Wall clock time and date at job start Wed Apr 1 2020 00:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00149 * 2 1 4 4 O 1.21275 * 119.99975 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99792 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46985 * 299.99381 * 5 3 2 7 7 C 1.52998 * 109.47385 * 59.99578 * 5 3 2 8 8 N 1.46898 * 109.46883 * 180.02562 * 5 3 2 9 9 C 1.50644 * 111.00587 * 66.90176 * 8 5 3 10 10 H 1.09004 * 115.87888 * 295.93783 * 9 8 5 11 11 C 1.55847 * 101.02947 * 170.23923 * 9 8 5 12 12 C 1.54834 * 103.51930 * 327.00743 * 11 9 8 13 13 C 1.50651 * 111.00090 * 174.99823 * 8 5 3 14 14 H 1.09004 * 116.47853 * 63.69692 * 13 8 5 15 15 C 1.55847 * 101.02655 * 297.64836 * 13 8 5 16 16 H 1.09000 * 110.61304 * 85.66931 * 15 13 8 17 17 N 1.46500 * 110.60987 * 208.49843 * 15 13 8 18 18 C 1.34773 * 120.00048 * 274.06342 * 17 15 13 19 19 O 1.21283 * 120.00001 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99967 * 180.02562 * 18 17 15 21 21 S 1.81000 * 109.46833 * 179.97438 * 20 18 17 22 22 C 1.76204 * 99.99941 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99766 * 359.97438 * 22 21 20 24 24 C 1.38803 * 119.99987 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00354 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99630 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47357 * 359.97438 * 26 24 22 28 28 H 1.48511 * 109.46659 * 239.99563 * 26 24 22 29 29 H 1.48493 * 109.47235 * 120.00108 * 26 24 22 30 30 C 1.54836 * 103.65615 * 327.08400 * 15 13 8 31 31 H 1.08997 * 109.47506 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47378 * 300.00443 * 1 2 3 33 33 H 1.08998 * 109.46826 * 59.99941 * 1 2 3 34 34 H 0.97005 * 119.99847 * 179.97438 * 2 1 3 35 35 H 1.08998 * 109.46939 * 60.00289 * 7 5 3 36 36 H 1.08997 * 109.46670 * 179.97438 * 7 5 3 37 37 H 1.08992 * 109.47267 * 300.00107 * 7 5 3 38 38 H 1.09001 * 110.61487 * 208.49724 * 11 9 8 39 39 H 1.09001 * 110.61226 * 85.51696 * 11 9 8 40 40 H 1.08996 * 110.61745 * 241.49015 * 12 11 9 41 41 H 1.09005 * 110.61509 * 118.50408 * 12 11 9 42 42 H 0.96996 * 120.00004 * 94.06765 * 17 15 13 43 43 H 1.08995 * 109.47181 * 60.00070 * 20 18 17 44 44 H 1.09003 * 109.46819 * 299.99715 * 20 18 17 45 45 H 0.97006 * 119.99885 * 0.02562 * 25 24 22 46 46 H 1.09002 * 110.61335 * 118.43062 * 30 15 13 47 47 H 1.08998 * 110.61007 * 241.41611 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1671 -0.0006 6 1 4.0096 0.6531 0.8892 7 6 4.1555 0.4460 -1.2501 8 7 4.1356 2.5520 0.0002 9 6 3.7960 3.2442 1.2943 10 1 2.7334 3.3759 1.4988 11 6 4.6225 4.5581 1.1556 12 6 5.8742 4.1159 0.3586 13 6 5.6366 2.5939 0.1222 14 1 6.2034 2.1506 -0.6966 15 6 5.8408 1.9314 1.5180 16 1 5.8763 0.8459 1.4260 17 7 7.0613 2.4339 2.1538 18 6 8.2485 1.8559 1.8842 19 8 8.3066 0.9201 1.1149 20 6 9.5039 2.3724 2.5387 21 16 10.9215 1.3959 1.9792 22 6 12.2140 2.1931 2.8729 23 1 11.9872 3.0247 3.5237 24 6 13.5237 1.7530 2.7397 25 7 13.8001 0.7399 1.9462 26 14 14.8937 2.5977 3.6878 27 1 14.3243 3.7000 4.5039 28 1 15.8876 3.1515 2.7333 29 1 15.5585 1.6137 4.5793 30 6 4.5894 2.3700 2.3174 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.9500 -0.8401 0.0004 35 1 3.7919 0.9600 -2.1398 36 1 5.2455 0.4464 -1.2506 37 1 3.7921 -0.5816 -1.2501 38 1 4.9069 4.9381 2.1369 39 1 4.0597 5.3088 0.6008 40 1 6.7790 4.2766 0.9447 41 1 5.9317 4.6473 -0.5914 42 1 7.0148 3.1825 2.7688 43 1 9.4101 2.2886 3.6213 44 1 9.6519 3.4175 2.2665 45 1 13.0886 0.3010 1.4542 46 1 4.0032 1.5021 2.6193 47 1 4.8772 2.9613 3.1867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108951864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:31 Heat of formation + Delta-G solvation = -42.638605 kcal Electronic energy + Delta-G solvation = -28284.101977 eV Core-core repulsion = 24400.784635 eV Total energy + Delta-G solvation = -3883.317342 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.76260 -39.71322 -38.68708 -34.94699 -34.53139 -33.52142 -32.55459 -30.61054 -29.90784 -29.11338 -27.67513 -27.16658 -24.86120 -24.00937 -22.35147 -21.24867 -20.73444 -20.09146 -19.34159 -18.37875 -17.55892 -17.21333 -16.67997 -16.29470 -15.98358 -15.53371 -15.45260 -14.80899 -14.68793 -14.21047 -13.95149 -13.86759 -13.35586 -13.21487 -13.16028 -12.85351 -12.77025 -12.73925 -12.67014 -12.39904 -12.29748 -12.08484 -11.93518 -11.83584 -11.71785 -11.60663 -11.05048 -10.94699 -10.92177 -10.34434 -10.22745 -9.99149 -9.62493 -9.58132 -9.49586 -9.36511 -9.03440 -8.53471 -8.25233 -6.69961 -6.64926 -4.02900 2.34525 2.73991 2.86795 2.91751 3.32700 3.38643 3.44775 3.52601 3.67854 4.20947 4.23281 4.28702 4.42345 4.51973 4.71153 4.75174 4.82988 4.84705 4.92294 5.01521 5.04947 5.10385 5.13891 5.17773 5.19846 5.29343 5.37749 5.41342 5.45158 5.52360 5.57762 5.63962 5.72938 5.81388 5.84988 5.95661 5.97801 5.99123 6.03813 6.06143 6.33738 6.54652 6.62725 7.11491 7.55704 7.90722 7.91794 8.45363 8.47705 9.24258 10.79140 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.002276 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.166871 B =12296.974300 C =12827.148457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.739 5.739 3 C 0.521 3.479 4 O -0.522 6.522 5 C 0.039 3.961 6 H 0.077 0.923 7 C -0.143 4.143 8 N -0.466 5.466 9 C 0.052 3.948 10 H 0.125 0.875 11 C -0.114 4.114 12 C -0.115 4.115 13 C 0.040 3.960 14 H 0.121 0.879 15 C 0.116 3.884 16 H 0.090 0.910 17 N -0.723 5.723 18 C 0.532 3.468 19 O -0.517 6.517 20 C -0.131 4.131 21 S -0.115 6.115 22 C -0.607 4.607 23 H 0.066 0.934 24 C 0.035 3.965 25 N -0.885 5.885 26 Si 1.090 2.910 27 H -0.288 1.288 28 H -0.283 1.283 29 H -0.283 1.283 30 C -0.164 4.164 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.402 0.598 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.399 0.601 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.278 0.722 46 H 0.073 0.927 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.310 1.804 -1.198 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.392 5.392 3 C 0.306 3.694 4 O -0.397 6.397 5 C -0.073 4.073 6 H 0.095 0.905 7 C -0.201 4.201 8 N -0.190 5.190 9 C -0.056 4.056 10 H 0.143 0.857 11 C -0.152 4.152 12 C -0.153 4.153 13 C -0.069 4.069 14 H 0.139 0.861 15 C 0.009 3.991 16 H 0.108 0.892 17 N -0.378 5.378 18 C 0.318 3.682 19 O -0.391 6.391 20 C -0.282 4.282 21 S 0.111 5.889 22 C -0.755 4.755 23 H 0.085 0.915 24 C -0.176 4.176 25 N -0.519 5.519 26 Si 0.916 3.084 27 H -0.214 1.214 28 H -0.209 1.209 29 H -0.209 1.209 30 C -0.203 4.203 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.235 0.765 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.234 0.766 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -25.313 1.228 -2.776 25.495 hybrid contribution -1.207 0.596 1.831 2.273 sum -26.520 1.825 -0.945 26.600 Atomic orbital electron populations 1.21513 0.79535 1.02173 1.02295 1.45823 1.07756 1.08811 1.76798 1.20508 0.89673 0.83612 0.75581 1.90681 1.70052 1.31065 1.47875 1.21885 0.91835 0.92916 1.00710 0.90544 1.21796 1.02761 0.99111 0.96408 1.67668 1.06775 1.10978 1.33557 1.24632 0.99753 0.94272 0.86975 0.85723 1.22603 0.96051 0.96474 1.00053 1.22574 0.97889 0.94014 1.00865 1.24869 0.88323 0.97266 0.96482 0.86135 1.22591 0.83973 0.99581 0.92945 0.89160 1.46014 1.06189 1.36843 1.48735 1.20307 0.84116 0.82485 0.81309 1.90691 1.86057 1.27461 1.34877 1.23316 0.96722 1.04702 1.03489 1.84805 0.97354 1.44867 1.61897 1.23761 0.95057 1.22719 1.33983 0.91537 1.26058 0.98518 0.95988 0.96999 1.70742 1.36869 1.19632 1.24679 0.83250 0.74388 0.75219 0.75534 1.21399 1.20863 1.20884 1.23634 0.96165 1.00996 0.99524 0.90683 0.92319 0.92230 0.76478 0.91180 0.90687 0.91773 0.91369 0.90888 0.90581 0.90991 0.76631 0.89050 0.88947 0.90935 0.90863 0.89866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.70 59.85 0.64 1.15 16 2 N -0.74 -5.03 5.60 -67.08 -0.38 -5.40 16 3 C 0.52 5.21 6.93 -10.98 -0.08 5.14 16 4 O -0.52 -7.06 14.60 5.56 0.08 -6.98 16 5 C 0.04 0.37 1.99 -68.87 -0.14 0.23 16 6 H 0.08 0.67 4.85 -51.93 -0.25 0.42 16 7 C -0.14 -1.21 9.07 37.16 0.34 -0.87 16 8 N -0.47 -5.04 5.09 -198.94 -1.01 -6.05 16 9 C 0.05 0.51 4.22 -62.36 -0.26 0.25 16 10 H 0.13 1.36 6.69 -51.93 -0.35 1.02 16 11 C -0.11 -1.05 6.44 -24.24 -0.16 -1.21 16 12 C -0.12 -1.22 6.32 -24.25 -0.15 -1.37 16 13 C 0.04 0.45 4.18 -62.56 -0.26 0.19 16 14 H 0.12 1.53 7.14 -51.93 -0.37 1.16 16 15 C 0.12 1.30 2.25 -65.44 -0.15 1.15 16 16 H 0.09 1.15 6.86 -51.93 -0.36 0.80 16 17 N -0.72 -8.95 3.63 -51.40 -0.19 -9.13 16 18 C 0.53 9.29 7.84 -10.99 -0.09 9.20 16 19 O -0.52 -10.93 15.59 5.55 0.09 -10.84 16 20 C -0.13 -2.56 6.16 36.01 0.22 -2.34 16 21 S -0.12 -3.05 19.60 -107.50 -2.11 -5.16 16 22 C -0.61 -17.31 9.50 30.94 0.29 -17.01 16 23 H 0.07 1.83 7.80 -52.49 -0.41 1.42 16 24 C 0.03 1.01 5.49 -17.43 -0.10 0.91 16 25 N -0.88 -27.33 13.67 55.49 0.76 -26.57 16 26 Si 1.09 24.88 29.92 -169.99 -5.09 19.80 16 27 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 30 C -0.16 -1.47 5.42 -24.04 -0.13 -1.60 16 31 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.40 1.73 8.25 -40.82 -0.34 1.39 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.71 6.75 -51.93 -0.35 0.36 16 37 H 0.06 0.39 7.56 -51.93 -0.39 0.00 16 38 H 0.07 0.53 7.83 -51.93 -0.41 0.13 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.82 6.48 -51.93 -0.34 0.48 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.40 3.93 8.02 -40.82 -0.33 3.60 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 45 H 0.28 8.76 7.13 -40.82 -0.29 8.47 16 46 H 0.07 0.62 7.25 -51.93 -0.38 0.25 16 47 H 0.08 0.66 7.35 -51.93 -0.38 0.28 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -36.26 380.65 -9.23 -45.49 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.11 Total: 5.29 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.01 Total: -6.18 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -0.82 Total: -47.16 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.17 Total: -17.82 kcal Atomic # 14 Polarization: 24.88 SS G_CDS: -5.09 Total: 19.80 kcal Atomic # 16 Polarization: -3.05 SS G_CDS: -2.11 Total: -5.16 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.26 -9.23 -45.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108951864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.856 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds