Wall clock time and date at job start Wed Apr 1 2020 00:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00088 * 2 1 4 4 C 1.53006 * 109.47199 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.46705 * 55.00284 * 4 3 2 6 6 C 1.52998 * 109.47022 * 295.00143 * 4 3 2 7 7 C 1.50702 * 109.46985 * 174.99736 * 4 3 2 8 8 O 1.21277 * 120.00085 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99898 * 179.97438 * 7 4 3 10 10 C 1.46499 * 119.99928 * 180.02562 * 9 7 4 11 11 H 1.09001 * 110.85882 * 322.66302 * 10 9 7 12 12 C 1.54626 * 110.96948 * 86.45638 * 10 9 7 13 13 C 1.51285 * 104.19600 * 142.91740 * 12 10 9 14 14 O 1.21280 * 124.94216 * 163.71155 * 13 12 10 15 15 N 1.34414 * 110.11441 * 343.74503 * 13 12 10 16 16 C 1.46500 * 124.35040 * 179.57471 * 15 13 12 17 17 C 1.53939 * 113.74151 * 38.71374 * 16 15 13 18 18 N 1.47810 * 86.03825 * 222.08722 * 17 16 15 19 19 C 1.36936 * 134.45523 * 204.64563 * 18 17 16 20 20 H 1.08003 * 119.99924 * 179.86786 * 19 18 17 21 21 C 1.38811 * 120.00422 * 359.86621 * 19 18 17 22 22 N 1.31619 * 119.99831 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00229 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47157 * 89.99976 * 23 21 19 25 25 H 1.48496 * 109.47115 * 210.00141 * 23 21 19 26 26 H 1.48498 * 109.47287 * 329.99879 * 23 21 19 27 27 C 1.47578 * 91.05117 * 24.55219 * 18 17 16 28 28 C 1.46771 * 111.29991 * 359.59343 * 15 13 12 29 29 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47070 * 300.00061 * 1 2 3 31 31 H 1.09001 * 109.46593 * 60.00058 * 1 2 3 32 32 H 1.09002 * 109.46881 * 299.99990 * 3 2 1 33 33 H 1.09000 * 109.46946 * 60.00038 * 3 2 1 34 34 H 1.08999 * 109.46757 * 180.02562 * 6 4 3 35 35 H 1.09007 * 109.46916 * 299.99713 * 6 4 3 36 36 H 1.08994 * 109.47430 * 60.00033 * 6 4 3 37 37 H 0.97001 * 119.99953 * 0.02562 * 9 7 4 38 38 H 1.09004 * 110.48396 * 261.59465 * 12 10 9 39 39 H 1.08997 * 110.48823 * 24.10170 * 12 10 9 40 40 H 1.09001 * 112.94360 * 170.30706 * 16 15 13 41 41 H 1.09006 * 113.77129 * 336.35164 * 17 16 15 42 42 H 1.08996 * 113.77080 * 107.74846 * 17 16 15 43 43 H 0.96994 * 120.00198 * 180.02562 * 22 21 19 44 44 H 1.09004 * 113.76588 * 221.15595 * 27 18 17 45 45 H 1.08993 * 113.77167 * 89.75585 * 27 18 17 46 46 H 1.08997 * 110.24274 * 258.01333 * 28 15 13 47 47 H 1.09005 * 110.24389 * 136.02155 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 1 4.1701 1.3951 -0.8410 6 6 4.3173 1.3918 1.3083 7 6 4.0820 3.4029 -0.1233 8 8 3.1955 4.2266 -0.2036 9 7 5.3710 3.7961 -0.1437 10 6 5.7012 5.2184 -0.2636 11 1 5.0062 5.7229 -0.9348 12 6 5.7237 5.9001 1.1241 13 6 6.8643 6.8897 1.0328 14 8 7.0439 7.8151 1.7960 15 7 7.6493 6.5947 -0.0176 16 6 8.8395 7.3584 -0.4004 17 6 9.6718 7.8507 0.7973 18 7 9.7994 9.1223 0.0548 19 6 10.7081 10.1467 0.0562 20 1 10.5717 10.9905 -0.6040 21 6 11.8045 10.1008 0.9062 22 7 11.9705 9.0728 1.7112 23 14 13.0437 11.4986 0.9086 24 1 12.6313 12.5241 1.9003 25 1 14.3840 10.9712 1.2701 26 1 13.1011 12.1116 -0.4427 27 6 8.5562 8.8436 -0.6900 28 6 7.1607 5.4094 -0.7321 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.8031 2.2371 -0.8900 33 1 1.8031 2.2371 0.8900 34 1 5.4003 1.5150 1.3089 35 1 3.8894 1.9367 2.1499 36 1 4.0716 0.3336 1.3979 37 1 6.0801 3.1374 -0.0790 38 1 4.7829 6.4183 1.3099 39 1 5.9147 5.1659 1.9068 40 1 9.4304 6.8656 -1.1725 41 1 9.1018 7.9375 1.7224 42 1 10.6145 7.3189 0.9255 43 1 12.7365 9.0408 2.3054 44 1 8.6100 9.1031 -1.7474 45 1 7.6578 9.2226 -0.2029 46 1 7.7588 4.5371 -0.4686 47 1 7.1924 5.5782 -1.8085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108522084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:14 Heat of formation + Delta-G solvation = -34.120331 kcal Electronic energy + Delta-G solvation = -27365.662255 eV Core-core repulsion = 23482.714293 eV Total energy + Delta-G solvation = -3882.947962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93865 -40.82074 -38.97139 -37.70403 -35.60377 -35.22579 -34.12331 -31.61570 -29.89842 -29.19588 -28.52803 -27.93832 -26.62100 -25.41325 -24.70147 -22.53880 -22.13189 -21.10081 -19.76157 -18.81000 -18.48790 -17.86017 -17.59721 -17.12839 -16.87982 -16.50229 -16.34744 -16.07576 -15.64127 -15.39349 -15.15665 -14.96229 -14.65055 -14.60473 -14.47556 -14.20926 -14.03584 -13.82348 -13.62516 -13.42206 -13.28431 -13.23971 -12.97695 -12.83766 -12.76370 -12.56875 -12.32593 -12.25316 -12.15942 -12.03288 -11.90846 -11.51967 -11.12615 -11.00244 -10.81603 -10.64985 -10.12678 -9.58224 -8.94919 -8.63187 -7.93216 -5.27787 0.67282 1.42917 1.46549 1.53913 1.55151 1.60838 1.63920 1.85860 2.20773 2.48378 3.24925 3.32053 3.46456 3.48857 3.56730 3.76720 3.79306 3.85931 3.97204 4.02563 4.24532 4.32541 4.33922 4.37732 4.51883 4.55663 4.57718 4.64924 4.70761 4.75897 4.82482 4.89073 4.91283 4.91546 4.93512 5.03061 5.20278 5.21749 5.34786 5.40274 5.47144 5.83719 5.88920 6.24235 6.49852 6.87951 7.19730 7.22113 7.56671 8.52182 9.24094 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.043045 B = 0.001786 C = 0.001774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.321098 B =15671.607956 C =15781.739910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.279 6.279 3 C -0.063 4.063 4 C -0.085 4.085 5 H 0.128 0.872 6 C -0.145 4.145 7 C 0.528 3.472 8 O -0.575 6.575 9 N -0.700 5.700 10 C 0.151 3.849 11 H 0.106 0.894 12 C -0.154 4.154 13 C 0.503 3.497 14 O -0.574 6.574 15 N -0.605 5.605 16 C 0.137 3.863 17 C 0.148 3.852 18 N -0.635 5.635 19 C -0.239 4.239 20 H 0.085 0.915 21 C -0.068 4.068 22 N -0.954 5.954 23 Si 0.985 3.015 24 H -0.291 1.291 25 H -0.289 1.289 26 H -0.262 1.262 27 C 0.111 3.889 28 C 0.099 3.901 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.422 0.578 38 H 0.096 0.904 39 H 0.120 0.880 40 H 0.140 0.860 41 H 0.021 0.979 42 H 0.044 0.956 43 H 0.249 0.751 44 H 0.069 0.931 45 H 0.021 0.979 46 H 0.106 0.894 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.102 -24.809 -7.885 32.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.054 6.054 3 C -0.211 4.211 4 C -0.107 4.107 5 H 0.146 0.854 6 C -0.203 4.203 7 C 0.313 3.687 8 O -0.454 6.454 9 N -0.354 5.354 10 C 0.044 3.956 11 H 0.124 0.876 12 C -0.195 4.195 13 C 0.292 3.708 14 O -0.453 6.453 15 N -0.338 5.338 16 C 0.034 3.966 17 C 0.022 3.978 18 N -0.361 5.361 19 C -0.367 4.367 20 H 0.103 0.897 21 C -0.261 4.261 22 N -0.602 5.602 23 Si 0.812 3.188 24 H -0.219 1.219 25 H -0.215 1.215 26 H -0.187 1.187 27 C -0.015 4.015 28 C -0.023 4.023 29 H 0.132 0.868 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.261 0.739 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.158 0.842 41 H 0.039 0.961 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.039 0.961 46 H 0.124 0.876 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -19.634 -24.440 -7.516 32.238 hybrid contribution 0.066 2.037 0.756 2.174 sum -19.567 -22.403 -6.760 30.504 Atomic orbital electron populations 1.23467 0.92172 1.07463 1.05612 1.86749 1.09809 1.10682 1.98111 1.23150 0.98439 0.93955 1.05586 1.21035 0.94579 0.91761 1.03375 0.85419 1.21873 1.02070 1.02399 0.93946 1.20854 0.82235 0.91181 0.74385 1.90735 1.48191 1.55795 1.50647 1.45716 1.07996 1.07309 1.74350 1.21548 0.96582 0.82552 0.94884 0.87569 1.22744 0.97239 0.98595 1.00942 1.21476 0.84478 0.84884 0.79989 1.90761 1.74837 1.33795 1.45893 1.48451 1.26416 1.29705 1.29212 1.23393 0.84850 0.90046 0.98354 1.22589 0.95736 0.85689 0.93754 1.46143 1.23011 1.21803 1.45189 1.19448 1.00302 0.98530 1.18415 0.89695 1.25722 1.01028 1.00991 0.98360 1.70034 1.30867 1.31921 1.27404 0.84996 0.77681 0.77951 0.78182 1.21880 1.21526 1.18688 1.23015 0.88605 0.93561 0.96361 1.22546 0.92568 0.88125 0.99046 0.86839 0.89975 0.89923 0.90016 0.90322 0.89688 0.92715 0.90125 0.73891 0.88546 0.86234 0.84208 0.96115 0.93790 0.94204 0.91284 0.96140 0.87555 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.93 10.76 113.37 1.22 0.29 16 2 S -0.28 -3.28 21.19 -56.49 -1.20 -4.48 16 3 C -0.06 -0.78 4.73 71.98 0.34 -0.44 16 4 C -0.09 -0.80 2.72 -11.54 -0.03 -0.83 16 5 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 6 C -0.15 -1.08 8.92 71.98 0.64 -0.44 16 7 C 0.53 7.44 7.15 87.66 0.63 8.06 16 8 O -0.57 -13.28 15.66 -3.02 -0.05 -13.33 16 9 N -0.70 -6.86 5.08 -437.55 -2.22 -9.08 16 10 C 0.15 2.28 3.43 46.05 0.16 2.44 16 11 H 0.11 1.83 7.73 -2.39 -0.02 1.81 16 12 C -0.15 -3.43 6.59 30.59 0.20 -3.23 16 13 C 0.50 16.97 7.42 87.90 0.65 17.62 16 14 O -0.57 -27.00 14.61 -3.03 -0.04 -27.04 16 15 N -0.60 -17.16 3.15 -799.73 -2.52 -19.69 16 16 C 0.14 5.01 4.81 46.75 0.22 5.24 16 17 C 0.15 7.63 6.90 86.44 0.60 8.23 16 18 N -0.63 -34.96 3.70 -716.74 -2.65 -37.62 16 19 C -0.24 -14.15 10.70 84.03 0.90 -13.25 16 20 H 0.09 4.78 7.83 -2.91 -0.02 4.76 16 21 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 22 N -0.95 -60.24 11.39 21.65 0.25 -60.00 16 23 Si 0.98 47.39 29.55 68.60 2.03 49.41 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 27 C 0.11 4.81 8.44 86.49 0.73 5.54 16 28 C 0.10 1.46 7.07 86.83 0.61 2.07 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 1.16 7.96 -2.39 -0.02 1.14 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.08 0.31 7.56 -2.39 -0.02 0.29 16 35 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.08 0.64 7.13 -2.39 -0.02 0.62 16 37 H 0.42 1.37 7.78 -92.71 -0.72 0.65 16 38 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.12 2.30 8.08 -2.39 -0.02 2.28 16 40 H 0.14 4.24 8.14 -2.39 -0.02 4.22 16 41 H 0.02 1.22 5.72 -2.38 -0.01 1.21 16 42 H 0.04 2.45 7.17 -2.39 -0.02 2.43 16 43 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 44 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 45 H 0.02 0.99 7.25 -2.39 -0.02 0.97 16 46 H 0.11 0.99 7.77 -2.39 -0.02 0.97 16 47 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -86.71 392.48 1.18 -85.53 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: 0.25 Total: 8.58 kcal Atomic # 6 Polarization: 20.36 SS G_CDS: 7.34 Total: 27.70 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -7.15 Total: -126.38 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -0.09 Total: -40.37 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -1.20 Total: -4.48 kcal Total: -86.71 1.18 -85.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108522084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.408 kcal (2) G-P(sol) polarization free energy of solvation -86.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds