Wall clock time and date at job start Wed Apr 1 2020 00:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 120.00091 * 2 1 4 4 O 1.21278 * 119.99829 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00155 * 180.02562 * 3 2 1 6 6 H 1.09000 * 109.47009 * 59.99561 * 5 3 2 7 7 C 1.53005 * 109.47077 * 300.00106 * 5 3 2 8 8 N 1.46892 * 109.47329 * 180.02562 * 5 3 2 9 9 C 1.50654 * 111.00406 * 182.71555 * 8 5 3 10 10 H 1.09005 * 116.47716 * 296.29610 * 9 8 5 11 11 C 1.55846 * 101.02840 * 170.23697 * 9 8 5 12 12 C 1.54836 * 103.52169 * 327.00861 * 11 9 8 13 13 C 1.50653 * 111.00274 * 290.80917 * 8 5 3 14 14 H 1.08998 * 116.48115 * 63.70088 * 13 8 5 15 15 C 1.55850 * 101.02331 * 297.65160 * 13 8 5 16 16 H 1.09005 * 110.61426 * 85.51446 * 15 13 8 17 17 N 1.46500 * 110.74600 * 208.43058 * 15 13 8 18 18 C 1.34776 * 120.00181 * 270.98244 * 17 15 13 19 19 O 1.21277 * 120.00065 * 359.97438 * 18 17 15 20 20 C 1.50702 * 120.00109 * 179.97438 * 18 17 15 21 21 S 1.81002 * 109.47006 * 179.97438 * 20 18 17 22 22 C 1.76199 * 99.99822 * 180.02562 * 21 20 18 23 23 H 1.08008 * 120.00188 * 0.02562 * 22 21 20 24 24 C 1.38801 * 120.00258 * 180.02562 * 22 21 20 25 25 N 1.31626 * 120.00161 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99652 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46982 * 90.00122 * 26 24 22 28 28 H 1.48495 * 109.46971 * 210.00188 * 26 24 22 29 29 H 1.48494 * 109.47231 * 330.00126 * 26 24 22 30 30 C 1.54836 * 103.52107 * 327.00387 * 15 13 8 31 31 H 1.08996 * 109.47141 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47231 * 299.99873 * 1 2 3 33 33 H 1.09000 * 109.47134 * 59.99827 * 1 2 3 34 34 H 0.97001 * 120.00020 * 180.02562 * 2 1 3 35 35 H 1.08997 * 109.47188 * 63.21425 * 7 5 3 36 36 H 1.08995 * 109.47203 * 183.21370 * 7 5 3 37 37 H 1.08999 * 109.46662 * 303.21585 * 7 5 3 38 38 H 1.08994 * 110.61007 * 208.49248 * 11 9 8 39 39 H 1.09008 * 110.74633 * 85.58052 * 11 9 8 40 40 H 1.09003 * 110.60974 * 241.49277 * 12 11 9 41 41 H 1.09002 * 110.61112 * 118.50733 * 12 11 9 42 42 H 0.97006 * 119.99919 * 90.97781 * 17 15 13 43 43 H 1.08995 * 109.46798 * 300.00249 * 20 18 17 44 44 H 1.09006 * 109.46972 * 59.99916 * 20 18 17 45 45 H 0.97003 * 119.99759 * 179.97438 * 25 24 22 46 46 H 1.08998 * 110.61478 * 118.50552 * 30 15 13 47 47 H 1.09001 * 110.61286 * 241.49340 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 -0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0089 0.6535 -0.8908 7 6 4.1564 0.4457 1.2483 8 7 4.1356 2.5521 0.0002 9 6 5.6401 2.5930 -0.0670 10 1 6.1762 2.1597 0.7774 11 6 5.8864 4.1121 -0.3128 12 6 4.6651 4.5444 -1.1607 13 6 3.8440 3.2287 -1.3140 14 1 2.7928 3.3572 -1.5717 15 6 4.6741 2.3460 -2.2942 16 1 4.0979 1.4757 -2.6087 17 7 5.1039 3.1258 -3.4575 18 6 4.3134 3.2031 -4.5464 19 8 3.2464 2.6268 -4.5633 20 6 4.7553 4.0058 -5.7429 21 16 3.4878 3.9148 -7.0319 22 6 4.2432 4.9099 -8.2744 23 1 5.2107 5.3554 -8.0953 24 6 3.5950 5.1213 -9.4834 25 7 4.1591 5.8650 -10.4114 26 14 1.9221 4.3501 -9.7935 27 1 0.8566 5.2816 -9.3435 28 1 1.7629 4.0800 -11.2450 29 1 1.8168 3.0758 -9.0384 30 6 5.8954 1.9137 -1.4463 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.9500 -0.8401 -0.0004 35 1 3.8409 -0.5972 1.2199 36 1 5.2448 0.4953 1.2772 37 1 3.7471 0.9250 2.1376 38 1 6.8122 4.2659 -0.8670 39 1 5.9105 4.6570 0.6310 40 1 4.9856 4.9124 -2.1354 41 1 4.0823 5.3015 -0.6360 42 1 5.9574 3.5865 -3.4441 43 1 4.9014 5.0452 -5.4492 44 1 5.6922 3.6012 -6.1259 45 1 3.7062 6.0124 -11.2565 46 1 5.9246 0.8293 -1.3404 47 1 6.8203 2.2820 -1.8900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108951863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:28 Heat of formation + Delta-G solvation = -66.549782 kcal Electronic energy + Delta-G solvation = -28519.230059 eV Core-core repulsion = 24634.875851 eV Total energy + Delta-G solvation = -3884.354208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.59534 -40.63402 -39.91887 -35.70934 -35.62635 -34.69362 -34.30767 -31.69757 -30.71078 -30.23626 -28.65313 -27.86422 -27.67291 -24.72058 -23.20691 -22.36810 -21.72276 -20.65931 -20.41076 -19.85712 -18.44642 -18.10511 -17.80335 -17.19795 -17.05883 -16.93587 -16.43086 -16.31225 -15.93481 -15.81234 -15.13895 -14.92626 -14.78223 -14.55086 -14.02825 -13.90032 -13.80877 -13.62279 -13.45229 -13.37277 -13.27076 -13.16720 -13.04812 -12.98056 -12.68375 -12.62051 -12.45545 -12.30076 -11.90062 -11.81704 -11.73286 -11.19679 -11.16497 -11.04745 -10.80238 -10.55577 -10.38523 -10.16297 -9.40890 -9.01962 -8.53772 -6.24407 0.96003 1.29011 1.43970 1.51321 1.52978 1.62380 2.11379 2.19060 2.23529 2.68905 2.84558 2.88053 3.47530 3.53997 3.70016 3.73643 3.84575 4.03706 4.08181 4.11826 4.17686 4.21305 4.31042 4.38180 4.41559 4.43423 4.47059 4.55114 4.60199 4.75487 4.83194 4.88078 4.93358 4.97289 5.01015 5.11814 5.22855 5.26477 5.30948 5.41825 5.43444 5.66271 5.68970 5.91496 6.09497 6.42452 6.54963 6.91738 7.16583 7.27314 8.58689 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.002892 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.842491 B = 9680.718196 C =10972.504690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.726 5.726 3 C 0.505 3.495 4 O -0.574 6.574 5 C 0.040 3.960 6 H 0.085 0.915 7 C -0.133 4.133 8 N -0.481 5.481 9 C 0.056 3.944 10 H 0.153 0.847 11 C -0.108 4.108 12 C -0.118 4.118 13 C 0.038 3.962 14 H 0.071 0.929 15 C 0.114 3.886 16 H 0.064 0.936 17 N -0.695 5.695 18 C 0.534 3.466 19 O -0.564 6.564 20 C -0.109 4.109 21 S -0.180 6.180 22 C -0.527 4.527 23 H 0.064 0.936 24 C 0.047 3.953 25 N -0.916 5.916 26 Si 0.913 3.087 27 H -0.265 1.265 28 H -0.257 1.257 29 H -0.238 1.238 30 C -0.151 4.151 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.035 0.965 34 H 0.418 0.582 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.053 0.947 42 H 0.418 0.582 43 H 0.112 0.888 44 H 0.117 0.883 45 H 0.277 0.723 46 H 0.097 0.903 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.557 -15.102 28.435 32.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.379 5.379 3 C 0.291 3.709 4 O -0.452 6.452 5 C -0.072 4.072 6 H 0.102 0.898 7 C -0.191 4.191 8 N -0.205 5.205 9 C -0.052 4.052 10 H 0.170 0.830 11 C -0.145 4.145 12 C -0.156 4.156 13 C -0.072 4.072 14 H 0.089 0.911 15 C 0.007 3.993 16 H 0.082 0.918 17 N -0.350 5.350 18 C 0.320 3.680 19 O -0.442 6.442 20 C -0.260 4.260 21 S 0.047 5.953 22 C -0.675 4.675 23 H 0.082 0.918 24 C -0.159 4.159 25 N -0.554 5.554 26 Si 0.735 3.265 27 H -0.189 1.189 28 H -0.181 1.181 29 H -0.162 1.162 30 C -0.189 4.189 31 H 0.132 0.868 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.254 0.746 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.256 0.744 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.087 0.913 46 H 0.116 0.884 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.078 -14.977 28.784 32.703 hybrid contribution 0.800 0.459 -1.703 1.937 sum 4.878 -14.519 27.081 31.112 Atomic orbital electron populations 1.21599 0.79276 1.04120 1.00851 1.45726 1.08128 1.08694 1.75364 1.21152 0.91108 0.83625 0.74965 1.90697 1.71224 1.33176 1.50106 1.21980 0.90384 0.92548 1.02339 0.89795 1.21816 1.03265 0.99916 0.94081 1.67613 1.09679 1.12397 1.30765 1.24717 0.87037 0.96634 0.96779 0.83003 1.22645 0.97112 0.94463 1.00324 1.22565 0.97122 0.95456 1.00493 1.24557 0.97953 0.96335 0.88338 0.91097 1.22709 0.97137 0.93839 0.85636 0.91773 1.45721 1.22795 1.52691 1.13750 1.20041 0.83982 0.80153 0.83860 1.90697 1.24113 1.46967 1.82457 1.23260 1.03136 1.04134 0.95492 1.84785 1.29926 1.67657 1.12955 1.22448 1.07899 1.35097 1.02015 0.91771 1.25530 1.01266 0.94447 0.94632 1.70009 1.40346 1.38112 1.06945 0.85894 0.79961 0.81283 0.79394 1.18949 1.18096 1.16241 1.23566 0.97041 1.02638 0.95692 0.86828 0.93050 0.94650 0.74581 0.89409 0.88871 0.92497 0.88694 0.90554 0.90980 0.92845 0.74367 0.86937 0.86465 0.91330 0.88407 0.87582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.38 10.70 127.77 1.37 2.75 16 2 N -0.73 -11.91 5.62 -484.53 -2.72 -14.64 16 3 C 0.50 12.10 6.95 87.66 0.61 12.71 16 4 O -0.57 -20.14 14.82 -3.02 -0.04 -20.19 16 5 C 0.04 0.66 1.99 44.17 0.09 0.75 16 6 H 0.08 1.27 4.87 -2.39 -0.01 1.26 16 7 C -0.13 -1.12 9.07 71.98 0.65 -0.47 16 8 N -0.48 -9.47 5.07 -784.02 -3.98 -13.44 16 9 C 0.06 0.62 4.25 46.15 0.20 0.81 16 10 H 0.15 0.78 7.01 -2.38 -0.02 0.77 16 11 C -0.11 -1.37 6.43 32.21 0.21 -1.17 16 12 C -0.12 -2.52 6.32 32.20 0.20 -2.31 16 13 C 0.04 0.99 4.11 46.15 0.19 1.18 16 14 H 0.07 2.62 6.92 -2.39 -0.02 2.61 16 15 C 0.11 2.48 2.31 46.60 0.11 2.59 16 16 H 0.06 1.75 6.67 -2.38 -0.02 1.73 16 17 N -0.70 -16.36 3.70 -434.93 -1.61 -17.97 16 18 C 0.53 18.72 7.85 87.66 0.69 19.41 16 19 O -0.56 -25.18 15.54 -3.02 -0.05 -25.22 16 20 C -0.11 -4.14 6.16 71.24 0.44 -3.70 16 21 S -0.18 -9.26 18.55 -56.49 -1.05 -10.30 16 22 C -0.53 -30.95 10.04 67.95 0.68 -30.27 16 23 H 0.06 3.95 8.03 -2.91 -0.02 3.92 16 24 C 0.05 2.77 5.50 84.86 0.47 3.24 16 25 N -0.92 -56.18 13.97 21.65 0.30 -55.88 16 26 Si 0.91 45.78 27.74 68.60 1.90 47.69 16 27 H -0.26 -13.07 7.11 99.48 0.71 -12.37 16 28 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 29 H -0.24 -11.98 6.74 99.48 0.67 -11.31 16 30 C -0.15 -1.67 5.39 32.21 0.17 -1.50 16 31 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.42 3.51 8.31 -92.71 -0.77 2.74 16 35 H 0.09 0.33 7.66 -2.39 -0.02 0.31 16 36 H 0.09 0.37 6.52 -2.39 -0.02 0.36 16 37 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.78 7.82 -2.39 -0.02 0.76 16 39 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.07 1.52 6.43 -2.39 -0.02 1.50 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.42 6.81 7.95 -92.70 -0.74 6.08 16 43 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 44 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 45 H 0.28 15.71 8.31 -92.71 -0.77 14.94 16 46 H 0.10 0.78 7.35 -2.39 -0.02 0.76 16 47 H 0.11 0.80 7.37 -2.39 -0.02 0.78 16 Total: -1.00 -87.42 379.35 -1.71 -89.13 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -0.54 Total: 16.81 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 6.07 Total: 4.02 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -8.00 Total: -101.93 kcal Atomic # 8 Polarization: -45.32 SS G_CDS: -0.09 Total: -45.41 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.69 kcal Atomic # 16 Polarization: -9.26 SS G_CDS: -1.05 Total: -10.30 kcal Total: -87.42 -1.71 -89.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108951863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.579 kcal (2) G-P(sol) polarization free energy of solvation -87.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds