Wall clock time and date at job start Wed Apr 1 2020 00:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81396 * 103.00072 * 2 1 4 4 H 1.08998 * 109.47380 * 304.99507 * 3 2 1 5 5 C 1.52997 * 109.47403 * 64.99823 * 3 2 1 6 6 C 1.53007 * 109.47094 * 184.99829 * 3 2 1 7 7 C 1.50699 * 109.46904 * 64.99925 * 6 3 2 8 8 O 1.21278 * 120.00433 * 0.02562 * 7 6 3 9 9 N 1.34773 * 119.99941 * 179.97438 * 7 6 3 10 10 C 1.46502 * 120.00079 * 179.97438 * 9 7 6 11 11 H 1.08997 * 110.85502 * 31.21180 * 10 9 7 12 12 C 1.54625 * 111.00497 * 267.39611 * 10 9 7 13 13 C 1.51287 * 104.25868 * 266.45014 * 12 10 9 14 14 O 1.21278 * 124.94364 * 164.00691 * 13 12 10 15 15 N 1.34415 * 110.11157 * 344.14071 * 13 12 10 16 16 C 1.46503 * 124.34768 * 179.43608 * 15 13 12 17 17 C 1.53947 * 113.74146 * 320.96468 * 16 15 13 18 18 N 1.47809 * 86.03580 * 90.88098 * 17 16 15 19 19 C 1.36935 * 134.45373 * 204.64193 * 18 17 16 20 20 H 1.08002 * 120.00390 * 172.62180 * 19 18 17 21 21 C 1.38813 * 119.99974 * 352.62084 * 19 18 17 22 22 N 1.31614 * 120.00421 * 353.36635 * 21 19 18 23 23 Si 1.86809 * 120.00035 * 173.36727 * 21 19 18 24 24 H 1.48500 * 109.46973 * 94.01450 * 23 21 19 25 25 H 1.48500 * 109.47017 * 214.01502 * 23 21 19 26 26 H 1.48499 * 109.46841 * 334.01387 * 23 21 19 27 27 C 1.47572 * 91.05350 * 24.54864 * 18 17 16 28 28 C 1.46758 * 111.30272 * 359.17272 * 15 13 12 29 29 H 1.09006 * 109.46962 * 60.00026 * 1 2 3 30 30 H 1.08999 * 109.47257 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47030 * 300.00387 * 1 2 3 32 32 H 1.09004 * 109.46774 * 59.99790 * 5 3 2 33 33 H 1.09000 * 109.47242 * 179.97438 * 5 3 2 34 34 H 1.08995 * 109.47181 * 300.00460 * 5 3 2 35 35 H 1.08991 * 109.47069 * 305.00117 * 6 3 2 36 36 H 1.08995 * 109.46778 * 184.99944 * 6 3 2 37 37 H 0.97004 * 120.00020 * 0.02562 * 9 7 6 38 38 H 1.09004 * 110.48373 * 25.34364 * 12 10 9 39 39 H 1.08997 * 110.48647 * 147.84983 * 12 10 9 40 40 H 1.09000 * 112.94296 * 189.36854 * 16 15 13 41 41 H 1.08996 * 113.76619 * 205.14803 * 17 16 15 42 42 H 1.09005 * 113.76893 * 336.53909 * 17 16 15 43 43 H 0.96998 * 120.00502 * 180.02562 * 22 21 19 44 44 H 1.09000 * 113.77013 * 221.15210 * 27 18 17 45 45 H 1.09006 * 113.77067 * 89.75363 * 27 18 17 46 46 H 1.09010 * 110.24725 * 136.27620 * 28 15 13 47 47 H 1.08996 * 110.24768 * 258.19523 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7296 2.2541 -0.8418 5 6 1.7428 2.4016 1.3073 6 6 3.7371 1.9411 -0.1257 7 6 4.1920 1.4269 -1.4672 8 8 3.3841 0.9672 -2.2462 9 7 5.4965 1.4787 -1.8016 10 6 5.9389 0.9783 -3.1055 11 1 5.1618 1.1146 -3.8575 12 6 6.3663 -0.5049 -3.0140 13 6 7.8590 -0.4485 -2.7746 14 8 8.5338 -1.3733 -2.3743 15 7 8.3281 0.7767 -3.0672 16 6 9.7309 1.1779 -2.9356 17 6 10.4260 0.6018 -1.6886 18 7 10.8105 -0.5335 -2.5535 19 6 11.1344 -1.8446 -2.3274 20 1 11.2693 -2.5189 -3.1602 21 6 11.2895 -2.3071 -1.0278 22 7 11.2546 -1.4615 -0.0198 23 14 11.5476 -4.1296 -0.7095 24 1 13.0024 -4.4171 -0.6304 25 1 10.8983 -4.5051 0.5722 26 1 10.9472 -4.9154 -1.8174 27 6 10.7028 0.3124 -3.7579 28 6 7.2555 1.6590 -3.5413 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.2354 1.9149 2.1491 33 1 1.9884 3.4636 1.3074 34 1 0.6636 2.2779 1.3969 35 1 4.2339 1.3804 0.6659 36 1 3.9902 2.9975 -0.0366 37 1 6.1427 1.8467 -1.1787 38 1 5.8620 -0.9966 -2.1821 39 1 6.1509 -1.0223 -3.9489 40 1 9.8803 2.2498 -3.0655 41 1 11.2713 1.1966 -1.3427 42 1 9.7379 0.3319 -0.8873 43 1 11.3634 -1.7846 0.8883 44 1 10.2354 -0.1881 -4.6060 45 1 11.6297 0.8220 -4.0213 46 1 7.3431 2.6419 -3.0782 47 1 7.2935 1.7493 -4.6269 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108538009.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:41 Heat of formation + Delta-G solvation = -13.027852 kcal Electronic energy + Delta-G solvation = -28427.240017 eV Core-core repulsion = 24545.206694 eV Total energy + Delta-G solvation = -3882.033323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.75373 -40.50243 -38.69138 -37.34747 -35.47816 -34.88838 -33.90270 -31.56187 -30.05937 -29.17947 -28.79368 -27.83943 -26.50618 -25.14897 -23.65204 -22.26001 -22.09154 -21.31097 -19.24136 -18.69019 -18.16765 -17.85498 -17.56833 -17.22939 -16.81156 -16.39216 -16.07866 -15.87903 -15.47686 -15.27514 -15.19426 -14.95972 -14.58515 -14.54203 -14.25688 -14.14142 -13.93278 -13.58920 -13.40670 -13.26783 -13.06347 -13.01398 -12.85861 -12.78868 -12.63656 -12.51621 -12.39164 -12.31976 -12.13520 -11.98992 -11.58358 -11.38825 -10.84974 -10.75753 -10.63944 -10.40510 -9.93810 -9.35268 -8.64269 -8.47700 -7.76870 -4.98631 0.83638 1.37587 1.41711 1.48978 1.71211 1.74926 1.97559 2.18368 2.25132 2.55551 3.42486 3.47889 3.52439 3.64112 3.65068 3.76409 3.89857 3.98161 4.24326 4.27025 4.29525 4.32925 4.36079 4.47363 4.58227 4.64424 4.67971 4.69721 4.74019 4.78475 4.84244 4.87634 4.89375 4.95457 4.97691 5.02260 5.27582 5.28412 5.29748 5.53642 5.59521 6.04932 6.12909 6.50759 6.57710 7.07281 7.31737 7.68054 7.79801 8.72723 9.43298 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014100 B = 0.002899 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.372484 B = 9655.331845 C =10638.306540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.324 6.324 3 C -0.027 4.027 4 H 0.089 0.911 5 C -0.143 4.143 6 C -0.124 4.124 7 C 0.509 3.491 8 O -0.553 6.553 9 N -0.717 5.717 10 C 0.149 3.851 11 H 0.127 0.873 12 C -0.159 4.159 13 C 0.480 3.520 14 O -0.513 6.513 15 N -0.605 5.605 16 C 0.136 3.864 17 C 0.162 3.838 18 N -0.618 5.618 19 C -0.171 4.171 20 H 0.055 0.945 21 C -0.065 4.065 22 N -0.956 5.956 23 Si 0.955 3.045 24 H -0.285 1.285 25 H -0.300 1.300 26 H -0.283 1.283 27 C 0.101 3.899 28 C 0.107 3.893 29 H 0.078 0.922 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.411 0.589 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.143 0.857 41 H 0.031 0.969 42 H 0.020 0.980 43 H 0.237 0.763 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.113 0.887 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.529 18.104 -3.086 28.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.099 6.099 3 C -0.156 4.156 4 H 0.107 0.893 5 C -0.202 4.202 6 C -0.164 4.164 7 C 0.296 3.704 8 O -0.430 6.430 9 N -0.369 5.369 10 C 0.043 3.957 11 H 0.145 0.855 12 C -0.201 4.201 13 C 0.266 3.734 14 O -0.386 6.386 15 N -0.341 5.341 16 C 0.032 3.968 17 C 0.035 3.965 18 N -0.344 5.344 19 C -0.300 4.300 20 H 0.073 0.927 21 C -0.256 4.256 22 N -0.608 5.608 23 Si 0.786 3.214 24 H -0.213 1.213 25 H -0.228 1.228 26 H -0.209 1.209 27 C -0.025 4.025 28 C -0.015 4.015 29 H 0.097 0.903 30 H 0.119 0.881 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.163 0.837 37 H 0.247 0.753 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.160 0.840 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.131 0.869 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -20.955 16.130 -3.284 26.648 hybrid contribution 0.002 -0.766 0.792 1.102 sum -20.953 15.364 -2.492 26.102 Atomic orbital electron populations 1.23351 0.91831 1.06793 1.05504 1.87435 1.10331 1.14179 1.97906 1.22878 0.97871 0.92326 1.02516 0.89267 1.22081 1.01739 1.01859 0.94515 1.21637 0.94386 1.05821 0.94577 1.20972 0.81967 0.77907 0.89543 1.90742 1.53633 1.45721 1.52898 1.46001 1.08596 1.63713 1.18609 1.21733 0.96893 0.90254 0.86843 0.85533 1.22745 0.92721 1.00184 1.04490 1.21476 0.90655 0.83349 0.77905 1.91098 1.64102 1.40212 1.43172 1.47975 1.07343 1.12447 1.66308 1.22600 0.79665 0.98685 0.95878 1.22356 0.94264 0.86480 0.93374 1.45962 1.79782 1.04935 1.03730 1.18788 1.35018 0.84921 0.91298 0.92666 1.25148 1.04556 1.00244 0.95691 1.69939 1.60275 1.33114 0.97449 0.85387 0.77145 0.82373 0.76457 1.21265 1.22755 1.20928 1.23230 0.96843 0.91376 0.91096 1.22548 0.82910 0.94322 1.01749 0.90254 0.88110 0.89060 0.91522 0.89278 0.91797 0.88008 0.83689 0.75336 0.90731 0.86935 0.84016 0.95177 0.96134 0.95356 0.94556 0.92032 0.86861 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.45 113.37 1.19 -0.42 16 2 S -0.32 -7.34 20.24 -56.49 -1.14 -8.49 16 3 C -0.03 -0.42 2.44 30.60 0.07 -0.34 16 4 H 0.09 1.46 7.95 -2.39 -0.02 1.44 16 5 C -0.14 -1.41 9.10 71.98 0.66 -0.76 16 6 C -0.12 -1.74 5.17 29.85 0.15 -1.59 16 7 C 0.51 10.40 7.54 87.66 0.66 11.06 16 8 O -0.55 -15.22 14.43 -3.02 -0.04 -15.26 16 9 N -0.72 -13.06 5.12 -437.53 -2.24 -15.30 16 10 C 0.15 2.89 3.53 46.05 0.16 3.06 16 11 H 0.13 2.23 7.54 -2.39 -0.02 2.22 16 12 C -0.16 -4.66 6.58 30.59 0.20 -4.46 16 13 C 0.48 18.74 7.49 87.90 0.66 19.40 16 14 O -0.51 -27.97 13.16 -3.02 -0.04 -28.01 16 15 N -0.60 -17.92 3.15 -799.71 -2.52 -20.44 16 16 C 0.14 4.44 4.93 46.75 0.23 4.67 16 17 C 0.16 7.64 6.36 86.44 0.55 8.19 16 18 N -0.62 -33.12 2.17 -716.74 -1.56 -34.68 16 19 C -0.17 -10.55 8.81 84.03 0.74 -9.81 16 20 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 22 N -0.96 -62.44 11.75 21.65 0.25 -62.19 16 23 Si 0.95 51.96 29.56 68.60 2.03 53.99 16 24 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 25 H -0.30 -16.50 7.11 99.48 0.71 -15.79 16 26 H -0.28 -15.18 7.11 99.48 0.71 -14.47 16 27 C 0.10 3.99 8.50 86.49 0.74 4.73 16 28 C 0.11 1.76 6.97 86.84 0.61 2.36 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.10 1.43 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.01 7.14 -2.39 -0.02 1.00 16 32 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.58 6.92 -2.39 -0.02 0.57 16 35 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.15 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.41 6.37 8.66 -92.71 -0.80 5.56 16 38 H 0.07 2.52 8.09 -2.39 -0.02 2.50 16 39 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.14 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.02 1.13 7.30 -2.38 -0.02 1.11 16 43 H 0.24 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 46 H 0.11 1.19 8.08 -2.38 -0.02 1.17 16 47 H 0.11 1.29 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -92.29 389.85 1.98 -90.31 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.16 Total: 7.61 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 7.08 Total: 32.45 kcal Atomic # 7 Polarization: -126.54 SS G_CDS: -6.07 Total: -132.60 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -0.08 Total: -43.27 kcal Atomic # 14 Polarization: 51.96 SS G_CDS: 2.03 Total: 53.99 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -1.14 Total: -8.49 kcal Total: -92.29 1.98 -90.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108538009.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.285 kcal (2) G-P(sol) polarization free energy of solvation -92.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds