Wall clock time and date at job start Wed Apr 1 2020 00:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.81396 * 102.99921 * 2 1 4 4 H 1.09009 * 109.46844 * 304.99684 * 3 2 1 5 5 C 1.52994 * 109.47429 * 64.99741 * 3 2 1 6 6 C 1.52996 * 109.47092 * 185.00187 * 3 2 1 7 7 C 1.50702 * 109.47159 * 64.99519 * 6 3 2 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 3 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09001 * 110.85718 * 322.67178 * 10 9 7 12 12 C 1.54632 * 110.96962 * 86.45510 * 10 9 7 13 13 C 1.51278 * 104.19463 * 142.91861 * 12 10 9 14 14 O 1.21282 * 124.93916 * 163.71371 * 13 12 10 15 15 N 1.34412 * 110.11694 * 343.74777 * 13 12 10 16 16 C 1.46503 * 124.34978 * 179.57404 * 15 13 12 17 17 C 1.53948 * 113.74317 * 36.64839 * 16 15 13 18 18 N 1.47586 * 86.11585 * 222.04956 * 17 16 15 19 19 C 1.36940 * 134.48731 * 204.63792 * 18 17 16 20 20 H 1.08000 * 119.99688 * 180.02562 * 19 18 17 21 21 C 1.38805 * 120.00168 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00276 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99889 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47584 * 89.99835 * 23 21 19 25 25 H 1.48504 * 109.47151 * 210.00142 * 23 21 19 26 26 H 1.48501 * 109.47043 * 329.99776 * 23 21 19 27 27 C 1.47576 * 91.01377 * 24.64202 * 18 17 16 28 28 C 1.46764 * 111.30359 * 359.59513 * 15 13 12 29 29 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46853 * 299.99994 * 1 2 3 31 31 H 1.08998 * 109.47005 * 60.00067 * 1 2 3 32 32 H 1.09003 * 109.47483 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47295 * 300.00285 * 5 3 2 34 34 H 1.09009 * 109.47154 * 60.00133 * 5 3 2 35 35 H 1.09004 * 109.47066 * 304.99722 * 6 3 2 36 36 H 1.08994 * 109.47405 * 184.99552 * 6 3 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 38 38 H 1.09002 * 110.48765 * 261.60135 * 12 10 9 39 39 H 1.09000 * 110.48109 * 24.11036 * 12 10 9 40 40 H 1.09004 * 112.94818 * 168.38828 * 16 15 13 41 41 H 1.09001 * 113.76553 * 336.35113 * 17 16 15 42 42 H 1.09002 * 113.76390 * 107.74774 * 17 16 15 43 43 H 0.97002 * 120.00030 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.76745 * 221.05577 * 27 18 17 45 45 H 1.09003 * 113.77329 * 89.66475 * 27 18 17 46 46 H 1.08997 * 110.24337 * 258.01476 * 28 15 13 47 47 H 1.08996 * 110.24586 * 136.01735 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4016 1.3072 6 6 3.7370 1.9412 -0.1258 7 6 4.1919 1.4269 -1.4673 8 8 3.3840 0.9671 -2.2463 9 7 5.4958 1.4834 -1.8038 10 6 5.9373 0.9890 -3.1102 11 1 5.3771 0.0993 -3.3980 12 6 5.8174 2.0910 -4.1883 13 6 7.0257 1.8774 -5.0731 14 8 7.1631 2.3417 -6.1851 15 7 7.9244 1.0975 -4.4480 16 6 9.2058 0.6857 -5.0265 17 6 9.8748 1.7723 -5.8877 18 7 10.1975 0.6842 -6.8312 19 6 11.1598 0.4971 -7.7873 20 1 11.1800 -0.4176 -8.3613 21 6 12.1092 1.4828 -8.0188 22 7 12.0843 2.5977 -7.3197 23 14 13.4214 1.2277 -9.3236 24 1 12.9305 1.7430 -10.6269 25 1 14.6545 1.9584 -8.9351 26 1 13.7226 -0.2213 -9.4460 27 6 9.0665 -0.1208 -6.3304 28 6 7.4568 0.7110 -3.1116 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9884 3.4636 1.3074 33 1 0.6636 2.2779 1.3968 34 1 2.2355 1.9150 2.1492 35 1 4.2340 1.3804 0.6659 36 1 3.9903 2.9975 -0.0367 37 1 6.1420 1.8513 -1.1809 38 1 4.8983 1.9662 -4.7609 39 1 5.8483 3.0790 -3.7289 40 1 9.8741 0.2283 -4.2969 41 1 9.1766 2.5078 -6.2874 42 1 10.7507 2.2243 -5.4222 43 1 12.7476 3.2867 -7.4817 44 1 9.2970 -1.1802 -6.2184 45 1 8.1309 0.0585 -6.8602 46 1 7.9512 1.3140 -2.3500 47 1 7.6468 -0.3480 -2.9372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108538008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:39 Heat of formation + Delta-G solvation = -1.873651 kcal Electronic energy + Delta-G solvation = -27354.634812 eV Core-core repulsion = 23473.085172 eV Total energy + Delta-G solvation = -3881.549641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.73223 -39.65837 -37.27600 -36.43856 -34.96035 -34.09328 -32.17340 -30.57302 -29.48551 -28.26135 -27.51019 -26.82946 -24.70478 -23.48704 -22.96147 -21.62518 -20.80846 -20.31035 -18.31433 -17.54018 -17.09280 -16.84903 -16.62293 -16.22829 -15.84423 -15.30836 -14.91571 -14.70696 -14.54470 -14.15232 -14.09036 -13.88197 -13.70409 -13.56899 -13.48407 -13.30808 -13.07692 -12.69883 -12.45477 -12.37170 -12.01484 -11.86541 -11.78493 -11.68433 -11.56400 -11.37959 -11.13209 -10.83977 -10.68311 -10.23838 -10.14497 -10.05204 -9.96200 -9.62605 -9.47061 -9.11679 -8.63380 -8.16529 -7.78004 -6.79317 -5.70522 -3.02387 1.37462 2.26038 2.39495 2.70827 2.95038 3.32374 3.43930 3.48985 3.49978 4.10866 4.17379 4.33057 4.50447 4.53103 4.69834 4.73148 4.78985 4.83901 4.86279 4.92178 4.96394 5.04457 5.15113 5.26342 5.32706 5.36934 5.40460 5.43598 5.55984 5.61156 5.67815 5.71994 5.73197 5.87949 6.18444 6.31790 6.54215 6.60697 6.89547 7.17424 7.31224 7.51356 7.60861 7.66922 7.96334 8.03388 8.57776 9.10543 9.76465 10.65839 11.46739 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.039303 B = 0.001856 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.234083 B =15086.116324 C =15237.063231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.239 6.239 3 C -0.046 4.046 4 H 0.094 0.906 5 C -0.148 4.148 6 C -0.124 4.124 7 C 0.510 3.490 8 O -0.511 6.511 9 N -0.723 5.723 10 C 0.137 3.863 11 H 0.110 0.890 12 C -0.166 4.166 13 C 0.515 3.485 14 O -0.508 6.508 15 N -0.606 5.606 16 C 0.098 3.902 17 C 0.152 3.848 18 N -0.605 5.605 19 C -0.219 4.219 20 H 0.080 0.920 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 C 0.111 3.889 28 C 0.099 3.901 29 H 0.098 0.902 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.402 0.598 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.253 0.747 44 H 0.043 0.957 45 H 0.039 0.961 46 H 0.072 0.928 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.992 -1.259 23.748 31.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.013 6.013 3 C -0.175 4.175 4 H 0.113 0.887 5 C -0.208 4.208 6 C -0.165 4.165 7 C 0.295 3.705 8 O -0.385 6.385 9 N -0.376 5.376 10 C 0.031 3.969 11 H 0.128 0.872 12 C -0.208 4.208 13 C 0.301 3.699 14 O -0.382 6.382 15 N -0.341 5.341 16 C -0.004 4.004 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.347 4.347 20 H 0.098 0.902 21 C -0.205 4.205 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.016 4.016 28 C -0.026 4.026 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.121 0.879 36 H 0.126 0.874 37 H 0.237 0.763 38 H 0.121 0.879 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.077 0.923 42 H 0.088 0.912 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.091 0.909 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.467 -2.173 22.333 30.371 hybrid contribution 0.152 1.163 -0.400 1.239 sum -20.316 -1.010 21.933 29.913 Atomic orbital electron populations 1.23382 0.94856 1.06321 1.04645 1.86940 1.06749 1.09897 1.97731 1.22875 0.97655 0.95399 1.01579 0.88722 1.22112 1.01647 1.00965 0.96030 1.21529 0.94797 1.03850 0.96313 1.20503 0.82175 0.78853 0.88984 1.90792 1.52427 1.43557 1.51683 1.45929 1.08810 1.64870 1.18021 1.21766 0.94754 0.97588 0.82747 0.87186 1.22816 0.99218 1.00792 0.97941 1.20614 0.84454 0.78319 0.86514 1.90785 1.78403 1.50312 1.18708 1.48490 1.19507 1.50564 1.15543 1.24086 0.81792 1.00477 0.94094 1.22788 0.96450 0.91115 0.87070 1.45668 1.28268 1.16468 1.42716 1.18991 1.02930 1.01586 1.11211 0.90185 1.24800 0.99551 0.96198 0.99977 1.69831 1.36911 1.07342 1.42583 0.86096 0.80989 0.77324 0.81208 1.21613 1.21654 1.20613 1.22934 0.92223 0.95099 0.91367 1.22191 0.92433 1.01685 0.86255 0.88281 0.90812 0.90500 0.91491 0.92191 0.91166 0.87885 0.87354 0.76318 0.87919 0.87955 0.87660 0.92333 0.91206 0.93684 0.93908 0.94309 0.90946 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.45 101.05 1.06 0.29 16 2 S -0.24 -2.10 20.24 -107.50 -2.18 -4.28 16 3 C -0.05 -0.30 2.44 -26.74 -0.07 -0.36 16 4 H 0.09 0.73 7.96 -51.92 -0.41 0.31 16 5 C -0.15 -0.62 9.10 37.15 0.34 -0.28 16 6 C -0.12 -0.65 5.17 -27.88 -0.14 -0.79 16 7 C 0.51 4.34 7.54 -10.98 -0.08 4.26 16 8 O -0.51 -6.43 14.54 5.55 0.08 -6.35 16 9 N -0.72 -5.06 5.18 -52.22 -0.27 -5.33 16 10 C 0.14 1.32 3.43 -66.30 -0.23 1.09 16 11 H 0.11 1.19 7.73 -51.93 -0.40 0.79 16 12 C -0.17 -2.02 6.59 -26.74 -0.18 -2.19 16 13 C 0.51 8.85 7.44 -10.87 -0.08 8.77 16 14 O -0.51 -11.50 14.64 5.56 0.08 -11.42 16 15 N -0.61 -9.38 3.15 -166.63 -0.53 -9.90 16 16 C 0.10 1.88 4.82 -70.14 -0.34 1.55 16 17 C 0.15 3.82 6.88 -2.97 -0.02 3.80 16 18 N -0.60 -16.50 3.70 -178.07 -0.66 -17.16 16 19 C -0.22 -6.45 10.70 -15.06 -0.16 -6.61 16 20 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 22 N -0.92 -28.34 11.38 55.49 0.63 -27.71 16 23 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 C 0.11 2.46 8.45 -2.98 -0.03 2.43 16 28 C 0.10 0.98 7.07 -3.12 -0.02 0.96 16 29 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 30 H 0.07 0.35 7.14 -51.93 -0.37 -0.02 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.25 6.92 -51.93 -0.36 -0.11 16 34 H 0.07 0.28 8.14 -51.92 -0.42 -0.14 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.40 1.63 8.37 -40.82 -0.34 1.29 16 38 H 0.10 1.31 8.14 -51.93 -0.42 0.88 16 39 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 40 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 41 H 0.06 1.63 5.58 -51.93 -0.29 1.34 16 42 H 0.07 1.89 7.15 -51.93 -0.37 1.52 16 43 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.92 7.41 -51.93 -0.38 0.53 16 46 H 0.07 0.57 7.77 -51.93 -0.40 0.17 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -38.11 390.96 -9.54 -47.65 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.53 Total: -1.78 kcal Atomic # 6 Polarization: 12.59 SS G_CDS: -0.04 Total: 12.54 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.82 Total: -60.10 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.16 Total: -17.77 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Atomic # 16 Polarization: -2.10 SS G_CDS: -2.18 Total: -4.28 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -38.11 -9.54 -47.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108538008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.778 kcal (2) G-P(sol) polarization free energy of solvation -38.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds