Wall clock time and date at job start Wed Apr 1 2020 00:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34776 * 120.00149 * 2 1 4 4 O 1.21275 * 119.99975 * 359.97438 * 3 2 1 5 5 C 1.50703 * 119.99792 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.46985 * 299.99381 * 5 3 2 7 7 C 1.52998 * 109.47385 * 59.99578 * 5 3 2 8 8 N 1.46898 * 109.46883 * 180.02562 * 5 3 2 9 9 C 1.50644 * 111.00587 * 66.90176 * 8 5 3 10 10 H 1.09004 * 115.87888 * 295.93783 * 9 8 5 11 11 C 1.55847 * 101.02947 * 170.23923 * 9 8 5 12 12 C 1.54834 * 103.51930 * 327.00743 * 11 9 8 13 13 C 1.50651 * 111.00090 * 174.99823 * 8 5 3 14 14 H 1.09004 * 116.47853 * 63.69692 * 13 8 5 15 15 C 1.55847 * 101.02655 * 297.64836 * 13 8 5 16 16 H 1.09000 * 110.61304 * 85.66931 * 15 13 8 17 17 N 1.46500 * 110.60987 * 208.49843 * 15 13 8 18 18 C 1.34773 * 120.00048 * 274.06342 * 17 15 13 19 19 O 1.21283 * 120.00001 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99967 * 180.02562 * 18 17 15 21 21 S 1.81000 * 109.46833 * 179.97438 * 20 18 17 22 22 C 1.76204 * 99.99941 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99766 * 359.97438 * 22 21 20 24 24 C 1.38803 * 119.99987 * 180.02562 * 22 21 20 25 25 N 1.31625 * 120.00354 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99630 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47357 * 359.97438 * 26 24 22 28 28 H 1.48511 * 109.46659 * 239.99563 * 26 24 22 29 29 H 1.48493 * 109.47235 * 120.00108 * 26 24 22 30 30 C 1.54836 * 103.65615 * 327.08400 * 15 13 8 31 31 H 1.08997 * 109.47506 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47378 * 300.00443 * 1 2 3 33 33 H 1.08998 * 109.46826 * 59.99941 * 1 2 3 34 34 H 0.97005 * 119.99847 * 179.97438 * 2 1 3 35 35 H 1.08998 * 109.46939 * 60.00289 * 7 5 3 36 36 H 1.08997 * 109.46670 * 179.97438 * 7 5 3 37 37 H 1.08992 * 109.47267 * 300.00107 * 7 5 3 38 38 H 1.09001 * 110.61487 * 208.49724 * 11 9 8 39 39 H 1.09001 * 110.61226 * 85.51696 * 11 9 8 40 40 H 1.08996 * 110.61745 * 241.49015 * 12 11 9 41 41 H 1.09005 * 110.61509 * 118.50408 * 12 11 9 42 42 H 0.96996 * 120.00004 * 94.06765 * 17 15 13 43 43 H 1.08995 * 109.47181 * 60.00070 * 20 18 17 44 44 H 1.09003 * 109.46819 * 299.99715 * 20 18 17 45 45 H 0.97006 * 119.99885 * 0.02562 * 25 24 22 46 46 H 1.09002 * 110.61335 * 118.43062 * 30 15 13 47 47 H 1.08998 * 110.61007 * 241.41611 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5326 2.2175 -0.0005 5 6 3.6460 1.1671 -0.0006 6 1 4.0096 0.6531 0.8892 7 6 4.1555 0.4460 -1.2501 8 7 4.1356 2.5520 0.0002 9 6 3.7960 3.2442 1.2943 10 1 2.7334 3.3759 1.4988 11 6 4.6225 4.5581 1.1556 12 6 5.8742 4.1159 0.3586 13 6 5.6366 2.5939 0.1222 14 1 6.2034 2.1506 -0.6966 15 6 5.8408 1.9314 1.5180 16 1 5.8763 0.8459 1.4260 17 7 7.0613 2.4339 2.1538 18 6 8.2485 1.8559 1.8842 19 8 8.3066 0.9201 1.1149 20 6 9.5039 2.3724 2.5387 21 16 10.9215 1.3959 1.9792 22 6 12.2140 2.1931 2.8729 23 1 11.9872 3.0247 3.5237 24 6 13.5237 1.7530 2.7397 25 7 13.8001 0.7399 1.9462 26 14 14.8937 2.5977 3.6878 27 1 14.3243 3.7000 4.5039 28 1 15.8876 3.1515 2.7333 29 1 15.5585 1.6137 4.5793 30 6 4.5894 2.3700 2.3174 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.9500 -0.8401 0.0004 35 1 3.7919 0.9600 -2.1398 36 1 5.2455 0.4464 -1.2506 37 1 3.7921 -0.5816 -1.2501 38 1 4.9069 4.9381 2.1369 39 1 4.0597 5.3088 0.6008 40 1 6.7790 4.2766 0.9447 41 1 5.9317 4.6473 -0.5914 42 1 7.0148 3.1825 2.7688 43 1 9.4101 2.2886 3.6213 44 1 9.6519 3.4175 2.2665 45 1 13.0886 0.3010 1.4542 46 1 4.0032 1.5021 2.6193 47 1 4.8772 2.9613 3.1867 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108951864.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:30 Heat of formation + Delta-G solvation = -70.737928 kcal Electronic energy + Delta-G solvation = -28285.320455 eV Core-core repulsion = 24400.784635 eV Total energy + Delta-G solvation = -3884.535820 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.63622 -40.66622 -39.88149 -35.65873 -35.60500 -34.74296 -34.41616 -31.72265 -30.98632 -29.91229 -28.78249 -27.76051 -27.04492 -24.73991 -23.23360 -22.26964 -21.75801 -20.89151 -20.40238 -20.27293 -18.40055 -18.19039 -17.78186 -17.34360 -17.03617 -16.63108 -16.36128 -16.12039 -15.91266 -15.72535 -15.12000 -14.90213 -14.69505 -14.46285 -14.09346 -14.01209 -13.87570 -13.66520 -13.58183 -13.49019 -13.37516 -13.11509 -13.06048 -12.76086 -12.73216 -12.51145 -12.40992 -11.93015 -11.87798 -11.76883 -11.54435 -11.21239 -11.11216 -11.04466 -10.80855 -10.40798 -10.31072 -10.13978 -9.45866 -8.91840 -8.84923 -6.26411 1.20717 1.51721 1.52171 1.57653 1.62028 1.78307 2.06923 2.18542 2.34401 2.82580 3.02912 3.14106 3.41663 3.47821 3.66283 3.73526 3.83172 3.96478 4.01918 4.06230 4.11353 4.18447 4.25522 4.33184 4.37037 4.39533 4.46356 4.55573 4.61244 4.66202 4.74362 4.78202 4.87240 4.93489 4.97846 5.08968 5.14446 5.18601 5.24071 5.39657 5.42704 5.61943 5.65976 5.83828 6.16224 6.41414 6.51911 7.06632 7.15699 7.22798 8.51841 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.002276 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.166871 B =12296.974300 C =12827.148457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.726 5.726 3 C 0.520 3.480 4 O -0.562 6.562 5 C 0.039 3.961 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.480 5.480 9 C 0.054 3.946 10 H 0.118 0.882 11 C -0.108 4.108 12 C -0.115 4.115 13 C 0.038 3.962 14 H 0.100 0.900 15 C 0.118 3.882 16 H 0.076 0.924 17 N -0.696 5.696 18 C 0.537 3.463 19 O -0.559 6.559 20 C -0.110 4.110 21 S -0.193 6.193 22 C -0.612 4.612 23 H 0.074 0.926 24 C -0.020 4.020 25 N -0.914 5.914 26 Si 1.140 2.860 27 H -0.263 1.263 28 H -0.275 1.275 29 H -0.275 1.275 30 C -0.151 4.151 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.048 0.952 34 H 0.416 0.584 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.416 0.584 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.261 0.739 46 H 0.082 0.918 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.552 2.763 0.695 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.379 5.379 3 C 0.306 3.694 4 O -0.440 6.440 5 C -0.073 4.073 6 H 0.103 0.897 7 C -0.197 4.197 8 N -0.203 5.203 9 C -0.054 4.054 10 H 0.135 0.865 11 C -0.146 4.146 12 C -0.153 4.153 13 C -0.071 4.071 14 H 0.118 0.882 15 C 0.011 3.989 16 H 0.094 0.906 17 N -0.350 5.350 18 C 0.322 3.678 19 O -0.437 6.437 20 C -0.262 4.262 21 S 0.034 5.966 22 C -0.760 4.760 23 H 0.092 0.908 24 C -0.223 4.223 25 N -0.550 5.550 26 Si 0.959 3.041 27 H -0.187 1.187 28 H -0.201 1.201 29 H -0.200 1.200 30 C -0.190 4.190 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.252 0.748 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.254 0.746 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.072 0.928 46 H 0.101 0.899 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -26.619 2.182 -0.866 26.723 hybrid contribution -1.009 0.287 1.193 1.589 sum -27.628 2.469 0.327 27.740 Atomic orbital electron populations 1.21647 0.78585 1.04145 1.01391 1.45771 1.08431 1.08549 1.75108 1.20588 0.89775 0.83868 0.75206 1.90663 1.70698 1.32563 1.50078 1.21929 0.91709 0.92409 1.01299 0.89711 1.21774 1.01795 1.00439 0.95669 1.67655 1.06097 1.12040 1.34518 1.24580 0.99492 0.94633 0.86722 0.86458 1.22606 0.95019 0.96076 1.00876 1.22567 0.98589 0.93265 1.00873 1.24735 0.88785 0.97773 0.95835 0.88165 1.22651 0.84013 0.98809 0.93390 0.90576 1.45737 1.04995 1.36335 1.47974 1.19961 0.84822 0.82174 0.80823 1.90689 1.86635 1.29516 1.36866 1.23225 0.94367 1.04098 1.04486 1.85029 1.01024 1.47518 1.63014 1.24081 0.95690 1.22575 1.33611 0.90755 1.27795 1.01748 0.95743 0.97033 1.70863 1.36341 1.21349 1.26416 0.82659 0.71697 0.75049 0.74729 1.18717 1.20095 1.20045 1.23568 0.94538 1.01465 0.99437 0.87280 0.93035 0.93346 0.74833 0.92197 0.92093 0.89237 0.89143 0.91299 0.90557 0.91715 0.74594 0.87153 0.87102 0.92759 0.89904 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.84 10.70 127.77 1.37 2.20 16 2 N -0.73 -8.65 5.60 -484.53 -2.72 -11.37 16 3 C 0.52 9.93 6.93 87.66 0.61 10.53 16 4 O -0.56 -15.02 14.60 -3.01 -0.04 -15.06 16 5 C 0.04 0.70 1.99 44.17 0.09 0.79 16 6 H 0.09 1.38 4.85 -2.39 -0.01 1.37 16 7 C -0.14 -2.31 9.07 71.98 0.65 -1.66 16 8 N -0.48 -10.10 5.09 -783.31 -3.99 -14.09 16 9 C 0.05 0.97 4.22 46.28 0.20 1.17 16 10 H 0.12 2.41 6.69 -2.38 -0.02 2.39 16 11 C -0.11 -1.78 6.44 32.20 0.21 -1.57 16 12 C -0.11 -2.29 6.32 32.20 0.20 -2.08 16 13 C 0.04 0.85 4.18 46.15 0.19 1.05 16 14 H 0.10 2.66 7.14 -2.38 -0.02 2.64 16 15 C 0.12 2.47 2.25 46.60 0.10 2.57 16 16 H 0.08 1.88 6.86 -2.39 -0.02 1.86 16 17 N -0.70 -15.75 3.63 -434.94 -1.58 -17.33 16 18 C 0.54 18.21 7.84 87.66 0.69 18.90 16 19 O -0.56 -23.94 15.59 -3.04 -0.05 -23.98 16 20 C -0.11 -4.15 6.16 71.24 0.44 -3.71 16 21 S -0.19 -10.33 19.60 -56.49 -1.11 -11.44 16 22 C -0.61 -34.75 9.50 67.96 0.65 -34.10 16 23 H 0.07 3.97 7.80 -2.91 -0.02 3.95 16 24 C -0.02 -1.15 5.49 84.86 0.47 -0.69 16 25 N -0.91 -57.56 13.67 21.65 0.30 -57.26 16 26 Si 1.14 49.03 29.92 68.60 2.05 51.08 16 27 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 28 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 30 C -0.15 -2.30 5.42 32.34 0.18 -2.13 16 31 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.42 2.61 8.25 -92.70 -0.76 1.85 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.06 1.20 6.75 -2.39 -0.02 1.18 16 37 H 0.09 0.98 7.56 -2.39 -0.02 0.96 16 38 H 0.09 1.10 7.83 -2.39 -0.02 1.08 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.49 6.48 -2.39 -0.02 1.47 16 41 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.42 6.74 8.02 -92.71 -0.74 6.00 16 43 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 44 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 45 H 0.26 17.08 7.13 -92.70 -0.66 16.42 16 46 H 0.08 1.17 7.25 -2.39 -0.02 1.15 16 47 H 0.10 1.21 7.35 -2.39 -0.02 1.19 16 Total: -1.00 -81.42 380.65 -1.49 -82.92 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: -0.39 Total: 25.27 kcal Atomic # 6 Polarization: -14.77 SS G_CDS: 6.03 Total: -8.73 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -7.99 Total: -100.05 kcal Atomic # 8 Polarization: -38.95 SS G_CDS: -0.09 Total: -39.04 kcal Atomic # 14 Polarization: 49.03 SS G_CDS: 2.05 Total: 51.08 kcal Atomic # 16 Polarization: -10.33 SS G_CDS: -1.11 Total: -11.44 kcal Total: -81.42 -1.49 -82.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108951864.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.181 kcal (2) G-P(sol) polarization free energy of solvation -81.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds