Wall clock time and date at job start Wed Apr 1 2020 01:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46820 * 2 1 4 4 C 1.34778 * 119.99891 * 180.02562 * 3 2 1 5 5 O 1.21279 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.50706 * 119.99854 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.46643 * 179.97438 * 6 4 3 8 8 C 1.50656 * 110.99972 * 69.88021 * 7 6 4 9 9 H 1.08999 * 115.87541 * 295.93252 * 8 7 6 10 10 C 1.55846 * 101.73249 * 169.70731 * 8 7 6 11 11 C 1.58505 * 102.82721 * 327.01833 * 10 8 7 12 12 C 1.50657 * 110.35899 * 177.63149 * 7 6 4 13 13 H 1.09005 * 115.87810 * 63.57668 * 12 7 6 14 14 C 1.55844 * 101.03055 * 297.87520 * 12 7 6 15 15 H 1.09002 * 110.74752 * 85.57892 * 14 12 7 16 16 N 1.46496 * 110.61419 * 208.49908 * 14 12 7 17 17 C 1.34783 * 120.00040 * 270.05061 * 16 14 12 18 18 O 1.21279 * 119.99695 * 359.97438 * 17 16 14 19 19 C 1.50699 * 120.00098 * 180.02562 * 17 16 14 20 20 S 1.81001 * 109.46955 * 180.02562 * 19 17 16 21 21 C 1.76202 * 99.99804 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00186 * 359.97438 * 21 20 19 23 23 C 1.38801 * 119.99998 * 180.02562 * 21 20 19 24 24 N 1.31633 * 119.99829 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00200 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47412 * 89.99444 * 25 23 21 27 27 H 1.48503 * 109.46939 * 209.99722 * 25 23 21 28 28 H 1.48500 * 109.46759 * 329.99238 * 25 23 21 29 29 C 1.54835 * 103.51876 * 327.00650 * 14 12 7 30 30 H 1.09011 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47176 * 299.99942 * 1 2 3 32 32 H 1.08998 * 109.47637 * 60.00316 * 1 2 3 33 33 H 1.08999 * 109.47176 * 240.00058 * 2 1 3 34 34 H 1.08999 * 109.47469 * 120.00207 * 2 1 3 35 35 H 0.97000 * 120.00288 * 359.97438 * 3 2 1 36 36 H 1.09001 * 109.46794 * 60.00811 * 6 4 3 37 37 H 1.08998 * 109.47059 * 300.00422 * 6 4 3 38 38 H 1.08992 * 110.61436 * 86.03949 * 10 8 7 39 39 H 1.09011 * 110.61085 * 209.02377 * 10 8 7 40 40 H 1.08999 * 111.16355 * 241.62432 * 11 10 8 41 41 H 1.09003 * 110.72885 * 118.17994 * 11 10 8 42 42 H 0.96994 * 120.00291 * 90.05131 * 16 14 12 43 43 H 1.09003 * 109.46779 * 299.99804 * 19 17 16 44 44 H 1.09000 * 109.47191 * 59.99818 * 19 17 16 45 45 H 0.97004 * 119.99717 * 180.02562 * 24 23 21 46 46 H 1.09003 * 110.61357 * 241.49007 * 29 14 12 47 47 H 1.09006 * 110.61154 * 118.50614 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 3.3433 1.6275 -0.0005 5 8 4.1314 0.7057 -0.0015 6 6 3.8456 3.0485 -0.0011 7 7 5.3146 3.0484 -0.0010 8 6 5.8546 2.5640 -1.3214 9 1 5.6246 1.5301 -1.5789 10 6 7.3697 2.9033 -1.1878 11 6 7.3588 4.2229 -0.3097 12 6 5.8387 4.4596 -0.0599 13 1 5.5950 5.0937 0.7926 14 6 5.2721 4.9311 -1.4330 15 1 4.2560 5.3097 -1.3220 16 7 6.1393 5.9522 -2.0257 17 6 5.9257 7.2558 -1.7581 18 8 5.0151 7.5834 -1.0271 19 6 6.8174 8.3063 -2.3683 20 16 6.2794 9.9458 -1.8218 21 6 7.4595 10.9503 -2.6605 22 1 8.2141 10.4918 -3.2824 23 6 7.4199 12.3307 -2.5210 24 7 6.5004 12.8894 -1.7626 25 14 8.6713 13.3956 -3.4095 26 1 8.1457 13.7646 -4.7484 27 1 8.9226 14.6277 -2.6195 28 1 9.9406 12.6409 -3.5666 29 6 5.2828 3.6421 -2.2908 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.3879 2.1185 -0.0004 36 1 3.4826 3.5624 0.8890 37 1 3.4819 3.5620 -0.8911 38 1 7.9010 2.0956 -0.6845 39 1 7.8067 3.0999 -2.1670 40 1 7.7933 5.0614 -0.8540 41 1 7.8823 4.0634 0.6329 42 1 6.8673 5.6902 -2.6107 43 1 7.8467 8.1377 -2.0515 44 1 6.7574 8.2473 -3.4550 45 1 6.4725 13.8542 -1.6655 46 1 5.9334 3.7630 -3.1570 47 1 4.2717 3.3802 -2.6026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108947135.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:45 Heat of formation + Delta-G solvation = -68.936554 kcal Electronic energy + Delta-G solvation = -27589.119914 eV Core-core repulsion = 23704.662207 eV Total energy + Delta-G solvation = -3884.457706 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.41641 -40.56031 -39.82738 -36.26533 -35.31456 -34.57183 -33.28327 -31.54311 -31.37858 -30.70139 -28.94381 -27.64096 -27.19329 -23.71339 -23.26329 -22.19610 -21.87139 -20.78686 -20.57914 -19.81613 -18.10714 -17.94852 -17.50128 -17.34103 -16.88236 -16.85855 -16.59810 -16.39916 -15.99238 -15.86468 -15.25177 -14.83985 -14.67751 -14.53357 -14.18070 -13.79263 -13.67032 -13.49022 -13.29798 -13.28469 -13.15252 -12.88928 -12.78012 -12.69246 -12.68224 -12.64717 -12.57120 -12.33747 -11.88009 -11.81149 -11.71330 -11.19440 -11.13419 -10.94194 -10.83892 -10.35952 -10.25839 -10.08887 -9.43368 -8.64485 -8.33936 -6.11140 1.27963 1.42752 1.47766 1.57852 1.61818 1.62728 2.07434 2.25352 2.30010 2.92504 3.00366 3.32918 3.46467 3.54963 3.74136 3.81536 3.93681 4.02888 4.11354 4.15468 4.16092 4.22510 4.31759 4.32863 4.35291 4.38181 4.50718 4.51480 4.53474 4.68915 4.77225 4.90772 4.93905 5.01283 5.05115 5.12470 5.21451 5.24105 5.25934 5.43055 5.45648 5.48605 5.64368 5.82522 6.20727 6.50101 6.55859 7.07807 7.25401 7.26374 8.75058 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.002081 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.004097 B =13453.411414 C =14200.265177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.113 3.887 3 N -0.724 5.724 4 C 0.516 3.484 5 O -0.565 6.565 6 C 0.007 3.993 7 N -0.482 5.482 8 C 0.053 3.947 9 H 0.114 0.886 10 C -0.108 4.108 11 C -0.114 4.114 12 C 0.034 3.966 13 H 0.101 0.899 14 C 0.117 3.883 15 H 0.079 0.921 16 N -0.698 5.698 17 C 0.537 3.463 18 O -0.561 6.561 19 C -0.131 4.131 20 S -0.148 6.148 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.013 3.987 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.268 1.268 27 H -0.279 1.279 28 H -0.258 1.258 29 C -0.152 4.152 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.416 0.584 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.101 0.899 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.233 -26.736 -1.277 27.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 N -0.378 5.378 4 C 0.302 3.698 5 O -0.443 6.443 6 C -0.124 4.124 7 N -0.205 5.205 8 C -0.055 4.055 9 H 0.132 0.868 10 C -0.146 4.146 11 C -0.153 4.153 12 C -0.075 4.075 13 H 0.119 0.881 14 C 0.010 3.990 15 H 0.097 0.903 16 N -0.352 5.352 17 C 0.323 3.677 18 O -0.439 6.439 19 C -0.282 4.282 20 S 0.079 5.921 21 C -0.694 4.694 22 H 0.101 0.899 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.193 1.193 27 H -0.204 1.204 28 H -0.182 1.182 29 C -0.191 4.191 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.072 0.928 35 H 0.250 0.750 36 H 0.131 0.869 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.254 0.746 43 H 0.127 0.873 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.120 0.880 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.112 -27.108 0.539 28.030 hybrid contribution 1.074 1.265 -1.804 2.451 sum -6.039 -25.843 -1.265 26.569 Atomic orbital electron populations 1.21961 0.92117 1.04128 1.03233 1.21332 0.96006 0.82324 1.01351 1.46033 1.06621 1.09907 1.75248 1.20692 0.82561 0.91254 0.75255 1.90673 1.56246 1.47183 1.50191 1.22375 0.91213 0.93866 1.04995 1.67728 1.06026 1.13948 1.32752 1.24460 0.95888 0.98254 0.86903 0.86816 1.23227 0.94255 0.96666 1.00447 1.23184 0.93560 0.97940 1.00567 1.24777 0.97103 0.89226 0.96414 0.88103 1.22667 0.94638 0.88001 0.93688 0.90283 1.45762 1.34738 1.03948 1.50782 1.20022 0.83892 0.83654 0.80091 1.90686 1.33230 1.81869 1.38121 1.23380 1.02896 0.97131 1.04792 1.85547 1.44976 0.96164 1.65443 1.23210 1.17789 0.94273 1.34115 0.89940 1.26105 0.98391 0.98619 0.96025 1.70181 1.34730 1.11752 1.38060 0.84978 0.78072 0.77149 0.77938 1.19349 1.20393 1.18227 1.23526 1.03393 0.92934 0.99237 0.89825 0.91341 0.91199 0.92440 0.92778 0.74953 0.86899 0.89455 0.91231 0.89100 0.90257 0.91611 0.74636 0.87261 0.87290 0.92040 0.88014 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 10.03 71.98 0.72 -0.21 16 2 C 0.11 1.36 6.39 86.38 0.55 1.91 16 3 N -0.72 -9.35 5.56 -463.06 -2.57 -11.92 16 4 C 0.52 9.97 7.63 87.66 0.67 10.64 16 5 O -0.56 -15.35 14.86 -3.03 -0.04 -15.40 16 6 C 0.01 0.12 5.07 85.56 0.43 0.56 16 7 N -0.48 -10.06 5.35 -808.80 -4.33 -14.39 16 8 C 0.05 0.94 4.23 46.15 0.20 1.14 16 9 H 0.11 2.30 6.94 -2.39 -0.02 2.29 16 10 C -0.11 -1.74 6.63 33.55 0.22 -1.52 16 11 C -0.11 -2.22 6.49 33.55 0.22 -2.00 16 12 C 0.03 0.75 4.77 46.14 0.22 0.97 16 13 H 0.10 2.58 8.14 -2.38 -0.02 2.56 16 14 C 0.12 2.43 2.32 46.60 0.11 2.53 16 15 H 0.08 1.94 6.76 -2.39 -0.02 1.92 16 16 N -0.70 -15.85 3.67 -434.94 -1.60 -17.45 16 17 C 0.54 18.39 7.85 87.66 0.69 19.07 16 18 O -0.56 -24.35 15.52 -3.03 -0.05 -24.40 16 19 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 20 S -0.15 -8.03 20.57 -56.49 -1.16 -9.20 16 21 C -0.55 -30.66 9.50 67.95 0.65 -30.01 16 22 H 0.08 4.29 7.80 -2.91 -0.02 4.27 16 23 C 0.01 0.75 5.49 84.86 0.47 1.22 16 24 N -0.91 -55.36 13.22 21.65 0.29 -55.07 16 25 Si 1.00 43.09 29.55 68.60 2.03 45.12 16 26 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 27 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 28 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 29 C -0.15 -2.29 5.38 32.21 0.17 -2.12 16 30 H 0.08 0.36 8.14 -2.38 -0.02 0.35 16 31 H 0.07 0.35 8.14 -2.39 -0.02 0.34 16 32 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.41 3.11 8.47 -92.71 -0.79 2.33 16 36 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.09 1.31 4.79 -2.39 -0.01 1.30 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.07 7.79 -2.38 -0.02 1.05 16 40 H 0.08 1.49 6.38 -2.39 -0.02 1.48 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.42 6.78 7.92 -92.71 -0.73 6.05 16 43 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 44 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 45 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 46 H 0.10 1.21 7.36 -2.39 -0.02 1.19 16 47 H 0.08 1.16 7.19 -2.38 -0.02 1.14 16 Total: -1.00 -79.80 386.84 -2.21 -82.01 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -0.52 Total: 22.98 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: 5.75 Total: -2.29 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -8.21 Total: -98.84 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.09 Total: -39.79 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.20 kcal Total: -79.80 -2.21 -82.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108947135.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.071 kcal (2) G-P(sol) polarization free energy of solvation -79.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds