Wall clock time and date at job start Wed Apr 1 2020 00:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.81402 * 103.00174 * 2 1 4 4 H 1.09002 * 109.46741 * 55.00093 * 3 2 1 5 5 C 1.52999 * 109.46814 * 294.99837 * 3 2 1 6 6 C 1.53001 * 109.47028 * 174.99867 * 3 2 1 7 7 C 1.50701 * 109.46844 * 294.99886 * 6 3 2 8 8 O 1.21277 * 120.00509 * 0.02562 * 7 6 3 9 9 N 1.34778 * 119.99633 * 180.02562 * 7 6 3 10 10 C 1.46495 * 120.00062 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.85212 * 322.66094 * 10 9 7 12 12 C 1.54623 * 110.97377 * 86.45206 * 10 9 7 13 13 C 1.51282 * 104.31101 * 93.29363 * 12 10 9 14 14 O 1.21281 * 124.94192 * 196.29810 * 13 12 10 15 15 N 1.34735 * 109.93792 * 16.31290 * 13 12 10 16 16 C 1.46501 * 124.30373 * 180.38847 * 15 13 12 17 17 C 1.53952 * 113.73853 * 36.63425 * 16 15 13 18 18 N 1.47582 * 86.11532 * 222.04930 * 17 16 15 19 19 C 1.36941 * 134.48992 * 204.63775 * 18 17 16 20 20 H 1.08001 * 119.99896 * 180.02562 * 19 18 17 21 21 C 1.38814 * 120.00005 * 0.02562 * 19 18 17 22 22 N 1.31624 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99967 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47204 * 89.99981 * 23 21 19 25 25 H 1.48502 * 109.47515 * 209.99874 * 23 21 19 26 26 H 1.48499 * 109.47275 * 330.00112 * 23 21 19 27 27 C 1.47574 * 91.01704 * 24.64081 * 18 17 16 28 28 C 1.46768 * 111.35098 * 0.35387 * 15 13 12 29 29 H 1.08998 * 109.46823 * 60.00102 * 1 2 3 30 30 H 1.08995 * 109.47048 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46862 * 300.00092 * 1 2 3 32 32 H 1.09001 * 109.46934 * 179.97438 * 5 3 2 33 33 H 1.08996 * 109.47298 * 299.99896 * 5 3 2 34 34 H 1.09001 * 109.47273 * 60.00353 * 5 3 2 35 35 H 1.08999 * 109.46467 * 175.00037 * 6 3 2 36 36 H 1.08998 * 109.47121 * 54.99842 * 6 3 2 37 37 H 0.97006 * 119.99854 * 0.02562 * 9 7 6 38 38 H 1.09002 * 110.48860 * 212.03837 * 12 10 9 39 39 H 1.08998 * 110.48497 * 334.54730 * 12 10 9 40 40 H 1.09000 * 112.95003 * 168.37039 * 16 15 13 41 41 H 1.08996 * 113.77023 * 336.35293 * 17 16 15 42 42 H 1.08999 * 113.76579 * 107.74746 * 17 16 15 43 43 H 0.96999 * 119.99461 * 180.02562 * 22 21 19 44 44 H 1.08999 * 113.77320 * 221.05870 * 27 18 17 45 45 H 1.09006 * 113.77045 * 89.66066 * 27 18 17 46 46 H 1.09000 * 110.24529 * 224.01554 * 28 15 13 47 47 H 1.09008 * 110.31722 * 102.05615 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.7296 2.2541 0.8419 5 6 1.7429 2.4015 -1.3074 6 6 3.7371 1.9411 0.1258 7 6 4.1919 1.4269 1.4673 8 8 3.3842 0.9665 2.2460 9 7 5.4965 1.4787 1.8018 10 6 5.9389 0.9784 3.1057 11 1 5.2071 1.2114 3.8793 12 6 6.2197 -0.5411 3.0492 13 6 7.6993 -0.6370 2.7492 14 8 8.2640 -1.6334 2.3502 15 7 8.2949 0.5471 2.9911 16 6 9.7235 0.8076 2.7974 17 6 10.3243 0.0896 1.5753 18 7 11.4809 -0.2055 2.4433 19 6 12.8043 -0.4769 2.2193 20 1 13.4656 -0.6644 3.0524 21 6 13.2958 -0.5111 0.9216 22 7 12.4898 -0.2832 -0.0937 23 14 15.1012 -0.8807 0.6161 24 1 15.2872 -2.3458 0.4604 25 1 15.5452 -0.1911 -0.6219 26 1 15.9067 -0.3991 1.7670 27 6 10.6384 -0.0907 3.6495 28 6 7.3295 1.5423 3.4724 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.9878 3.4637 -1.3072 33 1 2.2355 1.9149 -2.1492 34 1 0.6637 2.2778 -1.3970 35 1 3.9903 2.9975 0.0366 36 1 4.2340 1.3803 -0.6658 37 1 6.1426 1.8474 1.1791 38 1 5.9940 -1.0067 4.0085 39 1 5.6381 -1.0072 2.2538 40 1 9.9737 1.8671 2.8529 41 1 9.7679 -0.7961 1.2687 42 1 10.5570 0.7560 0.7448 43 1 12.8332 -0.3074 -1.0005 44 1 11.1218 0.4318 4.4750 45 1 10.1742 -1.0293 3.9522 46 1 7.4925 2.4978 2.9738 47 1 7.4155 1.6615 4.5525 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108538007.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:36 Heat of formation + Delta-G solvation = -30.603011 kcal Electronic energy + Delta-G solvation = -27756.354718 eV Core-core repulsion = 23873.559278 eV Total energy + Delta-G solvation = -3882.795439 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89055 -40.52690 -38.94395 -37.64495 -35.48324 -35.03329 -34.09106 -31.79647 -30.07389 -29.21773 -28.85207 -27.94895 -26.60606 -25.24128 -23.66652 -22.38550 -22.05481 -21.33141 -19.73123 -18.79195 -18.17880 -17.92504 -17.61499 -17.52914 -16.98393 -16.40597 -16.23782 -15.90465 -15.61177 -15.34116 -15.11016 -14.98505 -14.63999 -14.56357 -14.23625 -14.18604 -14.05050 -13.56621 -13.51515 -13.40561 -13.21007 -13.04184 -12.90667 -12.83384 -12.70474 -12.63665 -12.38827 -12.30694 -12.12549 -12.01860 -11.88085 -11.52421 -11.04703 -10.83867 -10.63415 -10.60486 -10.03900 -9.54549 -8.93903 -8.45548 -7.92857 -5.27390 0.85076 1.42735 1.46538 1.54917 1.61038 1.72842 1.76280 2.00022 2.20677 2.48379 3.25468 3.37389 3.47679 3.50778 3.65414 3.77122 3.80344 3.89879 4.24263 4.26663 4.27620 4.28377 4.34377 4.37534 4.54179 4.59915 4.64075 4.69660 4.70911 4.77822 4.79204 4.85314 4.89369 4.92508 4.93329 5.03289 5.21843 5.24917 5.29275 5.48145 5.52994 5.87065 5.90602 6.27482 6.57645 6.88656 7.26091 7.32462 7.57195 8.52906 9.24274 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019156 B = 0.002262 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.360151 B =12373.171470 C =12954.287145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 S -0.318 6.318 3 C -0.028 4.028 4 H 0.088 0.912 5 C -0.144 4.144 6 C -0.125 4.125 7 C 0.510 3.490 8 O -0.550 6.550 9 N -0.719 5.719 10 C 0.149 3.851 11 H 0.132 0.868 12 C -0.155 4.155 13 C 0.502 3.498 14 O -0.576 6.576 15 N -0.607 5.607 16 C 0.139 3.861 17 C 0.148 3.852 18 N -0.636 5.636 19 C -0.237 4.237 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.953 5.953 23 Si 0.984 3.016 24 H -0.292 1.292 25 H -0.289 1.289 26 H -0.262 1.262 27 C 0.111 3.889 28 C 0.098 3.902 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.143 0.857 36 H 0.104 0.896 37 H 0.411 0.589 38 H 0.126 0.874 39 H 0.086 0.914 40 H 0.139 0.861 41 H 0.021 0.979 42 H 0.043 0.957 43 H 0.249 0.751 44 H 0.069 0.931 45 H 0.020 0.980 46 H 0.112 0.888 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.773 13.342 3.119 29.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 S -0.093 6.093 3 C -0.157 4.157 4 H 0.107 0.893 5 C -0.203 4.203 6 C -0.165 4.165 7 C 0.297 3.703 8 O -0.427 6.427 9 N -0.372 5.372 10 C 0.043 3.957 11 H 0.150 0.850 12 C -0.197 4.197 13 C 0.292 3.708 14 O -0.456 6.456 15 N -0.340 5.340 16 C 0.035 3.965 17 C 0.022 3.978 18 N -0.363 5.363 19 C -0.365 4.365 20 H 0.103 0.897 21 C -0.263 4.263 22 N -0.602 5.602 23 Si 0.812 3.188 24 H -0.219 1.219 25 H -0.215 1.215 26 H -0.187 1.187 27 C -0.016 4.016 28 C -0.024 4.024 29 H 0.108 0.892 30 H 0.119 0.881 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.161 0.839 36 H 0.122 0.878 37 H 0.248 0.752 38 H 0.144 0.856 39 H 0.104 0.896 40 H 0.157 0.843 41 H 0.039 0.961 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.038 0.962 46 H 0.130 0.870 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.039 11.626 3.313 27.805 hybrid contribution 0.635 -0.037 -0.814 1.033 sum -24.405 11.589 2.499 27.132 Atomic orbital electron populations 1.23356 0.91994 1.06804 1.05451 1.87351 1.10153 1.13909 1.97899 1.22878 0.97945 0.92499 1.02399 0.89348 1.22083 1.01722 1.01814 0.94643 1.21640 0.94329 1.05786 0.94755 1.20934 0.81944 0.77949 0.89511 1.90750 1.53578 1.45524 1.52809 1.46048 1.08671 1.63869 1.18641 1.21784 0.96325 0.90315 0.87252 0.85000 1.22761 0.91311 1.00053 1.05529 1.21609 0.90817 0.82480 0.75944 1.90749 1.72131 1.35151 1.47538 1.48546 1.07973 1.12531 1.64953 1.23356 0.76884 1.00287 0.95978 1.22559 0.85464 0.96038 0.93738 1.46127 1.03688 1.82689 1.03760 1.19435 0.83584 1.40719 0.92809 0.89719 1.25734 1.02756 1.02655 0.95114 1.70041 1.35602 1.56533 0.97996 0.85000 0.79059 0.77202 0.77576 1.21925 1.21524 1.18665 1.23026 0.90636 0.96369 0.91544 1.22694 0.84779 0.92360 1.02551 0.89174 0.88055 0.90301 0.89452 0.91447 0.91875 0.83915 0.87786 0.75226 0.85576 0.89580 0.84302 0.96128 0.93881 0.94241 0.91268 0.96235 0.87000 0.86638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 10.45 113.37 1.19 -0.27 16 2 S -0.32 -6.54 20.24 -56.49 -1.14 -7.68 16 3 C -0.03 -0.39 2.44 30.59 0.07 -0.31 16 4 H 0.09 1.31 7.96 -2.39 -0.02 1.30 16 5 C -0.14 -1.26 9.10 71.98 0.66 -0.60 16 6 C -0.12 -1.51 5.17 29.85 0.15 -1.35 16 7 C 0.51 9.07 7.54 87.66 0.66 9.74 16 8 O -0.55 -13.58 14.53 -3.02 -0.04 -13.62 16 9 N -0.72 -10.95 5.16 -437.55 -2.26 -13.21 16 10 C 0.15 2.37 3.43 46.05 0.16 2.53 16 11 H 0.13 1.77 7.72 -2.38 -0.02 1.75 16 12 C -0.16 -3.70 6.57 30.59 0.20 -3.50 16 13 C 0.50 17.19 7.45 87.85 0.65 17.85 16 14 O -0.58 -27.57 14.67 -3.03 -0.04 -27.62 16 15 N -0.61 -17.03 3.16 -799.19 -2.53 -19.55 16 16 C 0.14 5.00 4.82 46.75 0.23 5.23 16 17 C 0.15 7.59 6.89 86.48 0.60 8.18 16 18 N -0.64 -34.95 3.70 -717.32 -2.65 -37.60 16 19 C -0.24 -14.04 10.70 84.03 0.90 -13.14 16 20 H 0.09 4.76 7.83 -2.91 -0.02 4.73 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 22 N -0.95 -60.17 11.38 21.65 0.25 -59.93 16 23 Si 0.98 47.38 29.55 68.60 2.03 49.41 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 26 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 27 C 0.11 4.75 8.45 86.48 0.73 5.49 16 28 C 0.10 1.45 6.96 86.83 0.60 2.06 16 29 H 0.09 0.89 7.14 -2.39 -0.02 0.87 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.51 6.92 -2.39 -0.02 0.50 16 35 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.41 5.15 8.58 -92.70 -0.79 4.35 16 38 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.09 2.38 8.09 -2.39 -0.02 2.36 16 40 H 0.14 4.15 8.14 -2.39 -0.02 4.13 16 41 H 0.02 1.23 5.60 -2.39 -0.01 1.21 16 42 H 0.04 2.39 7.15 -2.39 -0.02 2.37 16 43 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.02 0.93 7.40 -2.38 -0.02 0.91 16 46 H 0.11 1.14 8.04 -2.39 -0.02 1.12 16 47 H 0.12 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -88.48 391.36 1.05 -87.43 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.18 Total: 14.17 kcal Atomic # 6 Polarization: 20.94 SS G_CDS: 7.27 Total: 28.20 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -7.19 Total: -130.29 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -0.09 Total: -41.24 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Atomic # 16 Polarization: -6.54 SS G_CDS: -1.14 Total: -7.68 kcal Total: -88.48 1.05 -87.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108538007.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.826 kcal (2) G-P(sol) polarization free energy of solvation -88.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds