Wall clock time and date at job start Wed Apr 1 2020 00:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81406 * 102.99580 * 2 1 4 4 C 1.52996 * 109.46782 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.47452 * 54.99941 * 4 3 2 6 6 C 1.53000 * 109.47290 * 295.00128 * 4 3 2 7 7 C 1.50696 * 109.47257 * 175.00233 * 4 3 2 8 8 O 1.21280 * 119.99737 * 359.97438 * 7 4 3 9 9 N 1.34777 * 120.00318 * 180.02562 * 7 4 3 10 10 C 1.46496 * 120.00013 * 180.27576 * 9 7 4 11 11 H 1.09006 * 110.86027 * 30.92879 * 10 9 7 12 12 C 1.54635 * 110.97035 * 267.09838 * 10 9 7 13 13 C 1.51283 * 104.19652 * 217.08574 * 12 10 9 14 14 O 1.21275 * 124.93940 * 196.25551 * 13 12 10 15 15 N 1.34416 * 110.11643 * 16.24877 * 13 12 10 16 16 C 1.46498 * 124.35118 * 180.38913 * 15 13 12 17 17 C 1.53940 * 113.74211 * 38.76373 * 16 15 13 18 18 N 1.47814 * 86.03845 * 222.08684 * 17 16 15 19 19 C 1.36937 * 134.45450 * 204.64217 * 18 17 16 20 20 H 1.08001 * 119.99670 * 173.34573 * 19 18 17 21 21 C 1.38810 * 120.00025 * 353.34918 * 19 18 17 22 22 N 1.31614 * 120.00227 * 5.06009 * 21 19 18 23 23 Si 1.86805 * 119.99545 * 185.06213 * 21 19 18 24 24 H 1.48499 * 109.47226 * 94.99202 * 23 21 19 25 25 H 1.48504 * 109.46909 * 214.98903 * 23 21 19 26 26 H 1.48497 * 109.47224 * 334.98680 * 23 21 19 27 27 C 1.47576 * 91.04978 * 24.54809 * 18 17 16 28 28 C 1.46763 * 111.30076 * 0.40803 * 15 13 12 29 29 H 1.09009 * 109.46991 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47207 * 299.99325 * 1 2 3 31 31 H 1.08989 * 109.47681 * 60.00067 * 1 2 3 32 32 H 1.08999 * 109.46764 * 60.00449 * 3 2 1 33 33 H 1.08997 * 109.47005 * 300.00367 * 3 2 1 34 34 H 1.08998 * 109.47153 * 300.00201 * 6 4 3 35 35 H 1.09001 * 109.47234 * 59.99921 * 6 4 3 36 36 H 1.09005 * 109.47464 * 179.97438 * 6 4 3 37 37 H 0.97002 * 120.00160 * 359.97438 * 9 7 4 38 38 H 1.08994 * 110.48165 * 335.76154 * 12 10 9 39 39 H 1.08998 * 110.48371 * 98.40491 * 12 10 9 40 40 H 1.08998 * 112.94781 * 170.35642 * 16 15 13 41 41 H 1.09007 * 113.77006 * 336.35037 * 17 16 15 42 42 H 1.09003 * 113.77082 * 107.75136 * 17 16 15 43 43 H 0.97003 * 119.99875 * 179.97438 * 22 21 19 44 44 H 1.08999 * 113.77161 * 221.15314 * 27 18 17 45 45 H 1.09006 * 113.76750 * 89.75315 * 27 18 17 46 46 H 1.09002 * 110.24966 * 223.98078 * 28 15 13 47 47 H 1.09008 * 110.24274 * 101.98548 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7422 1.9401 -0.0006 5 1 4.1694 1.3954 -0.8427 6 6 4.3183 1.3916 1.3064 7 6 4.0818 3.4030 -0.1244 8 8 3.1951 4.2266 -0.2047 9 7 5.3707 3.7962 -0.1469 10 6 5.7007 5.2189 -0.2612 11 1 4.9329 5.8343 0.2078 12 6 5.9074 5.6221 -1.7396 13 6 7.0395 6.6247 -1.6960 14 8 7.3262 7.3881 -2.5936 15 7 7.6813 6.5462 -0.5175 16 6 8.8232 7.3831 -0.1409 17 6 8.7051 8.8428 -0.6152 18 7 10.1350 8.7345 -0.9734 19 6 11.1571 9.6335 -1.1227 20 1 12.1642 9.2827 -1.2930 21 6 10.8986 10.9957 -1.0552 22 7 9.6917 11.4222 -0.7492 23 14 12.2640 12.2234 -1.3988 24 1 12.2060 12.6427 -2.8222 25 1 12.0921 13.4121 -0.5253 26 1 13.5790 11.5917 -1.1219 27 6 10.0194 7.2690 -1.1032 28 6 7.0913 5.5142 0.3432 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5137 -0.8899 32 1 1.8031 2.2371 0.8900 33 1 1.8030 2.2372 -0.8899 34 1 3.8912 1.9362 2.1484 35 1 4.0727 0.3334 1.3960 36 1 5.4014 1.5141 1.3057 37 1 6.0799 3.1374 -0.0831 38 1 6.1893 4.7542 -2.3358 39 1 5.0043 6.0835 -2.1390 40 1 9.0945 7.2838 0.9101 41 1 8.0458 8.9740 -1.4733 42 1 8.5049 9.5512 0.1888 43 1 9.5112 12.3741 -0.7017 44 1 10.8666 6.7230 -0.6882 45 1 9.7471 6.9368 -2.1050 46 1 6.9883 5.8867 1.3624 47 1 7.7071 4.6148 0.3300 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108522086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:17 Heat of formation + Delta-G solvation = -34.900208 kcal Electronic energy + Delta-G solvation = -27325.156024 eV Core-core repulsion = 23442.174244 eV Total energy + Delta-G solvation = -3882.981780 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.93329 -40.82663 -38.97258 -37.70347 -35.60381 -35.22768 -34.13247 -31.61841 -29.89760 -29.19813 -28.49732 -27.94361 -26.62636 -25.40582 -24.70983 -22.50310 -22.13956 -21.13736 -19.80188 -18.78547 -18.44658 -17.94151 -17.50170 -17.12420 -16.92851 -16.47730 -16.45284 -15.94345 -15.70942 -15.36190 -15.18124 -14.87079 -14.68334 -14.64693 -14.45665 -14.19936 -14.03616 -13.82122 -13.57218 -13.44610 -13.30597 -13.22418 -12.95261 -12.84267 -12.81169 -12.58980 -12.34958 -12.24001 -12.15415 -12.01101 -11.89222 -11.51878 -11.13447 -11.00804 -10.81741 -10.65323 -10.11740 -9.58379 -8.94079 -8.63321 -7.95225 -5.28705 0.67100 1.41983 1.46009 1.53437 1.54615 1.60574 1.64058 1.86914 2.20274 2.47923 3.23447 3.33274 3.46935 3.48311 3.56818 3.78475 3.80489 3.84800 3.96717 4.02825 4.24762 4.32556 4.33692 4.37545 4.51057 4.56843 4.60088 4.64606 4.71776 4.76187 4.83302 4.88846 4.91226 4.93278 4.96011 5.04981 5.17406 5.23606 5.37106 5.40420 5.46499 5.83569 5.87993 6.24543 6.50108 6.86666 7.20168 7.22506 7.56367 8.52451 9.23011 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.043254 B = 0.001782 C = 0.001760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.190602 B =15708.110612 C =15905.262831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.278 6.278 3 C -0.063 4.063 4 C -0.086 4.086 5 H 0.124 0.876 6 C -0.143 4.143 7 C 0.527 3.473 8 O -0.577 6.577 9 N -0.698 5.698 10 C 0.148 3.852 11 H 0.102 0.898 12 C -0.154 4.154 13 C 0.503 3.497 14 O -0.573 6.573 15 N -0.605 5.605 16 C 0.136 3.864 17 C 0.149 3.851 18 N -0.635 5.635 19 C -0.238 4.238 20 H 0.089 0.911 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.982 3.018 24 H -0.293 1.293 25 H -0.291 1.291 26 H -0.259 1.259 27 C 0.114 3.886 28 C 0.100 3.900 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.423 0.577 38 H 0.126 0.874 39 H 0.094 0.906 40 H 0.140 0.860 41 H 0.020 0.980 42 H 0.037 0.963 43 H 0.248 0.752 44 H 0.072 0.928 45 H 0.023 0.977 46 H 0.107 0.893 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.299 -29.521 7.500 34.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.052 6.052 3 C -0.212 4.212 4 C -0.108 4.108 5 H 0.142 0.858 6 C -0.201 4.201 7 C 0.313 3.687 8 O -0.456 6.456 9 N -0.351 5.351 10 C 0.041 3.959 11 H 0.120 0.880 12 C -0.195 4.195 13 C 0.291 3.709 14 O -0.452 6.452 15 N -0.338 5.338 16 C 0.032 3.968 17 C 0.023 3.977 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.107 0.893 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.810 3.190 24 H -0.220 1.220 25 H -0.217 1.217 26 H -0.184 1.184 27 C -0.012 4.012 28 C -0.022 4.022 29 H 0.132 0.868 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.262 0.738 38 H 0.144 0.856 39 H 0.113 0.887 40 H 0.157 0.843 41 H 0.038 0.962 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.090 0.910 45 H 0.041 0.959 46 H 0.125 0.875 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.897 -29.110 7.024 33.446 hybrid contribution -0.184 2.253 -0.756 2.384 sum -15.081 -26.857 6.268 31.433 Atomic orbital electron populations 1.23470 0.92210 1.07468 1.05599 1.86731 1.09773 1.10632 1.98110 1.23153 0.98525 0.93975 1.05544 1.21044 0.94540 0.91637 1.03620 0.85788 1.21867 1.02214 1.02319 0.93676 1.20887 0.82258 0.91230 0.74306 1.90741 1.48269 1.55827 1.50735 1.45669 1.07965 1.07212 1.74293 1.21541 0.97246 0.83666 0.93428 0.87965 1.22755 0.97187 0.99514 1.00038 1.21483 0.84130 0.83568 0.81684 1.90766 1.70271 1.42417 1.41793 1.48454 1.31680 1.37049 1.16628 1.23415 0.84253 0.89229 0.99865 1.22534 0.85545 0.93139 0.96496 1.46114 1.06414 1.02979 1.80663 1.19463 0.88203 0.86947 1.42008 0.89336 1.25773 0.99305 0.98737 1.02401 1.70056 1.21854 1.13400 1.54898 0.85005 0.78750 0.78262 0.76995 1.22021 1.21729 1.18362 1.23001 0.96382 0.85269 0.96547 1.22555 0.92172 0.92252 0.95265 0.86818 0.89836 0.90105 0.90043 0.90413 0.92355 0.90250 0.89353 0.73799 0.85597 0.88718 0.84273 0.96176 0.94484 0.94265 0.91033 0.95924 0.87497 0.86917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.94 10.76 113.37 1.22 0.28 16 2 S -0.28 -3.25 21.19 -56.49 -1.20 -4.45 16 3 C -0.06 -0.79 4.73 71.98 0.34 -0.45 16 4 C -0.09 -0.79 2.72 -11.54 -0.03 -0.82 16 5 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 6 C -0.14 -0.83 8.92 71.98 0.64 -0.18 16 7 C 0.53 7.47 7.15 87.66 0.63 8.09 16 8 O -0.58 -13.68 15.56 -3.03 -0.05 -13.72 16 9 N -0.70 -6.68 5.04 -437.53 -2.21 -8.89 16 10 C 0.15 2.31 3.53 46.05 0.16 2.47 16 11 H 0.10 1.97 7.54 -2.38 -0.02 1.95 16 12 C -0.15 -3.37 6.59 30.59 0.20 -3.17 16 13 C 0.50 16.90 7.41 87.90 0.65 17.55 16 14 O -0.57 -26.97 14.60 -3.02 -0.04 -27.01 16 15 N -0.60 -17.14 3.15 -799.72 -2.52 -19.66 16 16 C 0.14 4.96 4.81 46.75 0.22 5.18 16 17 C 0.15 7.76 6.81 86.44 0.59 8.35 16 18 N -0.64 -34.85 3.70 -716.67 -2.65 -37.50 16 19 C -0.24 -14.06 10.69 84.03 0.90 -13.16 16 20 H 0.09 4.92 7.83 -2.91 -0.02 4.90 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.69 16 22 N -0.95 -61.15 11.51 21.65 0.25 -60.90 16 23 Si 0.98 47.63 29.56 68.60 2.03 49.66 16 24 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.11 4.84 8.43 86.49 0.73 5.57 16 28 C 0.10 1.47 7.08 86.83 0.61 2.09 16 29 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 0.61 8.14 -2.40 -0.02 0.59 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 1.17 7.95 -2.39 -0.02 1.16 16 34 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.08 0.52 7.13 -2.39 -0.02 0.50 16 36 H 0.09 0.11 7.57 -2.38 -0.02 0.09 16 37 H 0.42 1.06 7.85 -92.71 -0.73 0.33 16 38 H 0.13 2.20 8.08 -2.39 -0.02 2.19 16 39 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.14 4.21 8.14 -2.39 -0.02 4.19 16 41 H 0.02 1.21 5.75 -2.38 -0.01 1.20 16 42 H 0.04 2.10 7.37 -2.39 -0.02 2.08 16 43 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 44 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 45 H 0.02 1.06 7.22 -2.38 -0.02 1.04 16 46 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.11 0.89 7.80 -2.38 -0.02 0.87 16 Total: -1.00 -87.94 392.59 1.19 -86.75 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 0.25 Total: 7.62 kcal Atomic # 6 Polarization: 20.77 SS G_CDS: 7.34 Total: 28.11 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -7.13 Total: -126.95 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.09 Total: -40.73 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -1.20 Total: -4.45 kcal Total: -87.94 1.19 -86.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108522086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.848 kcal (2) G-P(sol) polarization free energy of solvation -87.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds