Wall clock time and date at job start Wed Apr 1 2020 00:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81402 * 103.00174 * 2 1 4 4 H 1.09002 * 109.46741 * 55.00093 * 3 2 1 5 5 C 1.52999 * 109.46814 * 294.99837 * 3 2 1 6 6 C 1.53001 * 109.47028 * 174.99867 * 3 2 1 7 7 C 1.50701 * 109.46844 * 294.99886 * 6 3 2 8 8 O 1.21277 * 120.00509 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99633 * 180.02562 * 7 6 3 10 10 C 1.46495 * 120.00062 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.85212 * 322.66094 * 10 9 7 12 12 C 1.54623 * 110.97377 * 86.45206 * 10 9 7 13 13 C 1.51282 * 104.31101 * 93.29363 * 12 10 9 14 14 O 1.21281 * 124.94192 * 196.29810 * 13 12 10 15 15 N 1.34735 * 109.93792 * 16.31290 * 13 12 10 16 16 C 1.46501 * 124.30373 * 180.38847 * 15 13 12 17 17 C 1.53952 * 113.73853 * 36.63425 * 16 15 13 18 18 N 1.47582 * 86.11532 * 222.04930 * 17 16 15 19 19 C 1.36941 * 134.48992 * 204.63775 * 18 17 16 20 20 H 1.08001 * 119.99896 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00005 * 0.02562 * 19 18 17 22 22 N 1.31624 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99967 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47204 * 89.99981 * 23 21 19 25 25 H 1.48502 * 109.47515 * 209.99874 * 23 21 19 26 26 H 1.48499 * 109.47275 * 330.00112 * 23 21 19 27 27 C 1.47574 * 91.01704 * 24.64081 * 18 17 16 28 28 C 1.46768 * 111.35098 * 0.35387 * 15 13 12 29 29 H 1.08998 * 109.46823 * 60.00102 * 1 2 3 30 30 H 1.08995 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46862 * 300.00092 * 1 2 3 32 32 H 1.09001 * 109.46934 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47298 * 299.99896 * 5 3 2 34 34 H 1.09001 * 109.47273 * 60.00353 * 5 3 2 35 35 H 1.08999 * 109.46467 * 175.00037 * 6 3 2 36 36 H 1.08998 * 109.47121 * 54.99842 * 6 3 2 37 37 H 0.97006 * 119.99854 * 0.02562 * 9 7 6 38 38 H 1.09002 * 110.48860 * 212.03837 * 12 10 9 39 39 H 1.08998 * 110.48497 * 334.54730 * 12 10 9 40 40 H 1.09000 * 112.95003 * 168.37039 * 16 15 13 41 41 H 1.08996 * 113.77023 * 336.35293 * 17 16 15 42 42 H 1.08999 * 113.76579 * 107.74746 * 17 16 15 43 43 H 0.96999 * 119.99461 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.77320 * 221.05870 * 27 18 17 45 45 H 1.09006 * 113.77045 * 89.66066 * 27 18 17 46 46 H 1.09000 * 110.24529 * 224.01554 * 28 15 13 47 47 H 1.09008 * 110.31722 * 102.05615 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 0.8419 5 6 1.7429 2.4015 -1.3074 6 6 3.7371 1.9411 0.1258 7 6 4.1919 1.4269 1.4673 8 8 3.3842 0.9665 2.2460 9 7 5.4965 1.4787 1.8018 10 6 5.9389 0.9784 3.1057 11 1 5.2071 1.2114 3.8793 12 6 6.2197 -0.5411 3.0492 13 6 7.6993 -0.6370 2.7492 14 8 8.2640 -1.6334 2.3502 15 7 8.2949 0.5471 2.9911 16 6 9.7235 0.8076 2.7974 17 6 10.3243 0.0896 1.5753 18 7 11.4809 -0.2055 2.4433 19 6 12.8043 -0.4769 2.2193 20 1 13.4656 -0.6644 3.0524 21 6 13.2958 -0.5111 0.9216 22 7 12.4898 -0.2832 -0.0937 23 14 15.1012 -0.8807 0.6161 24 1 15.2872 -2.3458 0.4604 25 1 15.5452 -0.1911 -0.6219 26 1 15.9067 -0.3991 1.7670 27 6 10.6384 -0.0907 3.6495 28 6 7.3295 1.5423 3.4724 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9878 3.4637 -1.3072 33 1 2.2355 1.9149 -2.1492 34 1 0.6637 2.2778 -1.3970 35 1 3.9903 2.9975 0.0366 36 1 4.2340 1.3803 -0.6658 37 1 6.1426 1.8474 1.1791 38 1 5.9940 -1.0067 4.0085 39 1 5.6381 -1.0072 2.2538 40 1 9.9737 1.8671 2.8529 41 1 9.7679 -0.7961 1.2687 42 1 10.5570 0.7560 0.7448 43 1 12.8332 -0.3074 -1.0005 44 1 11.1218 0.4318 4.4750 45 1 10.1742 -1.0293 3.9522 46 1 7.4925 2.4978 2.9738 47 1 7.4155 1.6615 4.5525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108538007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:37 Heat of formation + Delta-G solvation = -3.261743 kcal Electronic energy + Delta-G solvation = -27755.169111 eV Core-core repulsion = 23873.559278 eV Total energy + Delta-G solvation = -3881.609833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.73923 -39.53599 -37.27561 -36.40168 -34.86573 -33.88918 -32.16872 -30.56784 -29.41996 -28.16145 -27.51012 -26.88499 -24.72515 -23.46534 -22.95731 -21.52533 -20.66857 -20.29753 -18.28542 -17.42012 -17.00777 -16.90329 -16.72443 -16.22317 -15.60827 -15.23876 -14.94252 -14.59198 -14.51517 -14.23615 -13.97731 -13.90743 -13.66265 -13.47656 -13.41647 -13.05092 -13.00014 -12.53542 -12.49496 -12.31655 -11.92551 -11.76623 -11.73659 -11.68318 -11.58515 -11.36973 -11.34206 -10.84636 -10.68082 -10.19188 -10.07609 -9.98320 -9.93387 -9.56003 -9.45698 -9.10267 -8.64161 -8.16157 -7.68444 -6.80629 -5.71928 -3.03722 1.46614 2.35639 2.48016 2.86380 2.98776 3.27780 3.42806 3.47952 3.48882 4.21121 4.26767 4.36780 4.48644 4.51944 4.78686 4.79301 4.84493 4.86756 4.91556 5.04638 5.08534 5.16896 5.23508 5.26211 5.39554 5.40417 5.44105 5.51760 5.54863 5.63268 5.65601 5.71079 5.79120 5.88052 6.27982 6.30466 6.53150 6.60737 6.89555 7.27708 7.29420 7.51103 7.59356 7.65842 8.02087 8.04436 8.60021 9.09259 9.75164 10.64512 11.45314 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.002262 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.360151 B =12373.171470 C =12954.287145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.235 6.235 3 C -0.045 4.045 4 H 0.093 0.907 5 C -0.149 4.149 6 C -0.126 4.126 7 C 0.511 3.489 8 O -0.516 6.516 9 N -0.723 5.723 10 C 0.137 3.863 11 H 0.113 0.887 12 C -0.166 4.166 13 C 0.513 3.487 14 O -0.508 6.508 15 N -0.611 5.611 16 C 0.099 3.901 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.220 4.220 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.111 3.889 28 C 0.096 3.904 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.404 0.596 38 H 0.108 0.892 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.069 0.931 43 H 0.253 0.747 44 H 0.042 0.958 45 H 0.039 0.961 46 H 0.083 0.917 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.925 10.413 1.922 27.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.009 6.009 3 C -0.174 4.174 4 H 0.112 0.888 5 C -0.208 4.208 6 C -0.167 4.167 7 C 0.297 3.703 8 O -0.391 6.391 9 N -0.376 5.376 10 C 0.032 3.968 11 H 0.130 0.870 12 C -0.208 4.208 13 C 0.300 3.700 14 O -0.383 6.383 15 N -0.347 5.347 16 C -0.004 4.004 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.566 5.566 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.016 4.016 28 C -0.028 4.028 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.126 0.874 36 H 0.123 0.877 37 H 0.239 0.761 38 H 0.127 0.873 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.101 0.899 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.154 8.636 2.074 25.735 hybrid contribution 0.455 0.915 -0.474 1.126 sum -23.699 9.551 1.599 25.601 Atomic orbital electron populations 1.23380 0.95147 1.06271 1.04514 1.87099 1.06372 1.09765 1.97713 1.22863 0.97642 0.95437 1.01441 0.88842 1.22117 1.01566 1.00945 0.96182 1.21546 0.94761 1.03891 0.96526 1.20484 0.82118 0.78712 0.88975 1.90762 1.52692 1.44039 1.51572 1.46032 1.08642 1.64349 1.18610 1.21789 0.95744 0.92921 0.86390 0.86953 1.22812 0.95336 0.97291 1.05354 1.20787 0.88972 0.83012 0.77263 1.90782 1.70368 1.32546 1.44569 1.48605 1.08657 1.11660 1.65762 1.24043 0.75060 0.99931 1.01375 1.22765 0.85272 0.97107 0.92209 1.45673 1.03627 1.82640 1.01206 1.18988 0.82031 1.41330 0.92385 0.90217 1.24802 0.98133 1.02272 0.95312 1.69832 1.33680 1.55200 0.97931 0.86100 0.84264 0.77936 0.77334 1.21601 1.21647 1.20628 1.22928 0.90627 0.96258 0.91827 1.22310 0.86912 0.93100 1.00470 0.90852 0.88313 0.90623 0.91533 0.91068 0.92244 0.87380 0.87749 0.76101 0.87337 0.87990 0.87771 0.92454 0.91261 0.93688 0.93988 0.94356 0.89919 0.89826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.45 101.05 1.06 0.17 16 2 S -0.24 -2.41 20.24 -107.50 -2.18 -4.59 16 3 C -0.04 -0.34 2.44 -26.73 -0.07 -0.41 16 4 H 0.09 0.77 7.96 -51.92 -0.41 0.36 16 5 C -0.15 -0.82 9.10 37.16 0.34 -0.48 16 6 C -0.13 -0.89 5.17 -27.88 -0.14 -1.03 16 7 C 0.51 5.00 7.54 -10.98 -0.08 4.92 16 8 O -0.52 -6.67 14.53 5.56 0.08 -6.59 16 9 N -0.72 -6.38 5.16 -52.23 -0.27 -6.65 16 10 C 0.14 1.30 3.43 -66.30 -0.23 1.07 16 11 H 0.11 0.98 7.72 -51.93 -0.40 0.58 16 12 C -0.17 -2.06 6.57 -26.74 -0.18 -2.24 16 13 C 0.51 8.72 7.45 -10.72 -0.08 8.64 16 14 O -0.51 -11.49 14.67 5.56 0.08 -11.41 16 15 N -0.61 -9.13 3.16 -166.53 -0.53 -9.66 16 16 C 0.10 1.84 4.82 -70.14 -0.34 1.51 16 17 C 0.15 3.77 6.89 -2.97 -0.02 3.75 16 18 N -0.61 -16.34 3.70 -178.08 -0.66 -16.99 16 19 C -0.22 -6.41 10.70 -15.06 -0.16 -6.57 16 20 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -28.10 11.38 55.49 0.63 -27.47 16 23 Si 0.91 22.73 29.55 -169.99 -5.02 17.70 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.11 2.41 8.45 -2.98 -0.03 2.39 16 28 C 0.10 0.92 6.96 -3.12 -0.02 0.90 16 29 H 0.07 0.41 7.14 -51.93 -0.37 0.04 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.31 6.92 -51.93 -0.36 -0.05 16 35 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.40 3.06 8.58 -40.82 -0.35 2.71 16 38 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.10 1.39 8.09 -51.93 -0.42 0.97 16 40 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 41 H 0.06 1.58 5.60 -51.93 -0.29 1.29 16 42 H 0.07 1.85 7.15 -51.93 -0.37 1.47 16 43 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.04 0.89 7.40 -51.93 -0.38 0.51 16 46 H 0.08 0.65 8.04 -51.93 -0.42 0.24 16 47 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 LS Contribution 391.36 15.07 5.90 5.90 Total: -1.00 -37.57 391.36 -9.56 -47.13 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -7.55 Total: 0.36 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: -0.04 Total: 12.27 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.82 Total: -60.77 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: 0.16 Total: -18.00 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.70 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.18 Total: -4.59 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.57 -9.56 -47.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108538007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.866 kcal (2) G-P(sol) polarization free energy of solvation -37.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds