Wall clock time and date at job start Wed Apr 1 2020 00:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 120.00091 * 2 1 4 4 O 1.21278 * 119.99829 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00155 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47009 * 59.99561 * 5 3 2 7 7 C 1.53005 * 109.47077 * 300.00106 * 5 3 2 8 8 N 1.46892 * 109.47329 * 180.02562 * 5 3 2 9 9 C 1.50654 * 111.00406 * 182.71555 * 8 5 3 10 10 H 1.09005 * 116.47716 * 296.29610 * 9 8 5 11 11 C 1.55846 * 101.02840 * 170.23697 * 9 8 5 12 12 C 1.54836 * 103.52169 * 327.00861 * 11 9 8 13 13 C 1.50653 * 111.00274 * 290.80917 * 8 5 3 14 14 H 1.08998 * 116.48115 * 63.70088 * 13 8 5 15 15 C 1.55850 * 101.02331 * 297.65160 * 13 8 5 16 16 H 1.09005 * 110.61426 * 85.51446 * 15 13 8 17 17 N 1.46500 * 110.74600 * 208.43058 * 15 13 8 18 18 C 1.34776 * 120.00181 * 270.98244 * 17 15 13 19 19 O 1.21277 * 120.00065 * 359.97438 * 18 17 15 20 20 C 1.50702 * 120.00109 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47006 * 179.97438 * 20 18 17 22 22 C 1.76199 * 99.99822 * 180.02562 * 21 20 18 23 23 H 1.08008 * 120.00188 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00258 * 180.02562 * 22 21 20 25 25 N 1.31626 * 120.00161 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99652 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46982 * 90.00122 * 26 24 22 28 28 H 1.48495 * 109.46971 * 210.00188 * 26 24 22 29 29 H 1.48494 * 109.47231 * 330.00126 * 26 24 22 30 30 C 1.54836 * 103.52107 * 327.00387 * 15 13 8 31 31 H 1.08996 * 109.47141 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47231 * 299.99873 * 1 2 3 33 33 H 1.09000 * 109.47134 * 59.99827 * 1 2 3 34 34 H 0.97001 * 120.00020 * 180.02562 * 2 1 3 35 35 H 1.08997 * 109.47188 * 63.21425 * 7 5 3 36 36 H 1.08995 * 109.47203 * 183.21370 * 7 5 3 37 37 H 1.08999 * 109.46662 * 303.21585 * 7 5 3 38 38 H 1.08994 * 110.61007 * 208.49248 * 11 9 8 39 39 H 1.09008 * 110.74633 * 85.58052 * 11 9 8 40 40 H 1.09003 * 110.60974 * 241.49277 * 12 11 9 41 41 H 1.09002 * 110.61112 * 118.50733 * 12 11 9 42 42 H 0.97006 * 119.99919 * 90.97781 * 17 15 13 43 43 H 1.08995 * 109.46798 * 300.00249 * 20 18 17 44 44 H 1.09006 * 109.46972 * 59.99916 * 20 18 17 45 45 H 0.97003 * 119.99759 * 179.97438 * 25 24 22 46 46 H 1.08998 * 110.61478 * 118.50552 * 30 15 13 47 47 H 1.09001 * 110.61286 * 241.49340 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0089 0.6535 -0.8908 7 6 4.1564 0.4457 1.2483 8 7 4.1356 2.5521 0.0002 9 6 5.6401 2.5930 -0.0670 10 1 6.1762 2.1597 0.7774 11 6 5.8864 4.1121 -0.3128 12 6 4.6651 4.5444 -1.1607 13 6 3.8440 3.2287 -1.3140 14 1 2.7928 3.3572 -1.5717 15 6 4.6741 2.3460 -2.2942 16 1 4.0979 1.4757 -2.6087 17 7 5.1039 3.1258 -3.4575 18 6 4.3134 3.2031 -4.5464 19 8 3.2464 2.6268 -4.5633 20 6 4.7553 4.0058 -5.7429 21 16 3.4878 3.9148 -7.0319 22 6 4.2432 4.9099 -8.2744 23 1 5.2107 5.3554 -8.0953 24 6 3.5950 5.1213 -9.4834 25 7 4.1591 5.8650 -10.4114 26 14 1.9221 4.3501 -9.7935 27 1 0.8566 5.2816 -9.3435 28 1 1.7629 4.0800 -11.2450 29 1 1.8168 3.0758 -9.0384 30 6 5.8954 1.9137 -1.4463 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.9500 -0.8401 -0.0004 35 1 3.8409 -0.5972 1.2199 36 1 5.2448 0.4953 1.2772 37 1 3.7471 0.9250 2.1376 38 1 6.8122 4.2659 -0.8670 39 1 5.9105 4.6570 0.6310 40 1 4.9856 4.9124 -2.1354 41 1 4.0823 5.3015 -0.6360 42 1 5.9574 3.5865 -3.4441 43 1 4.9014 5.0452 -5.4492 44 1 5.6922 3.6012 -6.1259 45 1 3.7062 6.0124 -11.2565 46 1 5.9246 0.8293 -1.3404 47 1 6.8203 2.2820 -1.8900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108951863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:28 Heat of formation + Delta-G solvation = -36.155275 kcal Electronic energy + Delta-G solvation = -28517.912055 eV Core-core repulsion = 24634.875851 eV Total energy + Delta-G solvation = -3883.036203 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.75942 -39.58768 -38.69713 -34.80920 -34.59131 -33.44352 -32.43861 -30.54741 -29.85560 -29.38487 -27.63011 -26.98430 -25.60210 -24.05422 -22.38439 -21.24575 -20.71568 -19.71637 -19.64931 -17.89819 -17.57069 -17.12046 -16.63622 -16.09434 -15.90256 -15.46209 -15.33872 -14.96491 -14.78833 -14.38783 -14.02906 -13.79773 -13.37248 -13.19923 -13.05177 -12.96378 -12.82471 -12.79743 -12.59969 -12.53269 -12.30701 -12.06623 -11.89961 -11.77440 -11.64537 -11.26851 -11.12266 -11.00631 -10.89429 -10.60634 -10.34709 -9.90424 -9.85809 -9.55611 -9.37270 -9.33262 -9.00121 -8.51676 -8.49925 -6.91643 -6.28991 -4.00567 2.49317 2.74321 2.84263 2.94831 3.26967 3.34059 3.50558 3.55632 3.71512 4.21657 4.27436 4.33329 4.44539 4.46289 4.65931 4.70903 4.77654 4.87615 4.90778 4.95654 5.03196 5.04572 5.10220 5.14514 5.24270 5.26938 5.28036 5.35022 5.48733 5.53673 5.56039 5.58514 5.71852 5.76055 5.84724 5.90834 6.00528 6.01261 6.10840 6.18467 6.33515 6.56945 6.63623 7.23899 7.58324 7.94139 8.06576 8.41461 8.48105 9.17337 10.80286 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.002892 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.842491 B = 9680.718196 C =10972.504690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.518 3.482 4 O -0.515 6.515 5 C 0.038 3.962 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.466 5.466 9 C 0.046 3.954 10 H 0.118 0.882 11 C -0.114 4.114 12 C -0.116 4.116 13 C 0.046 3.954 14 H 0.125 0.875 15 C 0.114 3.886 16 H 0.089 0.911 17 N -0.723 5.723 18 C 0.530 3.470 19 O -0.517 6.517 20 C -0.124 4.124 21 S -0.141 6.141 22 C -0.521 4.521 23 H 0.088 0.912 24 C 0.096 3.904 25 N -0.881 5.881 26 Si 0.857 3.143 27 H -0.267 1.267 28 H -0.274 1.274 29 H -0.236 1.236 30 C -0.163 4.163 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.399 0.601 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.271 0.729 46 H 0.076 0.924 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.203 -12.915 26.356 29.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.392 5.392 3 C 0.303 3.697 4 O -0.389 6.389 5 C -0.074 4.074 6 H 0.095 0.905 7 C -0.198 4.198 8 N -0.189 5.189 9 C -0.062 4.062 10 H 0.136 0.864 11 C -0.151 4.151 12 C -0.155 4.155 13 C -0.063 4.063 14 H 0.143 0.857 15 C 0.006 3.994 16 H 0.107 0.893 17 N -0.377 5.377 18 C 0.316 3.684 19 O -0.391 6.391 20 C -0.274 4.274 21 S 0.085 5.915 22 C -0.669 4.669 23 H 0.106 0.894 24 C -0.113 4.113 25 N -0.517 5.517 26 Si 0.681 3.319 27 H -0.192 1.192 28 H -0.199 1.199 29 H -0.160 1.160 30 C -0.202 4.202 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.234 0.766 43 H 0.115 0.885 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.095 0.905 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.659 -12.753 26.669 29.608 hybrid contribution 1.508 -0.232 -1.189 1.934 sum 3.167 -12.985 25.480 28.773 Atomic orbital electron populations 1.21523 0.79426 1.02115 1.02499 1.45766 1.07812 1.08580 1.77014 1.20422 0.89565 0.83743 0.75950 1.90722 1.69893 1.31039 1.47236 1.21869 0.92431 0.92802 1.00316 0.90546 1.21788 1.01987 0.99279 0.96729 1.67649 1.07398 1.11466 1.32435 1.24512 0.89065 0.96892 0.95769 0.86378 1.22607 0.97955 0.94086 1.00501 1.22578 0.95991 0.96729 1.00164 1.24877 1.00461 0.94513 0.86425 0.85684 1.22623 0.95277 0.95241 0.86243 0.89329 1.45970 1.23089 1.53633 1.15008 1.20324 0.84193 0.80691 0.83152 1.90703 1.22023 1.44832 1.81536 1.23277 1.04793 1.02505 0.96864 1.84808 1.26861 1.68382 1.11406 1.22318 1.08686 1.35008 1.00869 0.89395 1.24709 0.97942 0.93952 0.94693 1.69938 1.38694 1.36857 1.06236 0.86736 0.84108 0.82272 0.78748 1.19164 1.19940 1.15973 1.23565 0.98639 1.01264 0.96747 0.90744 0.92289 0.92020 0.76765 0.91785 0.91231 0.91206 0.91200 0.90941 0.90643 0.90928 0.76554 0.88479 0.88530 0.91938 0.90543 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.70 10.70 59.84 0.64 1.34 16 2 N -0.74 -6.22 5.62 -67.08 -0.38 -6.60 16 3 C 0.52 6.06 6.95 -10.98 -0.08 5.98 16 4 O -0.52 -8.36 14.82 5.56 0.08 -8.28 16 5 C 0.04 0.35 1.99 -68.87 -0.14 0.21 16 6 H 0.08 0.66 4.87 -51.93 -0.25 0.41 16 7 C -0.14 -0.83 9.07 37.16 0.34 -0.49 16 8 N -0.47 -4.86 5.07 -199.16 -1.01 -5.87 16 9 C 0.05 0.35 4.25 -62.56 -0.27 0.08 16 10 H 0.12 0.67 7.01 -51.93 -0.36 0.30 16 11 C -0.11 -0.91 6.43 -24.24 -0.16 -1.06 16 12 C -0.12 -1.26 6.32 -24.25 -0.15 -1.42 16 13 C 0.05 0.59 4.11 -62.56 -0.26 0.33 16 14 H 0.13 2.08 6.92 -51.93 -0.36 1.72 16 15 C 0.11 1.31 2.31 -65.44 -0.15 1.16 16 16 H 0.09 1.22 6.67 -51.93 -0.35 0.87 16 17 N -0.72 -9.07 3.70 -51.40 -0.19 -9.26 16 18 C 0.53 9.38 7.85 -10.98 -0.09 9.30 16 19 O -0.52 -11.24 15.54 5.56 0.09 -11.15 16 20 C -0.12 -2.39 6.16 36.01 0.22 -2.16 16 21 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 22 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 23 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 24 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 25 N -0.88 -26.71 13.97 55.49 0.78 -25.93 16 26 Si 0.86 21.98 27.74 -169.99 -4.71 17.26 16 27 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 29 H -0.24 -6.04 6.74 56.52 0.38 -5.66 16 30 C -0.16 -1.25 5.39 -24.24 -0.13 -1.38 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.40 2.06 8.31 -40.82 -0.34 1.72 16 35 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 36 H 0.07 0.32 6.52 -51.93 -0.34 -0.01 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.46 7.82 -51.93 -0.41 0.05 16 39 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.08 0.82 6.43 -51.93 -0.33 0.49 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.40 3.88 7.95 -40.82 -0.32 3.56 16 43 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 44 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 45 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 46 H 0.08 0.51 7.35 -51.93 -0.38 0.13 16 47 H 0.08 0.56 7.37 -51.93 -0.38 0.18 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -37.22 379.35 -8.81 -46.03 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.18 Total: 3.84 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: 0.00 Total: -0.17 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.80 Total: -47.66 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.17 Total: -19.43 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -37.22 -8.81 -46.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108951863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.874 kcal (2) G-P(sol) polarization free energy of solvation -37.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds