Wall clock time and date at job start Wed Apr 1 2020 00:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81400 * 103.00522 * 2 1 4 4 C 1.52999 * 109.47050 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46929 * 304.99127 * 4 3 2 6 6 C 1.52997 * 109.47317 * 65.00023 * 4 3 2 7 7 C 1.50706 * 109.46573 * 184.99948 * 4 3 2 8 8 O 1.21279 * 120.00072 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99762 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00258 * 180.02562 * 9 7 4 11 11 H 1.09005 * 110.85117 * 322.66418 * 10 9 7 12 12 C 1.54629 * 110.97275 * 86.44708 * 10 9 7 13 13 C 1.51279 * 104.19621 * 142.91921 * 12 10 9 14 14 O 1.21279 * 124.94309 * 163.71731 * 13 12 10 15 15 N 1.34420 * 110.11676 * 343.75033 * 13 12 10 16 16 C 1.46498 * 124.35214 * 179.57400 * 15 13 12 17 17 C 1.53941 * 113.74219 * 38.71168 * 16 15 13 18 18 N 1.47816 * 86.03909 * 222.08646 * 17 16 15 19 19 C 1.36937 * 134.45874 * 204.64598 * 18 17 16 20 20 H 1.08002 * 119.99853 * 179.86868 * 19 18 17 21 21 C 1.38811 * 119.99711 * 359.86733 * 19 18 17 22 22 N 1.31614 * 120.00263 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99525 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47164 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.46785 * 119.99985 * 23 21 19 26 26 H 1.48504 * 109.46880 * 239.99698 * 23 21 19 27 27 C 1.47581 * 91.04533 * 24.55124 * 18 17 16 28 28 C 1.46764 * 111.29956 * 359.59161 * 15 13 12 29 29 H 1.08994 * 109.46919 * 300.00387 * 1 2 3 30 30 H 1.09000 * 109.47004 * 59.99806 * 1 2 3 31 31 H 1.08992 * 109.47369 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47128 * 59.99759 * 3 2 1 33 33 H 1.08998 * 109.46441 * 300.00221 * 3 2 1 34 34 H 1.09002 * 109.47153 * 299.99641 * 6 4 3 35 35 H 1.09001 * 109.46832 * 179.97438 * 6 4 3 36 36 H 1.09004 * 109.47261 * 59.99813 * 6 4 3 37 37 H 0.96999 * 120.00047 * 359.97438 * 9 7 4 38 38 H 1.09000 * 110.48993 * 261.59902 * 12 10 9 39 39 H 1.09003 * 110.48120 * 24.10975 * 12 10 9 40 40 H 1.08998 * 112.94643 * 170.31266 * 16 15 13 41 41 H 1.08996 * 113.77338 * 336.35376 * 17 16 15 42 42 H 1.09004 * 113.76931 * 107.75333 * 17 16 15 43 43 H 0.97001 * 120.00185 * 179.97438 * 22 21 19 44 44 H 1.09003 * 113.76511 * 221.14645 * 27 18 17 45 45 H 1.09000 * 113.77287 * 89.75673 * 27 18 17 46 46 H 1.08998 * 110.24460 * 258.01790 * 28 15 13 47 47 H 1.09001 * 110.24485 * 136.01484 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7425 1.9397 -0.0006 5 1 4.1702 1.3950 0.8410 6 6 4.3173 1.3916 -1.3083 7 6 4.0822 3.4028 0.1232 8 8 3.1956 4.2265 0.2035 9 7 5.3712 3.7959 0.1436 10 6 5.7015 5.2180 0.2645 11 1 4.9933 5.8297 -0.2944 12 6 5.7547 5.6496 1.7484 13 6 6.8950 6.6421 1.8055 14 8 7.0925 7.4218 2.7132 15 7 7.6570 6.5346 0.7034 16 6 8.8402 7.3551 0.4332 17 6 9.6987 7.6344 1.6802 18 7 9.8129 9.0155 1.1661 19 6 10.7234 10.0259 1.3254 20 1 10.5746 10.9709 0.8240 21 6 11.8375 9.8355 2.1312 22 7 12.0186 8.6842 2.7425 23 14 13.0792 11.2141 2.3489 24 1 12.6482 12.3973 1.5619 25 1 13.1661 11.5795 3.7856 26 1 14.4105 10.7611 1.8719 27 6 8.5537 8.8675 0.4109 28 6 7.1511 5.4899 -0.1948 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8033 2.2371 0.8899 33 1 1.8033 2.2370 -0.8900 34 1 4.0716 0.3334 -1.3978 35 1 5.4004 1.5148 -1.3088 36 1 3.8896 1.9364 -2.1499 37 1 6.0802 3.1371 0.0790 38 1 4.8191 6.1262 2.0409 39 1 5.9609 4.7914 2.3881 40 1 9.4136 7.0044 -0.4248 41 1 9.1487 7.5588 2.6182 42 1 10.6430 7.0902 1.6943 43 1 12.7973 8.5510 3.3053 44 1 8.5855 9.3060 -0.5865 45 1 7.6665 9.1549 0.9752 46 1 7.7529 4.5862 -0.0989 47 1 7.1602 5.8424 -1.2262 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108522083.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:12 Heat of formation + Delta-G solvation = -34.278906 kcal Electronic energy + Delta-G solvation = -27334.733254 eV Core-core repulsion = 23451.778416 eV Total energy + Delta-G solvation = -3882.954838 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93861 -40.82089 -38.97291 -37.70548 -35.59862 -35.22760 -34.12519 -31.61579 -29.89892 -29.19912 -28.51272 -27.94439 -26.62134 -25.40574 -24.71238 -22.51568 -22.13475 -21.11794 -19.78362 -18.80970 -18.40938 -17.87245 -17.63531 -17.15214 -16.90361 -16.49683 -16.34254 -16.06135 -15.63922 -15.35424 -15.16901 -14.98618 -14.65748 -14.61861 -14.46894 -14.19912 -14.02300 -13.81384 -13.62556 -13.43290 -13.28911 -13.22114 -12.95496 -12.84644 -12.77228 -12.59210 -12.34381 -12.20832 -12.15450 -12.03433 -11.87892 -11.52279 -11.13885 -11.00462 -10.82007 -10.64819 -10.12712 -9.58253 -8.95044 -8.63497 -7.93590 -5.28080 0.67128 1.42872 1.45561 1.53974 1.55881 1.60234 1.64196 1.86092 2.20360 2.48056 3.24910 3.32264 3.46214 3.48353 3.57076 3.77445 3.80144 3.84772 3.97486 4.02664 4.24506 4.32591 4.33748 4.37606 4.51733 4.56605 4.58012 4.64917 4.71528 4.75916 4.82431 4.89080 4.91184 4.91521 4.95798 5.04750 5.20241 5.21793 5.36810 5.40493 5.47136 5.83644 5.88717 6.24112 6.49829 6.87841 7.19662 7.21986 7.56462 8.51948 9.23953 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.041663 B = 0.001782 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.897543 B =15711.173093 C =15818.849804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.280 6.280 3 C -0.062 4.062 4 C -0.087 4.087 5 H 0.122 0.878 6 C -0.143 4.143 7 C 0.528 3.472 8 O -0.575 6.575 9 N -0.700 5.700 10 C 0.151 3.849 11 H 0.107 0.893 12 C -0.155 4.155 13 C 0.503 3.497 14 O -0.574 6.574 15 N -0.605 5.605 16 C 0.137 3.863 17 C 0.148 3.852 18 N -0.635 5.635 19 C -0.237 4.237 20 H 0.086 0.914 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.985 3.015 24 H -0.263 1.263 25 H -0.296 1.296 26 H -0.284 1.284 27 C 0.111 3.889 28 C 0.100 3.900 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.422 0.578 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.141 0.859 41 H 0.021 0.979 42 H 0.044 0.956 43 H 0.249 0.751 44 H 0.069 0.931 45 H 0.021 0.979 46 H 0.106 0.894 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.355 -22.983 -12.575 33.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.054 6.054 3 C -0.211 4.211 4 C -0.109 4.109 5 H 0.140 0.860 6 C -0.200 4.200 7 C 0.314 3.686 8 O -0.454 6.454 9 N -0.354 5.354 10 C 0.045 3.955 11 H 0.124 0.876 12 C -0.196 4.196 13 C 0.292 3.708 14 O -0.453 6.453 15 N -0.338 5.338 16 C 0.034 3.966 17 C 0.022 3.978 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.603 5.603 23 Si 0.812 3.188 24 H -0.188 1.188 25 H -0.223 1.223 26 H -0.211 1.211 27 C -0.015 4.015 28 C -0.023 4.023 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.261 0.739 38 H 0.115 0.885 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.039 0.961 46 H 0.124 0.876 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.886 -22.688 -11.996 32.467 hybrid contribution 0.096 1.862 0.991 2.111 sum -19.790 -20.826 -11.006 30.765 Atomic orbital electron populations 1.23464 0.92152 1.07461 1.05617 1.86759 1.09833 1.10739 1.98113 1.23146 0.98450 0.93916 1.05585 1.21047 0.94595 0.91749 1.03557 0.85992 1.21862 1.02173 1.02314 0.93697 1.20850 0.82234 0.91184 0.74368 1.90735 1.48206 1.55751 1.50685 1.45714 1.07985 1.07376 1.74289 1.21549 0.96712 0.83553 0.93733 0.87554 1.22752 0.97257 0.99449 1.00144 1.21473 0.84425 0.83624 0.81311 1.90761 1.74085 1.41797 1.38641 1.48450 1.27278 1.36939 1.21119 1.23391 0.84880 0.88888 0.99471 1.22591 0.95689 0.85057 0.94456 1.46151 1.21662 1.12945 1.55404 1.19484 0.99412 0.93379 1.24281 0.89674 1.25721 1.00931 1.00029 0.99456 1.70040 1.29827 1.24971 1.35433 0.84927 0.78421 0.78450 0.76995 1.18753 1.22340 1.21092 1.23017 0.88380 0.94502 0.95639 1.22546 0.92450 0.91913 0.95354 0.90107 0.89775 0.86849 0.90402 0.89923 0.90301 0.89464 0.92231 0.73895 0.88514 0.86283 0.84185 0.96122 0.93797 0.94210 0.91261 0.96138 0.87561 0.86781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.76 113.37 1.22 0.28 16 2 S -0.28 -3.33 21.19 -56.49 -1.20 -4.53 16 3 C -0.06 -0.78 4.73 71.98 0.34 -0.44 16 4 C -0.09 -0.83 2.72 -11.54 -0.03 -0.86 16 5 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 6 C -0.14 -0.86 8.92 71.98 0.64 -0.22 16 7 C 0.53 7.45 7.15 87.66 0.63 8.08 16 8 O -0.58 -13.30 15.66 -3.03 -0.05 -13.34 16 9 N -0.70 -6.86 5.08 -437.53 -2.22 -9.08 16 10 C 0.15 2.28 3.43 46.05 0.16 2.44 16 11 H 0.11 1.83 7.72 -2.38 -0.02 1.81 16 12 C -0.15 -3.46 6.59 30.59 0.20 -3.26 16 13 C 0.50 17.00 7.42 87.90 0.65 17.65 16 14 O -0.57 -27.03 14.61 -3.02 -0.04 -27.08 16 15 N -0.60 -17.16 3.15 -799.72 -2.52 -19.68 16 16 C 0.14 5.01 4.81 46.74 0.22 5.24 16 17 C 0.15 7.62 6.90 86.44 0.60 8.22 16 18 N -0.63 -34.96 3.70 -716.63 -2.65 -37.61 16 19 C -0.24 -14.07 10.70 84.03 0.90 -13.17 16 20 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 21 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 22 N -0.95 -60.32 11.39 21.65 0.25 -60.07 16 23 Si 0.98 47.43 29.55 68.60 2.03 49.45 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 26 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 27 C 0.11 4.80 8.44 86.49 0.73 5.53 16 28 C 0.10 1.45 7.07 86.83 0.61 2.07 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.08 1.18 7.95 -2.39 -0.02 1.16 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 0.54 7.13 -2.39 -0.02 0.53 16 35 H 0.09 0.16 7.56 -2.39 -0.02 0.14 16 36 H 0.06 0.44 8.14 -2.38 -0.02 0.43 16 37 H 0.42 1.37 7.78 -92.71 -0.72 0.65 16 38 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.12 2.32 8.08 -2.39 -0.02 2.30 16 40 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 41 H 0.02 1.22 5.72 -2.39 -0.01 1.21 16 42 H 0.04 2.45 7.17 -2.39 -0.02 2.43 16 43 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.02 0.99 7.25 -2.39 -0.02 0.97 16 46 H 0.11 0.98 7.77 -2.39 -0.02 0.96 16 47 H 0.11 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -86.89 392.48 1.18 -85.71 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 0.25 Total: 8.29 kcal Atomic # 6 Polarization: 20.61 SS G_CDS: 7.34 Total: 27.95 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -7.15 Total: -126.45 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.09 Total: -40.42 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Atomic # 16 Polarization: -3.33 SS G_CDS: -1.20 Total: -4.53 kcal Total: -86.89 1.18 -85.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108522083.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.435 kcal (2) G-P(sol) polarization free energy of solvation -86.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds