Wall clock time and date at job start Wed Apr 1 2020 00:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81402 * 102.99669 * 2 1 4 4 H 1.08998 * 109.47344 * 305.00303 * 3 2 1 5 5 C 1.53000 * 109.46885 * 65.00287 * 3 2 1 6 6 C 1.50709 * 109.46796 * 184.99848 * 3 2 1 7 7 O 1.21280 * 120.00205 * 340.00397 * 6 3 2 8 8 N 1.34780 * 119.99161 * 160.00303 * 6 3 2 9 9 C 1.46499 * 119.99372 * 179.72592 * 8 6 3 10 10 H 1.09005 * 110.55112 * 36.88587 * 9 8 6 11 11 C 1.54831 * 110.61327 * 159.92106 * 9 8 6 12 12 C 1.55867 * 103.50959 * 117.40545 * 11 9 8 13 13 H 1.09000 * 115.89508 * 159.82956 * 12 11 9 14 14 C 1.55848 * 105.72211 * 289.26656 * 12 11 9 15 15 C 1.54834 * 103.52158 * 71.48785 * 14 12 11 16 16 C 1.55847 * 103.51558 * 359.97438 * 15 14 12 17 17 H 1.09007 * 115.58410 * 159.64256 * 16 15 14 18 18 N 1.50654 * 101.73777 * 33.22795 * 16 15 14 19 19 C 1.46895 * 111.00246 * 189.57059 * 18 16 15 20 20 C 1.50704 * 109.47091 * 169.99517 * 19 18 16 21 21 O 1.21294 * 119.99813 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00305 * 179.97438 * 20 19 18 23 23 C 1.37098 * 120.00158 * 180.02562 * 22 20 19 24 24 H 1.08003 * 119.99920 * 0.02562 * 23 22 20 25 25 C 1.38947 * 119.99539 * 180.02562 * 23 22 20 26 26 N 1.31409 * 120.00685 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99619 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47166 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47380 * 119.99698 * 27 25 23 30 30 H 1.48503 * 109.47357 * 239.99843 * 27 25 23 31 31 H 1.09009 * 109.46753 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47184 * 299.99531 * 1 2 3 33 33 H 1.08996 * 109.47135 * 60.00239 * 1 2 3 34 34 H 1.08997 * 109.46911 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47025 * 299.99977 * 5 3 2 36 36 H 1.08998 * 109.47116 * 59.99877 * 5 3 2 37 37 H 0.96994 * 120.00808 * 0.02562 * 8 6 3 38 38 H 1.09000 * 110.61579 * 237.01101 * 11 9 8 39 39 H 1.08997 * 110.61210 * 0.02562 * 11 9 8 40 40 H 1.09002 * 110.61382 * 312.97554 * 14 12 11 41 41 H 1.09006 * 110.61507 * 189.99349 * 14 12 11 42 42 H 1.08994 * 110.61671 * 241.49200 * 15 14 12 43 43 H 1.09002 * 110.61410 * 118.50198 * 15 14 12 44 44 H 1.08997 * 109.47320 * 289.99466 * 19 18 16 45 45 H 1.09005 * 109.47125 * 49.99985 * 19 18 16 46 46 H 0.97000 * 119.99626 * 0.02562 * 22 20 19 47 47 H 0.97000 * 120.00265 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.7293 2.2542 -0.8418 5 6 1.7427 2.4015 1.3074 6 6 3.7142 1.9386 -0.1238 7 8 4.4551 1.0200 0.1555 8 7 4.2251 3.1126 -0.5450 9 6 5.6758 3.2809 -0.6596 10 1 6.1413 2.3600 -1.0112 11 6 6.0149 4.4614 -1.6023 12 6 6.7604 5.4667 -0.6734 13 1 7.3842 6.2062 -1.1756 14 6 5.6740 6.0419 0.2846 15 6 5.3521 4.8527 1.2225 16 6 6.2866 3.7177 0.7054 17 1 6.4837 2.9116 1.4122 18 7 7.4905 4.4977 0.2453 19 6 8.4231 3.6381 -0.4958 20 6 9.4824 4.4898 -1.1465 21 8 9.4627 5.6945 -1.0062 22 7 10.4523 3.9130 -1.8834 23 6 11.4163 4.6879 -2.4750 24 1 11.3988 5.7605 -2.3501 25 6 12.4158 4.0931 -3.2351 26 7 12.4369 2.7880 -3.3875 27 14 13.7297 5.1488 -4.0405 28 1 13.4838 6.5772 -3.7175 29 1 15.0663 4.7497 -3.5313 30 1 13.6840 4.9587 -5.5126 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.9882 3.4635 1.3076 35 1 0.6635 2.2777 1.3970 36 1 2.2353 1.9149 2.1492 37 1 3.6325 3.8474 -0.7680 38 1 6.6503 4.1272 -2.4225 39 1 5.1035 4.9216 -1.9840 40 1 4.7875 6.3399 -0.2753 41 1 6.0704 6.8829 0.8536 42 1 4.3062 4.5612 1.1275 43 1 5.5891 5.1042 2.2563 44 1 8.8937 2.9351 0.1916 45 1 7.8783 3.0872 -1.2625 46 1 10.4683 2.9496 -1.9953 47 1 13.1345 2.3729 -3.9185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108969576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:45 Heat of formation + Delta-G solvation = -36.066519 kcal Electronic energy + Delta-G solvation = -28357.751676 eV Core-core repulsion = 24474.719322 eV Total energy + Delta-G solvation = -3883.032355 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.27606 -39.39504 -37.80195 -34.52994 -33.92322 -33.46602 -31.97080 -31.12646 -29.76668 -29.24841 -28.47449 -26.48518 -24.98714 -24.13352 -22.24022 -21.12944 -20.26072 -19.46421 -18.94251 -17.83846 -17.66632 -17.09783 -16.22216 -15.88145 -15.75138 -15.56255 -15.09962 -14.76652 -14.48869 -14.40405 -13.98306 -13.86234 -13.78029 -13.36938 -13.09641 -12.84078 -12.68905 -12.67041 -12.38734 -12.15016 -12.08903 -11.93514 -11.78651 -11.69181 -11.48366 -11.29665 -11.06243 -10.76229 -10.68937 -10.33783 -10.21832 -10.20974 -10.16337 -10.06240 -9.49794 -9.36987 -8.40636 -8.06975 -7.99956 -7.93994 -6.40618 -3.81604 1.09698 2.13616 2.38909 2.89161 3.16704 3.27289 3.34124 3.89329 3.96591 4.20594 4.25032 4.37328 4.51428 4.56826 4.65304 4.70871 4.75074 4.80701 4.99879 5.03369 5.12824 5.16347 5.20099 5.24645 5.31114 5.32210 5.39760 5.43851 5.58195 5.66927 5.69117 5.85022 5.94575 5.97634 5.99272 6.17062 6.21769 6.28674 6.35482 6.52042 6.86178 7.19155 7.23963 7.56096 7.95120 8.07087 8.62253 9.18742 9.55467 10.06695 10.77101 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002425 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.050875 B =11543.925717 C =12493.889678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.185 6.185 3 C -0.095 4.095 4 H 0.106 0.894 5 C -0.142 4.142 6 C 0.532 3.468 7 O -0.514 6.514 8 N -0.709 5.709 9 C 0.113 3.887 10 H 0.095 0.905 11 C -0.161 4.161 12 C 0.059 3.941 13 H 0.136 0.864 14 C -0.116 4.116 15 C -0.112 4.112 16 C 0.034 3.966 17 H 0.112 0.888 18 N -0.465 5.465 19 C 0.022 3.978 20 C 0.446 3.554 21 O -0.582 6.582 22 N -0.563 5.563 23 C -0.298 4.298 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.900 5.900 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.104 0.896 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.399 0.601 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.091 0.909 45 H 0.056 0.944 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.795 -1.254 6.335 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.041 5.959 3 C -0.227 4.227 4 H 0.124 0.876 5 C -0.201 4.201 6 C 0.315 3.685 7 O -0.388 6.388 8 N -0.361 5.361 9 C 0.007 3.993 10 H 0.113 0.887 11 C -0.200 4.200 12 C -0.049 4.049 13 H 0.154 0.846 14 C -0.154 4.154 15 C -0.150 4.150 16 C -0.076 4.076 17 H 0.130 0.870 18 N -0.188 5.188 19 C -0.110 4.110 20 C 0.231 3.769 21 O -0.466 6.466 22 N -0.200 5.200 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.542 5.542 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.122 0.878 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.234 0.766 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.043 -1.853 6.973 25.102 hybrid contribution -0.883 0.661 -1.430 1.806 sum -24.926 -1.192 5.544 25.563 Atomic orbital electron populations 1.23560 0.95852 1.06718 1.04847 1.87575 1.04634 1.05877 1.97835 1.23348 0.97407 0.98588 1.03349 0.87603 1.22000 1.01899 1.01143 0.95077 1.19627 0.88622 0.82845 0.77366 1.90773 1.60294 1.39918 1.47822 1.45967 1.07894 1.14236 1.68036 1.22853 0.79551 0.99660 0.97266 0.88700 1.23544 1.01551 0.96132 0.98814 1.24878 0.92983 0.95372 0.91660 0.84598 1.22603 0.97419 0.97979 0.97381 1.22527 0.98034 0.94653 0.99750 1.24801 0.90763 0.96193 0.95814 0.86960 1.67821 1.09028 1.11388 1.30580 1.22157 0.95060 0.95958 0.97818 1.19669 0.84655 0.88718 0.83848 1.90474 1.76727 1.14624 1.64813 1.41881 1.23965 1.09874 1.44239 1.19735 1.03625 0.92980 1.26425 0.87861 1.25270 0.98880 0.96018 0.97841 1.69622 1.34959 1.08936 1.40659 0.85811 0.80076 0.79956 0.78555 1.19235 1.20748 1.20795 0.87769 0.90379 0.90581 0.91080 0.91316 0.90425 0.76620 0.89911 0.90725 0.91885 0.90856 0.91649 0.91236 0.89126 0.92647 0.77459 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 10.45 101.05 1.06 0.28 16 2 S -0.18 -1.82 21.04 -107.50 -2.26 -4.09 16 3 C -0.09 -0.76 3.18 -27.88 -0.09 -0.85 16 4 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.14 -0.85 9.08 37.16 0.34 -0.51 16 6 C 0.53 5.98 7.00 -10.98 -0.08 5.91 16 7 O -0.51 -8.12 15.77 5.56 0.09 -8.03 16 8 N -0.71 -6.76 3.60 -51.43 -0.19 -6.95 16 9 C 0.11 1.40 2.26 -65.48 -0.15 1.25 16 10 H 0.10 1.40 6.74 -51.93 -0.35 1.05 16 11 C -0.16 -2.03 5.40 -24.23 -0.13 -2.16 16 12 C 0.06 0.88 4.20 -61.65 -0.26 0.62 16 13 H 0.14 2.49 6.40 -51.93 -0.33 2.16 16 14 C -0.12 -1.33 6.46 -24.24 -0.16 -1.49 16 15 C -0.11 -1.22 6.32 -24.24 -0.15 -1.37 16 16 C 0.03 0.46 4.78 -62.59 -0.30 0.16 16 17 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 18 N -0.47 -7.75 5.47 -205.74 -1.13 -8.88 16 19 C 0.02 0.40 5.24 -4.98 -0.03 0.38 16 20 C 0.45 10.46 7.55 -10.98 -0.08 10.38 16 21 O -0.58 -15.30 13.83 5.55 0.08 -15.22 16 22 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 23 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 24 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.74 13.05 55.50 0.72 -24.02 16 27 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 31 H 0.10 0.50 8.14 -51.92 -0.42 0.07 16 32 H 0.08 0.34 7.14 -51.93 -0.37 -0.03 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.30 6.92 -51.93 -0.36 -0.06 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.40 2.66 8.01 -40.82 -0.33 2.33 16 38 H 0.08 1.19 7.36 -51.93 -0.38 0.81 16 39 H 0.07 0.74 7.35 -51.93 -0.38 0.36 16 40 H 0.06 0.57 7.84 -51.93 -0.41 0.16 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.57 6.46 -51.93 -0.34 0.23 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.06 0.94 4.87 -51.93 -0.25 0.69 16 46 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 47 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 381.79 15.07 5.75 5.75 Total: -1.00 -33.36 381.79 -9.42 -42.78 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: -7.14 Total: 12.31 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.27 Total: 4.64 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.65 Total: -54.23 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: 0.16 Total: -23.26 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Atomic # 16 Polarization: -1.82 SS G_CDS: -2.26 Total: -4.09 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.36 -9.42 -42.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108969576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.715 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds