Wall clock time and date at job start Wed Apr 1 2020 00:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81396 * 103.00072 * 2 1 4 4 H 1.08998 * 109.47380 * 304.99507 * 3 2 1 5 5 C 1.52997 * 109.47403 * 64.99823 * 3 2 1 6 6 C 1.53007 * 109.47094 * 184.99829 * 3 2 1 7 7 C 1.50699 * 109.46904 * 64.99925 * 6 3 2 8 8 O 1.21278 * 120.00433 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99941 * 179.97438 * 7 6 3 10 10 C 1.46502 * 120.00079 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.85502 * 31.21180 * 10 9 7 12 12 C 1.54625 * 111.00497 * 267.39611 * 10 9 7 13 13 C 1.51287 * 104.25868 * 266.45014 * 12 10 9 14 14 O 1.21278 * 124.94364 * 164.00691 * 13 12 10 15 15 N 1.34415 * 110.11157 * 344.14071 * 13 12 10 16 16 C 1.46503 * 124.34768 * 179.43608 * 15 13 12 17 17 C 1.53947 * 113.74146 * 320.96468 * 16 15 13 18 18 N 1.47809 * 86.03580 * 90.88098 * 17 16 15 19 19 C 1.36935 * 134.45373 * 204.64193 * 18 17 16 20 20 H 1.08002 * 120.00390 * 172.62180 * 19 18 17 21 21 C 1.38813 * 119.99974 * 352.62084 * 19 18 17 22 22 N 1.31614 * 120.00421 * 353.36635 * 21 19 18 23 23 Si 1.86809 * 120.00035 * 173.36727 * 21 19 18 24 24 H 1.48500 * 109.46973 * 94.01450 * 23 21 19 25 25 H 1.48500 * 109.47017 * 214.01502 * 23 21 19 26 26 H 1.48499 * 109.46841 * 334.01387 * 23 21 19 27 27 C 1.47572 * 91.05350 * 24.54864 * 18 17 16 28 28 C 1.46758 * 111.30272 * 359.17272 * 15 13 12 29 29 H 1.09006 * 109.46962 * 60.00026 * 1 2 3 30 30 H 1.08999 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47030 * 300.00387 * 1 2 3 32 32 H 1.09004 * 109.46774 * 59.99790 * 5 3 2 33 33 H 1.09000 * 109.47242 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47181 * 300.00460 * 5 3 2 35 35 H 1.08991 * 109.47069 * 305.00117 * 6 3 2 36 36 H 1.08995 * 109.46778 * 184.99944 * 6 3 2 37 37 H 0.97004 * 120.00020 * 0.02562 * 9 7 6 38 38 H 1.09004 * 110.48373 * 25.34364 * 12 10 9 39 39 H 1.08997 * 110.48647 * 147.84983 * 12 10 9 40 40 H 1.09000 * 112.94296 * 189.36854 * 16 15 13 41 41 H 1.08996 * 113.76619 * 205.14803 * 17 16 15 42 42 H 1.09005 * 113.76893 * 336.53909 * 17 16 15 43 43 H 0.96998 * 120.00502 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.77013 * 221.15210 * 27 18 17 45 45 H 1.09006 * 113.77067 * 89.75363 * 27 18 17 46 46 H 1.09010 * 110.24725 * 136.27620 * 28 15 13 47 47 H 1.08996 * 110.24768 * 258.19523 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7371 1.9411 -0.1257 7 6 4.1920 1.4269 -1.4672 8 8 3.3841 0.9672 -2.2462 9 7 5.4965 1.4787 -1.8016 10 6 5.9389 0.9783 -3.1055 11 1 5.1618 1.1146 -3.8575 12 6 6.3663 -0.5049 -3.0140 13 6 7.8590 -0.4485 -2.7746 14 8 8.5338 -1.3733 -2.3743 15 7 8.3281 0.7767 -3.0672 16 6 9.7309 1.1779 -2.9356 17 6 10.4260 0.6018 -1.6886 18 7 10.8105 -0.5335 -2.5535 19 6 11.1344 -1.8446 -2.3274 20 1 11.2693 -2.5189 -3.1602 21 6 11.2895 -2.3071 -1.0278 22 7 11.2546 -1.4615 -0.0198 23 14 11.5476 -4.1296 -0.7095 24 1 13.0024 -4.4171 -0.6304 25 1 10.8983 -4.5051 0.5722 26 1 10.9472 -4.9154 -1.8174 27 6 10.7028 0.3124 -3.7579 28 6 7.2555 1.6590 -3.5413 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2354 1.9149 2.1491 33 1 1.9884 3.4636 1.3074 34 1 0.6636 2.2779 1.3969 35 1 4.2339 1.3804 0.6659 36 1 3.9902 2.9975 -0.0366 37 1 6.1427 1.8467 -1.1787 38 1 5.8620 -0.9966 -2.1821 39 1 6.1509 -1.0223 -3.9489 40 1 9.8803 2.2498 -3.0655 41 1 11.2713 1.1966 -1.3427 42 1 9.7379 0.3319 -0.8873 43 1 11.3634 -1.7846 0.8883 44 1 10.2354 -0.1881 -4.6060 45 1 11.6297 0.8220 -4.0213 46 1 7.3431 2.6419 -3.0782 47 1 7.2935 1.7493 -4.6269 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108538009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:42 Heat of formation + Delta-G solvation = 14.808039 kcal Electronic energy + Delta-G solvation = -28426.032962 eV Core-core repulsion = 24545.206694 eV Total energy + Delta-G solvation = -3880.826268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52802 -39.39502 -37.10541 -35.92454 -34.78815 -33.65363 -31.89462 -30.29210 -29.32123 -28.03788 -27.33259 -26.72548 -24.72239 -23.29936 -22.88119 -21.35630 -20.61769 -20.19644 -17.73829 -17.32672 -16.90467 -16.80070 -16.55999 -15.85535 -15.53107 -14.94536 -14.76670 -14.49263 -14.37564 -14.09794 -13.84808 -13.67628 -13.58629 -13.37964 -13.25868 -12.99164 -12.71394 -12.45808 -12.41374 -12.27390 -11.92025 -11.69805 -11.64121 -11.53850 -11.49039 -11.11418 -11.09318 -10.63811 -10.44902 -10.11818 -10.00110 -9.85234 -9.66879 -9.31739 -9.28244 -8.70437 -8.36001 -7.91612 -7.62163 -6.54799 -5.48431 -2.73393 1.52457 2.41780 2.57510 2.99169 3.48689 3.52370 3.57047 3.62344 3.65418 4.28206 4.39772 4.51091 4.67812 4.73555 4.84966 4.89202 4.91714 4.96641 5.01484 5.10588 5.22187 5.25410 5.28573 5.31738 5.44776 5.50319 5.56365 5.57593 5.70214 5.75572 5.77316 5.83206 5.97718 6.06708 6.36083 6.42126 6.56679 6.61861 6.95440 7.29694 7.39151 7.55569 7.76380 7.90004 8.14699 8.24107 9.14819 9.31526 10.02638 10.86580 11.72120 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.002899 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.372484 B = 9655.331845 C =10638.306540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.234 6.234 3 C -0.045 4.045 4 H 0.093 0.907 5 C -0.149 4.149 6 C -0.126 4.126 7 C 0.511 3.489 8 O -0.518 6.518 9 N -0.721 5.721 10 C 0.136 3.864 11 H 0.112 0.888 12 C -0.168 4.168 13 C 0.490 3.510 14 O -0.432 6.432 15 N -0.609 5.609 16 C 0.102 3.898 17 C 0.166 3.834 18 N -0.587 5.587 19 C -0.177 4.177 20 H 0.069 0.931 21 C -0.005 4.005 22 N -0.928 5.928 23 Si 0.903 3.097 24 H -0.295 1.295 25 H -0.294 1.294 26 H -0.284 1.284 27 C 0.103 3.897 28 C 0.103 3.897 29 H 0.074 0.926 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.403 0.597 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.246 0.754 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.206 14.658 -1.831 25.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.008 6.008 3 C -0.174 4.174 4 H 0.111 0.889 5 C -0.208 4.208 6 C -0.167 4.167 7 C 0.297 3.703 8 O -0.393 6.393 9 N -0.373 5.373 10 C 0.031 3.969 11 H 0.129 0.871 12 C -0.210 4.210 13 C 0.274 3.726 14 O -0.298 6.298 15 N -0.347 5.347 16 C -0.002 4.002 17 C 0.039 3.961 18 N -0.312 5.312 19 C -0.305 4.305 20 H 0.086 0.914 21 C -0.200 4.200 22 N -0.578 5.578 23 Si 0.735 3.265 24 H -0.223 1.223 25 H -0.220 1.220 26 H -0.209 1.209 27 C -0.025 4.025 28 C -0.021 4.021 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.238 0.762 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.054 0.946 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.095 0.905 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -19.614 12.604 -1.981 23.398 hybrid contribution -0.334 0.258 0.498 0.653 sum -19.947 12.862 -1.483 23.781 Atomic orbital electron populations 1.23380 0.95264 1.06247 1.04466 1.87156 1.06227 1.09727 1.97701 1.22859 0.97684 0.95453 1.01384 0.88865 1.22116 1.01533 1.00909 0.96224 1.21542 0.94723 1.03811 0.96638 1.20463 0.82195 0.78719 0.88922 1.90754 1.52732 1.44233 1.51596 1.45992 1.08508 1.64193 1.18657 1.21774 0.95982 0.93166 0.85993 0.87058 1.22831 0.96109 0.97060 1.04959 1.20727 0.89126 0.83334 0.79411 1.91145 1.61842 1.37394 1.39466 1.47873 1.06732 1.12510 1.67628 1.22949 0.79649 0.96261 1.01312 1.22407 0.94501 0.86728 0.92426 1.45645 1.79920 1.05112 1.00572 1.18646 1.37302 0.82788 0.91742 0.91363 1.24530 1.02930 0.96965 0.95557 1.69788 1.58104 1.32087 0.97797 0.86228 0.76972 0.86047 0.77265 1.22344 1.22021 1.20930 1.22985 0.95027 0.91825 0.92631 1.22179 0.85905 0.94311 0.99725 0.90648 0.88332 0.90881 0.91087 0.91563 0.92262 0.87787 0.87452 0.76202 0.88494 0.88001 0.90188 0.94580 0.91901 0.94398 0.94245 0.94463 0.90520 0.90529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 10.45 101.05 1.06 0.06 16 2 S -0.23 -2.64 20.24 -107.50 -2.18 -4.82 16 3 C -0.04 -0.38 2.44 -26.73 -0.07 -0.45 16 4 H 0.09 0.84 7.95 -51.92 -0.41 0.43 16 5 C -0.15 -0.92 9.10 37.16 0.34 -0.58 16 6 C -0.13 -1.02 5.17 -27.88 -0.14 -1.17 16 7 C 0.51 5.67 7.54 -10.99 -0.08 5.58 16 8 O -0.52 -7.40 14.43 5.56 0.08 -7.32 16 9 N -0.72 -7.45 5.12 -52.22 -0.27 -7.72 16 10 C 0.14 1.53 3.53 -66.29 -0.23 1.29 16 11 H 0.11 1.18 7.54 -51.93 -0.39 0.79 16 12 C -0.17 -2.49 6.58 -26.74 -0.18 -2.66 16 13 C 0.49 9.56 7.49 -10.86 -0.08 9.48 16 14 O -0.43 -11.28 13.16 5.56 0.07 -11.20 16 15 N -0.61 -9.84 3.15 -166.64 -0.53 -10.36 16 16 C 0.10 1.83 4.93 -70.15 -0.35 1.48 16 17 C 0.17 3.91 6.36 -2.84 -0.02 3.90 16 18 N -0.59 -15.53 2.17 -177.90 -0.39 -15.91 16 19 C -0.18 -5.29 8.81 -15.06 -0.13 -5.43 16 20 H 0.07 2.05 7.84 -52.49 -0.41 1.64 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 22 N -0.93 -29.13 11.75 55.49 0.65 -28.48 16 23 Si 0.90 24.31 29.56 -169.99 -5.02 19.29 16 24 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 25 H -0.29 -7.98 7.11 56.52 0.40 -7.58 16 26 H -0.28 -7.56 7.11 56.52 0.40 -7.16 16 27 C 0.10 2.14 8.50 -2.97 -0.03 2.11 16 28 C 0.10 1.11 6.97 -3.12 -0.02 1.08 16 29 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 31 H 0.07 0.46 7.14 -51.92 -0.37 0.09 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.34 6.92 -51.93 -0.36 -0.02 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.40 3.69 8.66 -40.82 -0.35 3.33 16 38 H 0.10 1.58 8.09 -51.93 -0.42 1.16 16 39 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.69 7.30 -51.93 -0.38 1.31 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.67 8.08 -51.92 -0.42 0.25 16 47 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 389.85 15.07 5.87 5.87 Total: -1.00 -38.61 389.85 -9.46 -48.07 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.73 Total: -1.88 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: -0.03 Total: 14.47 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.53 Total: -62.48 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: 0.15 Total: -18.52 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -5.02 Total: 19.29 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -2.18 Total: -4.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.61 -9.46 -48.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108538009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.873 kcal (2) G-P(sol) polarization free energy of solvation -38.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.065 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds