Wall clock time and date at job start Wed Apr 1 2020 00:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81410 * 1 3 3 C 1.81396 * 102.99921 * 2 1 4 4 H 1.09009 * 109.46844 * 304.99684 * 3 2 1 5 5 C 1.52994 * 109.47429 * 64.99741 * 3 2 1 6 6 C 1.52996 * 109.47092 * 185.00187 * 3 2 1 7 7 C 1.50702 * 109.47159 * 64.99519 * 6 3 2 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 3 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 3 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 H 1.09001 * 110.85718 * 322.67178 * 10 9 7 12 12 C 1.54632 * 110.96962 * 86.45510 * 10 9 7 13 13 C 1.51278 * 104.19463 * 142.91861 * 12 10 9 14 14 O 1.21282 * 124.93916 * 163.71371 * 13 12 10 15 15 N 1.34412 * 110.11694 * 343.74777 * 13 12 10 16 16 C 1.46503 * 124.34978 * 179.57404 * 15 13 12 17 17 C 1.53948 * 113.74317 * 36.64839 * 16 15 13 18 18 N 1.47586 * 86.11585 * 222.04956 * 17 16 15 19 19 C 1.36940 * 134.48731 * 204.63792 * 18 17 16 20 20 H 1.08000 * 119.99688 * 180.02562 * 19 18 17 21 21 C 1.38805 * 120.00168 * 0.02562 * 19 18 17 22 22 N 1.31617 * 120.00276 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99889 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47584 * 89.99835 * 23 21 19 25 25 H 1.48504 * 109.47151 * 210.00142 * 23 21 19 26 26 H 1.48501 * 109.47043 * 329.99776 * 23 21 19 27 27 C 1.47576 * 91.01377 * 24.64202 * 18 17 16 28 28 C 1.46764 * 111.30359 * 359.59513 * 15 13 12 29 29 H 1.09000 * 109.46870 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46853 * 299.99994 * 1 2 3 31 31 H 1.08998 * 109.47005 * 60.00067 * 1 2 3 32 32 H 1.09003 * 109.47483 * 179.97438 * 5 3 2 33 33 H 1.09001 * 109.47295 * 300.00285 * 5 3 2 34 34 H 1.09009 * 109.47154 * 60.00133 * 5 3 2 35 35 H 1.09004 * 109.47066 * 304.99722 * 6 3 2 36 36 H 1.08994 * 109.47405 * 184.99552 * 6 3 2 37 37 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 38 38 H 1.09002 * 110.48765 * 261.60135 * 12 10 9 39 39 H 1.09000 * 110.48109 * 24.11036 * 12 10 9 40 40 H 1.09004 * 112.94818 * 168.38828 * 16 15 13 41 41 H 1.09001 * 113.76553 * 336.35113 * 17 16 15 42 42 H 1.09002 * 113.76390 * 107.74774 * 17 16 15 43 43 H 0.97002 * 120.00030 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.76745 * 221.05577 * 27 18 17 45 45 H 1.09003 * 113.77329 * 89.66475 * 27 18 17 46 46 H 1.08997 * 110.24337 * 258.01476 * 28 15 13 47 47 H 1.08996 * 110.24586 * 136.01735 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2541 -0.8419 5 6 1.7428 2.4016 1.3072 6 6 3.7370 1.9412 -0.1258 7 6 4.1919 1.4269 -1.4673 8 8 3.3840 0.9671 -2.2463 9 7 5.4958 1.4834 -1.8038 10 6 5.9373 0.9890 -3.1102 11 1 5.3771 0.0993 -3.3980 12 6 5.8174 2.0910 -4.1883 13 6 7.0257 1.8774 -5.0731 14 8 7.1631 2.3417 -6.1851 15 7 7.9244 1.0975 -4.4480 16 6 9.2058 0.6857 -5.0265 17 6 9.8748 1.7723 -5.8877 18 7 10.1975 0.6842 -6.8312 19 6 11.1598 0.4971 -7.7873 20 1 11.1800 -0.4176 -8.3613 21 6 12.1092 1.4828 -8.0188 22 7 12.0843 2.5977 -7.3197 23 14 13.4214 1.2277 -9.3236 24 1 12.9305 1.7430 -10.6269 25 1 14.6545 1.9584 -8.9351 26 1 13.7226 -0.2213 -9.4460 27 6 9.0665 -0.1208 -6.3304 28 6 7.4568 0.7110 -3.1116 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.9884 3.4636 1.3074 33 1 0.6636 2.2779 1.3968 34 1 2.2355 1.9150 2.1492 35 1 4.2340 1.3804 0.6659 36 1 3.9903 2.9975 -0.0367 37 1 6.1420 1.8513 -1.1809 38 1 4.8983 1.9662 -4.7609 39 1 5.8483 3.0790 -3.7289 40 1 9.8741 0.2283 -4.2969 41 1 9.1766 2.5078 -6.2874 42 1 10.7507 2.2243 -5.4222 43 1 12.7476 3.2867 -7.4817 44 1 9.2970 -1.1802 -6.2184 45 1 8.1309 0.0585 -6.8602 46 1 7.9512 1.3140 -2.3500 47 1 7.6468 -0.3480 -2.9372 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108538008.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:38 Heat of formation + Delta-G solvation = -29.838327 kcal Electronic energy + Delta-G solvation = -27355.847452 eV Core-core repulsion = 23473.085172 eV Total energy + Delta-G solvation = -3882.762280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.89291 -40.57173 -38.96687 -37.66915 -35.48140 -35.16187 -34.14299 -31.77819 -30.07076 -29.22926 -28.88161 -27.86756 -26.61878 -25.25248 -23.63219 -22.43700 -22.10372 -21.35643 -19.78219 -18.80969 -18.20395 -17.84283 -17.64643 -17.41130 -17.00265 -16.54575 -16.19724 -15.94405 -15.64225 -15.24290 -15.16480 -14.97803 -14.64127 -14.59129 -14.41929 -14.22931 -14.03035 -13.68952 -13.47692 -13.42538 -13.28426 -13.13459 -12.85413 -12.83240 -12.68528 -12.56295 -12.28364 -12.23119 -12.10521 -12.02582 -11.91214 -11.52252 -11.11330 -10.85823 -10.66253 -10.60188 -10.03046 -9.57893 -8.94982 -8.41585 -7.93313 -5.28163 0.86927 1.42541 1.46398 1.54919 1.57888 1.73758 1.76979 1.88377 2.23259 2.48237 3.24819 3.34659 3.46758 3.51226 3.67238 3.76475 3.78924 3.97003 4.05413 4.24182 4.28948 4.32143 4.34197 4.38725 4.52000 4.58388 4.64813 4.65798 4.73336 4.76435 4.80878 4.84203 4.90719 4.91590 4.94801 5.06771 5.20395 5.22439 5.31768 5.47097 5.50101 5.84382 5.89078 6.24788 6.63759 6.87906 7.21909 7.38140 7.56367 8.52000 9.23919 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.039303 B = 0.001856 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.234083 B =15086.116324 C =15237.063231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 S -0.306 6.306 3 C -0.035 4.035 4 H 0.077 0.923 5 C -0.143 4.143 6 C -0.118 4.118 7 C 0.506 3.494 8 O -0.556 6.556 9 N -0.707 5.707 10 C 0.153 3.847 11 H 0.100 0.900 12 C -0.152 4.152 13 C 0.503 3.497 14 O -0.574 6.574 15 N -0.605 5.605 16 C 0.137 3.863 17 C 0.147 3.853 18 N -0.635 5.635 19 C -0.238 4.238 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.986 3.014 24 H -0.291 1.291 25 H -0.289 1.289 26 H -0.262 1.262 27 C 0.111 3.889 28 C 0.100 3.900 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.141 0.859 37 H 0.421 0.579 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.025 0.975 42 H 0.043 0.957 43 H 0.249 0.751 44 H 0.069 0.931 45 H 0.020 0.980 46 H 0.107 0.893 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.133 -1.897 26.702 34.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.080 6.080 3 C -0.164 4.164 4 H 0.096 0.904 5 C -0.201 4.201 6 C -0.159 4.159 7 C 0.293 3.707 8 O -0.433 6.433 9 N -0.361 5.361 10 C 0.046 3.954 11 H 0.118 0.882 12 C -0.193 4.193 13 C 0.291 3.709 14 O -0.453 6.453 15 N -0.338 5.338 16 C 0.033 3.967 17 C 0.021 3.979 18 N -0.362 5.362 19 C -0.366 4.366 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.813 3.187 24 H -0.218 1.218 25 H -0.215 1.215 26 H -0.187 1.187 27 C -0.016 4.016 28 C -0.022 4.022 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.091 0.909 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.259 0.741 38 H 0.113 0.887 39 H 0.138 0.862 40 H 0.157 0.843 41 H 0.042 0.958 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.087 0.913 45 H 0.038 0.962 46 H 0.125 0.875 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -20.628 -2.843 25.383 32.831 hybrid contribution 0.083 1.375 -1.311 1.902 sum -20.546 -1.468 24.071 31.681 Atomic orbital electron populations 1.23368 0.92545 1.06812 1.05255 1.87085 1.09613 1.13463 1.97860 1.22916 0.98490 0.92795 1.02190 0.90407 1.22074 1.01610 1.01750 0.94704 1.21620 0.93873 1.05859 0.94506 1.21125 0.81947 0.77881 0.89703 1.90788 1.53680 1.45557 1.53292 1.45743 1.08982 1.64320 1.17103 1.21452 0.94581 0.96090 0.83243 0.88220 1.22729 0.96065 1.02796 0.97725 1.21506 0.85862 0.77416 0.86089 1.90751 1.79912 1.52823 1.21848 1.48446 1.17893 1.49805 1.17633 1.23399 0.83336 0.96315 0.93670 1.22588 0.95243 0.91745 0.88320 1.46109 1.29207 1.18019 1.42833 1.19443 1.03530 1.01874 1.11794 0.89683 1.25744 1.02075 0.96010 1.02414 1.70041 1.37758 1.08177 1.44252 0.84982 0.77807 0.78076 0.77855 1.21844 1.21497 1.18683 1.23023 0.89822 0.96350 0.92384 1.22532 0.92339 1.03868 0.83503 0.87927 0.89101 0.90906 0.89722 0.92307 0.90631 0.86031 0.84086 0.74051 0.88734 0.86156 0.84336 0.95756 0.93865 0.94197 0.91289 0.96210 0.87516 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.45 113.37 1.19 -0.12 16 2 S -0.31 -5.14 20.24 -56.49 -1.14 -6.28 16 3 C -0.03 -0.38 2.44 30.59 0.07 -0.31 16 4 H 0.08 1.11 7.96 -2.39 -0.02 1.10 16 5 C -0.14 -0.79 9.10 71.98 0.66 -0.14 16 6 C -0.12 -0.84 5.17 29.85 0.15 -0.69 16 7 C 0.51 7.36 7.54 87.66 0.66 8.02 16 8 O -0.56 -13.48 14.54 -3.04 -0.04 -13.53 16 9 N -0.71 -7.39 5.18 -437.53 -2.27 -9.66 16 10 C 0.15 2.53 3.43 46.05 0.16 2.69 16 11 H 0.10 1.97 7.73 -2.39 -0.02 1.95 16 12 C -0.15 -3.52 6.59 30.59 0.20 -3.32 16 13 C 0.50 17.42 7.44 87.90 0.65 18.08 16 14 O -0.57 -27.47 14.64 -3.04 -0.04 -27.51 16 15 N -0.60 -17.80 3.15 -799.71 -2.52 -20.32 16 16 C 0.14 5.11 4.82 46.75 0.23 5.34 16 17 C 0.15 7.68 6.88 86.48 0.60 8.27 16 18 N -0.64 -35.41 3.70 -717.30 -2.65 -38.06 16 19 C -0.24 -14.24 10.70 84.03 0.90 -13.34 16 20 H 0.09 4.83 7.83 -2.91 -0.02 4.80 16 21 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 22 N -0.95 -60.67 11.38 21.65 0.25 -60.43 16 23 Si 0.99 47.71 29.55 68.60 2.03 49.74 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.11 4.88 8.45 86.48 0.73 5.61 16 28 C 0.10 1.60 7.07 86.83 0.61 2.21 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 0.72 7.14 -2.39 -0.02 0.70 16 31 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.06 0.35 6.92 -2.39 -0.02 0.33 16 34 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 35 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 36 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.42 1.38 8.37 -92.71 -0.78 0.60 16 38 H 0.09 2.40 8.14 -2.39 -0.02 2.39 16 39 H 0.12 2.37 8.08 -2.39 -0.02 2.35 16 40 H 0.14 4.35 8.14 -2.38 -0.02 4.33 16 41 H 0.02 1.45 5.58 -2.39 -0.01 1.44 16 42 H 0.04 2.44 7.15 -2.39 -0.02 2.43 16 43 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.02 0.97 7.41 -2.39 -0.02 0.95 16 46 H 0.11 1.10 7.77 -2.39 -0.02 1.08 16 47 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -90.08 390.96 1.08 -89.01 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.20 Total: 8.44 kcal Atomic # 6 Polarization: 21.32 SS G_CDS: 7.27 Total: 28.59 kcal Atomic # 7 Polarization: -121.27 SS G_CDS: -7.20 Total: -128.47 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.09 Total: -41.04 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 2.03 Total: 49.74 kcal Atomic # 16 Polarization: -5.14 SS G_CDS: -1.14 Total: -6.28 kcal Total: -90.08 1.08 -89.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108538008.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.170 kcal (2) G-P(sol) polarization free energy of solvation -90.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds