Wall clock time and date at job start Wed Apr 1 2020 00:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00088 * 2 1 4 4 C 1.53006 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46705 * 55.00284 * 4 3 2 6 6 C 1.52998 * 109.47022 * 295.00143 * 4 3 2 7 7 C 1.50702 * 109.46985 * 174.99736 * 4 3 2 8 8 O 1.21277 * 120.00085 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99898 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99928 * 180.02562 * 9 7 4 11 11 H 1.09001 * 110.85882 * 322.66302 * 10 9 7 12 12 C 1.54626 * 110.96948 * 86.45638 * 10 9 7 13 13 C 1.51285 * 104.19600 * 142.91740 * 12 10 9 14 14 O 1.21280 * 124.94216 * 163.71155 * 13 12 10 15 15 N 1.34414 * 110.11441 * 343.74503 * 13 12 10 16 16 C 1.46500 * 124.35040 * 179.57471 * 15 13 12 17 17 C 1.53939 * 113.74151 * 38.71374 * 16 15 13 18 18 N 1.47810 * 86.03825 * 222.08722 * 17 16 15 19 19 C 1.36936 * 134.45523 * 204.64563 * 18 17 16 20 20 H 1.08003 * 119.99924 * 179.86786 * 19 18 17 21 21 C 1.38811 * 120.00422 * 359.86621 * 19 18 17 22 22 N 1.31619 * 119.99831 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00229 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47157 * 89.99976 * 23 21 19 25 25 H 1.48496 * 109.47115 * 210.00141 * 23 21 19 26 26 H 1.48498 * 109.47287 * 329.99879 * 23 21 19 27 27 C 1.47578 * 91.05117 * 24.55219 * 18 17 16 28 28 C 1.46771 * 111.29991 * 359.59343 * 15 13 12 29 29 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47070 * 300.00061 * 1 2 3 31 31 H 1.09001 * 109.46593 * 60.00058 * 1 2 3 32 32 H 1.09002 * 109.46881 * 299.99990 * 3 2 1 33 33 H 1.09000 * 109.46946 * 60.00038 * 3 2 1 34 34 H 1.08999 * 109.46757 * 180.02562 * 6 4 3 35 35 H 1.09007 * 109.46916 * 299.99713 * 6 4 3 36 36 H 1.08994 * 109.47430 * 60.00033 * 6 4 3 37 37 H 0.97001 * 119.99953 * 0.02562 * 9 7 4 38 38 H 1.09004 * 110.48396 * 261.59465 * 12 10 9 39 39 H 1.08997 * 110.48823 * 24.10170 * 12 10 9 40 40 H 1.09001 * 112.94360 * 170.30706 * 16 15 13 41 41 H 1.09006 * 113.77129 * 336.35164 * 17 16 15 42 42 H 1.08996 * 113.77080 * 107.74846 * 17 16 15 43 43 H 0.96994 * 120.00198 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.76588 * 221.15595 * 27 18 17 45 45 H 1.08993 * 113.77167 * 89.75585 * 27 18 17 46 46 H 1.08997 * 110.24274 * 258.01333 * 28 15 13 47 47 H 1.09005 * 110.24389 * 136.02155 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.1701 1.3951 -0.8410 6 6 4.3173 1.3918 1.3083 7 6 4.0820 3.4029 -0.1233 8 8 3.1955 4.2266 -0.2036 9 7 5.3710 3.7961 -0.1437 10 6 5.7012 5.2184 -0.2636 11 1 5.0062 5.7229 -0.9348 12 6 5.7237 5.9001 1.1241 13 6 6.8643 6.8897 1.0328 14 8 7.0439 7.8151 1.7960 15 7 7.6493 6.5947 -0.0176 16 6 8.8395 7.3584 -0.4004 17 6 9.6718 7.8507 0.7973 18 7 9.7994 9.1223 0.0548 19 6 10.7081 10.1467 0.0562 20 1 10.5717 10.9905 -0.6040 21 6 11.8045 10.1008 0.9062 22 7 11.9705 9.0728 1.7112 23 14 13.0437 11.4986 0.9086 24 1 12.6313 12.5241 1.9003 25 1 14.3840 10.9712 1.2701 26 1 13.1011 12.1116 -0.4427 27 6 8.5562 8.8436 -0.6900 28 6 7.1607 5.4094 -0.7321 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8031 2.2371 -0.8900 33 1 1.8031 2.2371 0.8900 34 1 5.4003 1.5150 1.3089 35 1 3.8894 1.9367 2.1499 36 1 4.0716 0.3336 1.3979 37 1 6.0801 3.1374 -0.0790 38 1 4.7829 6.4183 1.3099 39 1 5.9147 5.1659 1.9068 40 1 9.4304 6.8656 -1.1725 41 1 9.1018 7.9375 1.7224 42 1 10.6145 7.3189 0.9255 43 1 12.7365 9.0408 2.3054 44 1 8.6100 9.1031 -1.7474 45 1 7.6578 9.2226 -0.2029 46 1 7.7588 4.5371 -0.4686 47 1 7.1924 5.5782 -1.8085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108522084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:15 Heat of formation + Delta-G solvation = -7.391768 kcal Electronic energy + Delta-G solvation = -27364.503217 eV Core-core repulsion = 23482.714293 eV Total energy + Delta-G solvation = -3881.788924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.86961 -39.86459 -37.30464 -36.48584 -35.02501 -34.14317 -32.16298 -30.35906 -29.51811 -27.76296 -27.51704 -27.08044 -24.73775 -24.31194 -23.33284 -21.67177 -20.71215 -20.20488 -18.33063 -17.88478 -17.01001 -16.72572 -16.44173 -16.25684 -15.88635 -15.52553 -15.00020 -14.74988 -14.56294 -14.28710 -14.03942 -13.91905 -13.86720 -13.55766 -13.51496 -13.41846 -13.21967 -12.73364 -12.55753 -12.42974 -12.08761 -11.89980 -11.82141 -11.73205 -11.59800 -11.39873 -11.17235 -10.85163 -10.69582 -10.48780 -10.24961 -10.12092 -9.98086 -9.72029 -9.49157 -9.18424 -8.66482 -8.20145 -8.13477 -6.81412 -5.72147 -3.03981 1.14187 2.08341 2.22221 2.68087 2.91214 3.28539 3.42886 3.47895 3.48984 4.05658 4.14420 4.32051 4.37098 4.47531 4.51675 4.67530 4.68543 4.75713 4.79517 4.87059 5.04411 5.16217 5.23063 5.24201 5.31867 5.32938 5.35310 5.46389 5.53863 5.62058 5.65010 5.68298 5.72734 5.84032 6.07766 6.28939 6.51858 6.57761 6.86657 7.04998 7.28861 7.47546 7.58368 7.62483 7.79662 8.01380 8.53714 9.08712 9.74884 10.63887 11.45208 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.001786 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.321098 B =15671.607956 C =15781.739910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.261 6.261 3 C -0.067 4.067 4 C -0.094 4.094 5 H 0.108 0.892 6 C -0.148 4.148 7 C 0.526 3.474 8 O -0.533 6.533 9 N -0.717 5.717 10 C 0.135 3.865 11 H 0.111 0.889 12 C -0.167 4.167 13 C 0.515 3.485 14 O -0.507 6.507 15 N -0.606 5.606 16 C 0.098 3.902 17 C 0.153 3.847 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.111 3.889 28 C 0.099 3.901 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.404 0.596 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.040 0.960 46 H 0.073 0.927 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.862 -22.739 -5.807 30.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.035 6.035 3 C -0.216 4.216 4 C -0.116 4.116 5 H 0.126 0.874 6 C -0.206 4.206 7 C 0.310 3.690 8 O -0.409 6.409 9 N -0.370 5.370 10 C 0.029 3.971 11 H 0.128 0.872 12 C -0.208 4.208 13 C 0.301 3.699 14 O -0.381 6.381 15 N -0.341 5.341 16 C -0.004 4.004 17 C 0.027 3.973 18 N -0.331 5.331 19 C -0.348 4.348 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.016 4.016 28 C -0.026 4.026 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.240 0.760 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.372 -22.292 -5.381 30.019 hybrid contribution 0.116 1.433 0.089 1.440 sum -19.256 -20.859 -5.292 28.877 Atomic orbital electron populations 1.23394 0.93885 1.06546 1.05181 1.86741 1.07769 1.10914 1.98095 1.23221 0.97693 0.94029 1.06607 1.21040 0.95126 0.93377 1.02079 0.87373 1.21878 1.01011 1.02671 0.95033 1.20461 0.82455 0.90580 0.75500 1.90738 1.46902 1.54556 1.48731 1.45915 1.07801 1.08060 1.75183 1.21814 0.96656 0.81485 0.97104 0.87158 1.22822 0.99990 0.99544 0.98457 1.20593 0.83485 0.85138 0.80671 1.90795 1.73075 1.30749 1.43476 1.48502 1.27923 1.28554 1.29145 1.24090 0.84406 0.90558 1.01374 1.22784 0.96299 0.85530 0.92660 1.45704 1.21638 1.21555 1.44201 1.18996 0.99679 0.97655 1.18467 0.90181 1.24796 0.98863 0.98323 0.98473 1.69826 1.30350 1.29946 1.26551 0.86097 0.80584 0.81307 0.77635 1.21605 1.21642 1.20613 1.22926 0.91297 0.91454 0.95911 1.22191 0.92563 0.89669 0.98136 0.88006 0.90332 0.90377 0.89058 0.89217 0.91582 0.91652 0.90195 0.76004 0.87881 0.87823 0.87611 0.92619 0.91150 0.93667 0.93923 0.94221 0.90845 0.89620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.76 101.05 1.09 0.53 16 2 S -0.26 -1.72 21.19 -107.50 -2.28 -4.00 16 3 C -0.07 -0.45 4.73 37.16 0.18 -0.28 16 4 C -0.09 -0.55 2.72 -91.77 -0.25 -0.80 16 5 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 6 C -0.15 -0.74 8.92 37.16 0.33 -0.41 16 7 C 0.53 4.33 7.15 -10.98 -0.08 4.25 16 8 O -0.53 -6.49 15.66 5.56 0.09 -6.41 16 9 N -0.72 -4.80 5.08 -52.23 -0.27 -5.06 16 10 C 0.14 1.23 3.43 -66.30 -0.23 1.00 16 11 H 0.11 1.10 7.73 -51.93 -0.40 0.70 16 12 C -0.17 -1.96 6.59 -26.74 -0.18 -2.14 16 13 C 0.52 8.67 7.42 -10.86 -0.08 8.59 16 14 O -0.51 -11.32 14.61 5.56 0.08 -11.24 16 15 N -0.61 -9.14 3.15 -166.64 -0.53 -9.67 16 16 C 0.10 1.85 4.81 -70.15 -0.34 1.52 16 17 C 0.15 3.81 6.90 -2.84 -0.02 3.79 16 18 N -0.60 -16.33 3.70 -177.90 -0.66 -16.99 16 19 C -0.22 -6.43 10.70 -15.06 -0.16 -6.59 16 20 H 0.08 2.24 7.83 -52.48 -0.41 1.83 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -28.16 11.39 55.49 0.63 -27.53 16 23 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.11 2.43 8.44 -2.97 -0.03 2.41 16 28 C 0.10 0.94 7.07 -3.12 -0.02 0.91 16 29 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.08 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 32 H 0.09 0.68 7.96 -51.92 -0.41 0.27 16 33 H 0.09 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.07 0.24 7.56 -51.93 -0.39 -0.15 16 35 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 36 H 0.08 0.41 7.13 -51.93 -0.37 0.04 16 37 H 0.40 1.62 7.78 -40.82 -0.32 1.31 16 38 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 40 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 41 H 0.06 1.53 5.72 -51.93 -0.30 1.24 16 42 H 0.07 1.89 7.17 -51.93 -0.37 1.51 16 43 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.93 7.25 -51.93 -0.38 0.55 16 46 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16 47 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -37.12 392.48 -9.45 -46.57 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -7.54 Total: -1.75 kcal Atomic # 6 Polarization: 12.33 SS G_CDS: 0.12 Total: 12.45 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: -0.82 Total: -59.25 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.17 Total: -17.64 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.28 Total: -4.00 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.12 -9.45 -46.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108522084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.179 kcal (2) G-P(sol) polarization free energy of solvation -37.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds