 0.93300 1.37368 0.89547 1.25730 1.02974 0.94888 1.02781 1.70047 1.36971 0.97465 1.55879 0.84941 0.79046 0.77989 0.76912 1.18595 1.22436 1.21259 1.22996 0.88146 0.94555 0.95395 1.22707 0.86039 1.05777 0.88149 0.89924 0.86898 0.89712 0.89533 0.90218 0.92754 0.90877 0.90047 0.74944 0.85595 0.88553 0.84554 0.96123 0.94187 0.94305 0.91100 0.95861 0.86788 0.87215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.76 113.37 1.22 0.22 16 2 S -0.29 -3.83 21.19 -56.49 -1.20 -5.03 16 3 C -0.06 -0.80 4.73 71.98 0.34 -0.46 16 4 C -0.09 -1.07 2.72 -11.54 -0.03 -1.10 16 5 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 6 C -0.14 -1.77 8.92 71.98 0.64 -1.13 16 7 C 0.53 8.34 7.15 87.66 0.63 8.97 16 8 O -0.57 -12.81 15.56 -3.04 -0.05 -12.85 16 9 N -0.71 -9.23 5.01 -437.54 -2.19 -11.42 16 10 C 0.15 2.08 3.53 46.05 0.16 2.25 16 11 H 0.13 1.67 7.54 -2.39 -0.02 1.65 16 12 C -0.16 -3.29 6.59 30.59 0.20 -3.09 16 13 C 0.50 16.14 7.42 87.90 0.65 16.79 16 14 O -0.58 -26.29 14.61 -3.02 -0.04 -26.34 16 15 N -0.61 -16.31 3.16 -799.70 -2.52 -18.84 16 16 C 0.14 4.87 4.81 46.75 0.22 5.09 16 17 C 0.15 7.44 6.90 86.44 0.60 8.04 16 18 N -0.64 -34.35 3.70 -716.71 -2.65 -37.00 16 19 C -0.23 -13.69 10.70 84.03 0.90 -12.79 16 20 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 21 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 22 N -0.95 -60.41 11.39 21.65 0.25 -60.16 16 23 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 26 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 27 C 0.12 4.74 8.44 86.49 0.73 5.47 16 28 C 0.10 1.36 6.98 86.83 0.61 1.96 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 1.25 7.96 -2.39 -0.02 1.24 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.79 7.56 -2.39 -0.02 0.77 16 36 H 0.08 1.00 7.13 -2.39 -0.02 0.98 16 37 H 0.41 4.26 8.08 -92.71 -0.75 3.51 16 38 H 0.13 2.33 8.14 -2.39 -0.02 2.32 16 39 H 0.10 2.17 8.09 -2.39 -0.02 2.15 16 40 H 0.14 4.05 8.14 -2.39 -0.02 4.03 16 41 H 0.02 1.21 5.71 -2.39 -0.01 1.20 16 42 H 0.04 2.24 7.16 -2.39 -0.02 2.22 16 43 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 45 H 0.02 1.05 7.26 -2.38 -0.02 1.03 16 46 H 0.11 1.07 8.08 -2.39 -0.02 1.05 16 47 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -84.55 392.77 1.17 -83.38 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: 0.22 Total: 12.54 kcal Atomic # 6 Polarization: 19.14 SS G_CDS: 7.34 Total: 26.47 kcal Atomic # 7 Polarization: -120.30 SS G_CDS: -7.13 Total: -127.42 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -0.09 Total: -39.19 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Atomic # 16 Polarization: -3.83 SS G_CDS: -1.20 Total: -5.03 kcal Total: -84.55 1.17 -83.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108522082.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.793 kcal (2) G-P(sol) polarization free energy of solvation -84.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds