Wall clock time and date at job start Wed Apr 1 2020 00:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81406 * 102.99580 * 2 1 4 4 C 1.52996 * 109.46782 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47452 * 54.99941 * 4 3 2 6 6 C 1.53000 * 109.47290 * 295.00128 * 4 3 2 7 7 C 1.50696 * 109.47257 * 175.00233 * 4 3 2 8 8 O 1.21280 * 119.99737 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00318 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00013 * 180.27576 * 9 7 4 11 11 H 1.09006 * 110.86027 * 30.92879 * 10 9 7 12 12 C 1.54635 * 110.97035 * 267.09838 * 10 9 7 13 13 C 1.51283 * 104.19652 * 217.08574 * 12 10 9 14 14 O 1.21275 * 124.93940 * 196.25551 * 13 12 10 15 15 N 1.34416 * 110.11643 * 16.24877 * 13 12 10 16 16 C 1.46498 * 124.35118 * 180.38913 * 15 13 12 17 17 C 1.53940 * 113.74211 * 38.76373 * 16 15 13 18 18 N 1.47814 * 86.03845 * 222.08684 * 17 16 15 19 19 C 1.36937 * 134.45450 * 204.64217 * 18 17 16 20 20 H 1.08001 * 119.99670 * 173.34573 * 19 18 17 21 21 C 1.38810 * 120.00025 * 353.34918 * 19 18 17 22 22 N 1.31614 * 120.00227 * 5.06009 * 21 19 18 23 23 Si 1.86805 * 119.99545 * 185.06213 * 21 19 18 24 24 H 1.48499 * 109.47226 * 94.99202 * 23 21 19 25 25 H 1.48504 * 109.46909 * 214.98903 * 23 21 19 26 26 H 1.48497 * 109.47224 * 334.98680 * 23 21 19 27 27 C 1.47576 * 91.04978 * 24.54809 * 18 17 16 28 28 C 1.46763 * 111.30076 * 0.40803 * 15 13 12 29 29 H 1.09009 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47207 * 299.99325 * 1 2 3 31 31 H 1.08989 * 109.47681 * 60.00067 * 1 2 3 32 32 H 1.08999 * 109.46764 * 60.00449 * 3 2 1 33 33 H 1.08997 * 109.47005 * 300.00367 * 3 2 1 34 34 H 1.08998 * 109.47153 * 300.00201 * 6 4 3 35 35 H 1.09001 * 109.47234 * 59.99921 * 6 4 3 36 36 H 1.09005 * 109.47464 * 179.97438 * 6 4 3 37 37 H 0.97002 * 120.00160 * 359.97438 * 9 7 4 38 38 H 1.08994 * 110.48165 * 335.76154 * 12 10 9 39 39 H 1.08998 * 110.48371 * 98.40491 * 12 10 9 40 40 H 1.08998 * 112.94781 * 170.35642 * 16 15 13 41 41 H 1.09007 * 113.77006 * 336.35037 * 17 16 15 42 42 H 1.09003 * 113.77082 * 107.75136 * 17 16 15 43 43 H 0.97003 * 119.99875 * 179.97438 * 22 21 19 44 44 H 1.08999 * 113.77161 * 221.15314 * 27 18 17 45 45 H 1.09006 * 113.76750 * 89.75315 * 27 18 17 46 46 H 1.09002 * 110.24966 * 223.98078 * 28 15 13 47 47 H 1.09008 * 110.24274 * 101.98548 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9401 -0.0006 5 1 4.1694 1.3954 -0.8427 6 6 4.3183 1.3916 1.3064 7 6 4.0818 3.4030 -0.1244 8 8 3.1951 4.2266 -0.2047 9 7 5.3707 3.7962 -0.1469 10 6 5.7007 5.2189 -0.2612 11 1 4.9329 5.8343 0.2078 12 6 5.9074 5.6221 -1.7396 13 6 7.0395 6.6247 -1.6960 14 8 7.3262 7.3881 -2.5936 15 7 7.6813 6.5462 -0.5175 16 6 8.8232 7.3831 -0.1409 17 6 8.7051 8.8428 -0.6152 18 7 10.1350 8.7345 -0.9734 19 6 11.1571 9.6335 -1.1227 20 1 12.1642 9.2827 -1.2930 21 6 10.8986 10.9957 -1.0552 22 7 9.6917 11.4222 -0.7492 23 14 12.2640 12.2234 -1.3988 24 1 12.2060 12.6427 -2.8222 25 1 12.0921 13.4121 -0.5253 26 1 13.5790 11.5917 -1.1219 27 6 10.0194 7.2690 -1.1032 28 6 7.0913 5.5142 0.3432 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 1.8031 2.2371 0.8900 33 1 1.8030 2.2372 -0.8899 34 1 3.8912 1.9362 2.1484 35 1 4.0727 0.3334 1.3960 36 1 5.4014 1.5141 1.3057 37 1 6.0799 3.1374 -0.0831 38 1 6.1893 4.7542 -2.3358 39 1 5.0043 6.0835 -2.1390 40 1 9.0945 7.2838 0.9101 41 1 8.0458 8.9740 -1.4733 42 1 8.5049 9.5512 0.1888 43 1 9.5112 12.3741 -0.7017 44 1 10.8666 6.7230 -0.6882 45 1 9.7471 6.9368 -2.1050 46 1 6.9883 5.8867 1.3624 47 1 7.7071 4.6148 0.3300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108522086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:18 Heat of formation + Delta-G solvation = -7.862814 kcal Electronic energy + Delta-G solvation = -27323.983594 eV Core-core repulsion = 23442.174244 eV Total energy + Delta-G solvation = -3881.809350 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.86373 -39.87203 -37.30650 -36.48358 -35.03530 -34.14454 -32.16928 -30.36496 -29.51716 -27.72337 -27.54999 -27.08674 -24.74678 -24.31779 -23.33665 -21.64049 -20.69783 -20.26721 -18.36375 -17.84065 -17.01019 -16.75169 -16.48537 -16.20535 -15.89184 -15.44221 -15.10075 -14.68052 -14.59995 -14.27987 -14.13464 -13.89825 -13.78419 -13.57424 -13.52499 -13.38453 -13.20666 -12.76495 -12.54951 -12.46075 -12.10336 -11.90982 -11.83459 -11.72477 -11.56232 -11.44965 -11.19510 -10.84494 -10.70429 -10.48991 -10.20797 -10.16380 -9.96445 -9.72376 -9.49199 -9.18194 -8.65468 -8.20411 -8.13821 -6.80132 -5.73494 -3.04530 1.13961 2.08011 2.21779 2.68096 2.91273 3.28674 3.42885 3.48507 3.49637 4.04860 4.17507 4.28488 4.38110 4.47041 4.52005 4.67574 4.68486 4.75565 4.80136 4.86332 5.03609 5.14190 5.21964 5.24237 5.29981 5.31027 5.38908 5.45276 5.52530 5.61778 5.62516 5.69477 5.73156 5.81602 6.07804 6.28005 6.51275 6.57853 6.87065 7.04745 7.27568 7.47768 7.58701 7.63526 7.79506 8.00967 8.53808 9.08270 9.74704 10.64434 11.44417 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.043254 B = 0.001782 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.190602 B =15708.110612 C =15905.262831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.261 6.261 3 C -0.067 4.067 4 C -0.094 4.094 5 H 0.108 0.892 6 C -0.147 4.147 7 C 0.526 3.474 8 O -0.533 6.533 9 N -0.717 5.717 10 C 0.133 3.867 11 H 0.114 0.886 12 C -0.167 4.167 13 C 0.515 3.485 14 O -0.506 6.506 15 N -0.606 5.606 16 C 0.098 3.902 17 C 0.156 3.844 18 N -0.604 5.604 19 C -0.223 4.223 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.916 5.916 23 Si 0.911 3.089 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.112 3.888 28 C 0.099 3.901 29 H 0.101 0.899 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.404 0.596 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.254 0.746 44 H 0.042 0.958 45 H 0.040 0.960 46 H 0.086 0.914 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.150 -26.367 6.034 31.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.036 6.036 3 C -0.216 4.216 4 C -0.117 4.117 5 H 0.126 0.874 6 C -0.205 4.205 7 C 0.310 3.690 8 O -0.409 6.409 9 N -0.369 5.369 10 C 0.028 3.972 11 H 0.132 0.868 12 C -0.209 4.209 13 C 0.301 3.699 14 O -0.380 6.380 15 N -0.341 5.341 16 C -0.005 4.005 17 C 0.030 3.970 18 N -0.331 5.331 19 C -0.351 4.351 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.741 3.259 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.205 1.205 27 C -0.016 4.016 28 C -0.026 4.026 29 H 0.120 0.880 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.239 0.761 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.104 0.896 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.763 -25.843 5.514 30.769 hybrid contribution 0.170 1.361 -0.266 1.397 sum -15.593 -24.482 5.248 29.497 Atomic orbital electron populations 1.23394 0.93855 1.06547 1.05198 1.86734 1.07805 1.10924 1.98098 1.23220 0.97675 0.94023 1.06634 1.21043 0.95153 0.93393 1.02081 0.87365 1.21870 1.00937 1.02659 0.95032 1.20464 0.82479 0.90598 0.75464 1.90744 1.46894 1.54507 1.48727 1.45897 1.07768 1.08048 1.75186 1.21843 0.97451 0.82317 0.95629 0.86771 1.22830 0.99907 1.00449 0.97688 1.20586 0.83335 0.83757 0.82227 1.90799 1.68293 1.39571 1.39363 1.48501 1.32817 1.36662 1.16143 1.24109 0.84232 0.93024 0.99138 1.22734 0.86580 0.89146 0.98550 1.45683 1.06292 1.00719 1.80393 1.18983 0.87045 0.85986 1.43075 0.90141 1.24839 0.96774 0.96689 1.01979 1.69842 1.19560 1.13603 1.53262 0.86118 0.80878 0.81017 0.77861 1.21597 1.21710 1.20544 1.22916 0.94104 0.88031 0.96515 1.22207 0.92227 0.92497 0.95661 0.88009 0.90344 0.90343 0.89218 0.89022 0.91673 0.90231 0.91616 0.76067 0.87880 0.87829 0.87638 0.92469 0.91545 0.93608 0.94022 0.94267 0.89616 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.76 101.05 1.09 0.53 16 2 S -0.26 -1.71 21.19 -107.50 -2.28 -3.99 16 3 C -0.07 -0.45 4.73 37.16 0.18 -0.28 16 4 C -0.09 -0.55 2.72 -91.78 -0.25 -0.80 16 5 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 6 C -0.15 -0.65 8.92 37.16 0.33 -0.32 16 7 C 0.53 4.33 7.15 -10.99 -0.08 4.25 16 8 O -0.53 -6.56 15.56 5.56 0.09 -6.48 16 9 N -0.72 -4.75 5.04 -52.22 -0.26 -5.02 16 10 C 0.13 1.23 3.53 -66.30 -0.23 1.00 16 11 H 0.11 1.21 7.54 -51.93 -0.39 0.81 16 12 C -0.17 -1.95 6.59 -26.74 -0.18 -2.13 16 13 C 0.52 8.66 7.41 -10.86 -0.08 8.58 16 14 O -0.51 -11.31 14.60 5.56 0.08 -11.23 16 15 N -0.61 -9.14 3.15 -166.64 -0.53 -9.67 16 16 C 0.10 1.84 4.81 -70.15 -0.34 1.50 16 17 C 0.16 3.90 6.81 -2.84 -0.02 3.88 16 18 N -0.60 -16.31 3.70 -177.88 -0.66 -16.97 16 19 C -0.22 -6.51 10.69 -15.06 -0.16 -6.68 16 20 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -28.26 11.51 55.49 0.64 -27.62 16 23 Si 0.91 22.77 29.56 -169.99 -5.02 17.75 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 C 0.11 2.41 8.43 -2.97 -0.03 2.39 16 28 C 0.10 0.94 7.08 -3.12 -0.02 0.92 16 29 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.09 0.71 7.95 -51.93 -0.41 0.29 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.37 7.13 -51.93 -0.37 0.00 16 36 H 0.06 0.19 7.57 -51.93 -0.39 -0.20 16 37 H 0.40 1.55 7.85 -40.82 -0.32 1.23 16 38 H 0.10 1.04 8.08 -51.93 -0.42 0.62 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.11 1.78 8.14 -51.93 -0.42 1.35 16 41 H 0.06 1.59 5.75 -51.93 -0.30 1.29 16 42 H 0.07 1.79 7.37 -51.93 -0.38 1.41 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.91 7.22 -51.93 -0.38 0.53 16 46 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.52 7.80 -51.92 -0.40 0.11 16 LS Contribution 392.59 15.07 5.92 5.92 Total: -1.00 -37.29 392.59 -9.45 -46.75 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -7.54 Total: -2.01 kcal Atomic # 6 Polarization: 12.46 SS G_CDS: 0.11 Total: 12.57 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: -0.81 Total: -59.28 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.17 Total: -17.71 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.75 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.28 Total: -3.99 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -37.29 -9.45 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108522086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.883 kcal (2) G-P(sol) polarization free energy of solvation -37.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds