Wall clock time and date at job start Wed Apr 1 2020 00:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.81402 * 102.99669 * 2 1 4 4 H 1.08998 * 109.47344 * 305.00303 * 3 2 1 5 5 C 1.53000 * 109.46885 * 65.00287 * 3 2 1 6 6 C 1.50709 * 109.46796 * 184.99848 * 3 2 1 7 7 O 1.21280 * 120.00205 * 340.00397 * 6 3 2 8 8 N 1.34780 * 119.99161 * 160.00303 * 6 3 2 9 9 C 1.46499 * 119.99372 * 179.72592 * 8 6 3 10 10 H 1.09005 * 110.55112 * 36.88587 * 9 8 6 11 11 C 1.54831 * 110.61327 * 159.92106 * 9 8 6 12 12 C 1.55867 * 103.50959 * 117.40545 * 11 9 8 13 13 H 1.09000 * 115.89508 * 159.82956 * 12 11 9 14 14 C 1.55848 * 105.72211 * 289.26656 * 12 11 9 15 15 C 1.54834 * 103.52158 * 71.48785 * 14 12 11 16 16 C 1.55847 * 103.51558 * 359.97438 * 15 14 12 17 17 H 1.09007 * 115.58410 * 159.64256 * 16 15 14 18 18 N 1.50654 * 101.73777 * 33.22795 * 16 15 14 19 19 C 1.46895 * 111.00246 * 189.57059 * 18 16 15 20 20 C 1.50704 * 109.47091 * 169.99517 * 19 18 16 21 21 O 1.21294 * 119.99813 * 0.02562 * 20 19 18 22 22 N 1.34776 * 120.00305 * 179.97438 * 20 19 18 23 23 C 1.37098 * 120.00158 * 180.02562 * 22 20 19 24 24 H 1.08003 * 119.99920 * 0.02562 * 23 22 20 25 25 C 1.38947 * 119.99539 * 180.02562 * 23 22 20 26 26 N 1.31409 * 120.00685 * 0.02562 * 25 23 22 27 27 Si 1.86801 * 119.99619 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47166 * 0.02562 * 27 25 23 29 29 H 1.48496 * 109.47380 * 119.99698 * 27 25 23 30 30 H 1.48503 * 109.47357 * 239.99843 * 27 25 23 31 31 H 1.09009 * 109.46753 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47184 * 299.99531 * 1 2 3 33 33 H 1.08996 * 109.47135 * 60.00239 * 1 2 3 34 34 H 1.08997 * 109.46911 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47025 * 299.99977 * 5 3 2 36 36 H 1.08998 * 109.47116 * 59.99877 * 5 3 2 37 37 H 0.96994 * 120.00808 * 0.02562 * 8 6 3 38 38 H 1.09000 * 110.61579 * 237.01101 * 11 9 8 39 39 H 1.08997 * 110.61210 * 0.02562 * 11 9 8 40 40 H 1.09002 * 110.61382 * 312.97554 * 14 12 11 41 41 H 1.09006 * 110.61507 * 189.99349 * 14 12 11 42 42 H 1.08994 * 110.61671 * 241.49200 * 15 14 12 43 43 H 1.09002 * 110.61410 * 118.50198 * 15 14 12 44 44 H 1.08997 * 109.47320 * 289.99466 * 19 18 16 45 45 H 1.09005 * 109.47125 * 49.99985 * 19 18 16 46 46 H 0.97000 * 119.99626 * 0.02562 * 22 20 19 47 47 H 0.97000 * 120.00265 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2219 1.7676 0.0000 4 1 1.7293 2.2542 -0.8418 5 6 1.7427 2.4015 1.3074 6 6 3.7142 1.9386 -0.1238 7 8 4.4551 1.0200 0.1555 8 7 4.2251 3.1126 -0.5450 9 6 5.6758 3.2809 -0.6596 10 1 6.1413 2.3600 -1.0112 11 6 6.0149 4.4614 -1.6023 12 6 6.7604 5.4667 -0.6734 13 1 7.3842 6.2062 -1.1756 14 6 5.6740 6.0419 0.2846 15 6 5.3521 4.8527 1.2225 16 6 6.2866 3.7177 0.7054 17 1 6.4837 2.9116 1.4122 18 7 7.4905 4.4977 0.2453 19 6 8.4231 3.6381 -0.4958 20 6 9.4824 4.4898 -1.1465 21 8 9.4627 5.6945 -1.0062 22 7 10.4523 3.9130 -1.8834 23 6 11.4163 4.6879 -2.4750 24 1 11.3988 5.7605 -2.3501 25 6 12.4158 4.0931 -3.2351 26 7 12.4369 2.7880 -3.3875 27 14 13.7297 5.1488 -4.0405 28 1 13.4838 6.5772 -3.7175 29 1 15.0663 4.7497 -3.5313 30 1 13.6840 4.9587 -5.5126 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.9882 3.4635 1.3076 35 1 0.6635 2.2777 1.3970 36 1 2.2353 1.9149 2.1492 37 1 3.6325 3.8474 -0.7680 38 1 6.6503 4.1272 -2.4225 39 1 5.1035 4.9216 -1.9840 40 1 4.7875 6.3399 -0.2753 41 1 6.0704 6.8829 0.8536 42 1 4.3062 4.5612 1.1275 43 1 5.5891 5.1042 2.2563 44 1 8.8937 2.9351 0.1916 45 1 7.8783 3.0872 -1.2625 46 1 10.4683 2.9496 -1.9953 47 1 13.1345 2.3729 -3.9185 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108969576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:45 Heat of formation + Delta-G solvation = -61.177230 kcal Electronic energy + Delta-G solvation = -28358.840558 eV Core-core repulsion = 24474.719322 eV Total energy + Delta-G solvation = -3884.121237 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.38313 -40.47693 -39.60596 -36.03169 -35.42518 -34.14699 -33.46974 -32.93189 -30.82898 -29.81404 -29.39108 -28.09724 -26.04809 -25.53708 -23.17733 -22.10790 -21.63864 -20.64446 -20.49209 -19.77574 -18.55071 -18.01191 -17.60768 -17.09740 -16.86415 -16.79166 -16.44868 -15.98090 -15.81829 -15.58261 -15.17994 -15.05757 -14.58719 -14.37156 -14.09455 -13.94874 -13.76139 -13.60104 -13.40496 -13.28624 -13.20854 -13.01208 -12.95439 -12.76913 -12.70392 -12.64999 -12.51574 -12.40986 -12.11980 -11.88143 -11.72893 -11.47593 -11.15979 -10.98225 -10.76980 -10.40909 -10.26457 -10.02911 -9.35720 -8.71374 -8.48027 -5.97202 0.48837 1.35091 1.40153 1.50032 1.54796 1.66625 1.99322 2.07381 2.26908 2.74491 3.17877 3.21413 3.48986 3.56886 3.64875 3.78068 3.88176 3.99576 4.11161 4.12933 4.18418 4.27738 4.36877 4.37715 4.39200 4.41576 4.50295 4.51312 4.65666 4.71472 4.75406 4.78745 4.90532 4.94687 4.98984 5.18312 5.19360 5.25769 5.32749 5.39397 5.42538 5.71477 5.83312 6.04722 6.43489 6.57311 7.10382 7.15355 7.53062 8.07797 8.69838 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019825 B = 0.002425 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.050875 B =11543.925717 C =12493.889678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.278 6.278 3 C -0.074 4.074 4 H 0.137 0.863 5 C -0.139 4.139 6 C 0.528 3.472 7 O -0.565 6.565 8 N -0.691 5.691 9 C 0.125 3.875 10 H 0.067 0.933 11 C -0.150 4.150 12 C 0.047 3.953 13 H 0.097 0.903 14 C -0.105 4.105 15 C -0.101 4.101 16 C 0.033 3.967 17 H 0.102 0.898 18 N -0.490 5.490 19 C 0.036 3.964 20 C 0.446 3.554 21 O -0.611 6.611 22 N -0.575 5.575 23 C -0.329 4.329 24 H 0.082 0.918 25 C -0.016 4.016 26 N -0.923 5.923 27 Si 0.995 3.005 28 H -0.271 1.271 29 H -0.272 1.272 30 H -0.270 1.270 31 H 0.108 0.892 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.419 0.581 38 H 0.058 0.942 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.068 0.932 46 H 0.394 0.606 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.908 -0.184 6.298 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.053 6.053 3 C -0.206 4.206 4 H 0.155 0.845 5 C -0.198 4.198 6 C 0.314 3.686 7 O -0.443 6.443 8 N -0.345 5.345 9 C 0.018 3.982 10 H 0.085 0.915 11 C -0.189 4.189 12 C -0.061 4.061 13 H 0.115 0.885 14 C -0.142 4.142 15 C -0.138 4.138 16 C -0.077 4.077 17 H 0.120 0.880 18 N -0.214 5.214 19 C -0.096 4.096 20 C 0.234 3.766 21 O -0.497 6.497 22 N -0.212 5.212 23 C -0.459 4.459 24 H 0.100 0.900 25 C -0.216 4.216 26 N -0.564 5.564 27 Si 0.819 3.181 28 H -0.195 1.195 29 H -0.198 1.198 30 H -0.195 1.195 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.258 0.742 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.087 0.913 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.227 0.773 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.203 -0.766 6.936 28.084 hybrid contribution 0.036 0.324 -1.386 1.424 sum -27.167 -0.442 5.550 27.732 Atomic orbital electron populations 1.23565 0.91122 1.07579 1.06393 1.87924 1.09950 1.09272 1.98109 1.23295 0.94710 0.96807 1.05791 0.84516 1.22025 1.03023 1.01846 0.92887 1.20258 0.89997 0.82215 0.76128 1.90763 1.61876 1.41693 1.49992 1.45732 1.06743 1.14659 1.67346 1.22454 0.81196 0.98161 0.96388 0.91472 1.23410 1.02329 0.95552 0.97597 1.24783 0.93554 0.95008 0.92773 0.88537 1.22590 0.97336 0.97587 0.96737 1.22535 0.98928 0.92969 0.99410 1.24820 0.89961 0.96709 0.96171 0.88013 1.67835 1.10547 1.12098 1.30912 1.21966 0.94256 0.95318 0.98052 1.20527 0.84662 0.88845 0.82590 1.90450 1.77468 1.16292 1.65504 1.41964 1.24428 1.09769 1.45027 1.19706 1.05415 0.92410 1.28353 0.90031 1.26097 1.00400 0.97316 0.97754 1.69695 1.35708 1.10077 1.40916 0.84840 0.77376 0.77967 0.77962 1.19545 1.19757 1.19532 0.87315 0.88714 0.89001 0.88857 0.89121 0.92434 0.74242 0.92367 0.87057 0.88067 0.91770 0.88464 0.91274 0.88695 0.91419 0.77309 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.45 113.37 1.18 0.23 16 2 S -0.28 -5.20 21.04 -56.49 -1.19 -6.39 16 3 C -0.07 -0.98 3.18 29.85 0.09 -0.88 16 4 H 0.14 0.95 8.14 -2.39 -0.02 0.93 16 5 C -0.14 -1.14 9.08 71.98 0.65 -0.48 16 6 C 0.53 10.96 7.00 87.66 0.61 11.58 16 7 O -0.57 -18.03 15.77 -3.03 -0.05 -18.07 16 8 N -0.69 -11.22 3.60 -435.02 -1.57 -12.79 16 9 C 0.13 2.97 2.26 46.58 0.11 3.07 16 10 H 0.07 2.01 6.74 -2.38 -0.02 2.00 16 11 C -0.15 -3.60 5.40 32.21 0.17 -3.42 16 12 C 0.05 1.38 4.20 45.84 0.19 1.57 16 13 H 0.10 3.68 6.40 -2.39 -0.02 3.67 16 14 C -0.10 -2.13 6.46 32.21 0.21 -1.92 16 15 C -0.10 -1.90 6.32 32.20 0.20 -1.69 16 16 C 0.03 0.86 4.78 46.12 0.22 1.08 16 17 H 0.10 2.88 8.14 -2.38 -0.02 2.86 16 18 N -0.49 -16.56 5.47 -804.82 -4.40 -20.96 16 19 C 0.04 1.37 5.24 85.56 0.45 1.82 16 20 C 0.45 21.95 7.55 87.66 0.66 22.62 16 21 O -0.61 -33.70 13.83 -3.07 -0.04 -33.74 16 22 N -0.57 -30.59 5.29 -306.98 -1.62 -32.21 16 23 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 24 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 25 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 26 N -0.92 -51.30 13.05 21.66 0.28 -51.02 16 27 Si 1.00 43.67 29.55 68.60 2.03 45.69 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 30 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 31 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.46 7.14 -2.39 -0.02 0.45 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.09 0.38 6.92 -2.39 -0.02 0.36 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.42 3.51 8.01 -92.71 -0.74 2.77 16 38 H 0.06 1.70 7.36 -2.39 -0.02 1.68 16 39 H 0.11 1.82 7.35 -2.39 -0.02 1.80 16 40 H 0.10 1.31 7.84 -2.39 -0.02 1.29 16 41 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 42 H 0.10 1.22 6.46 -2.39 -0.02 1.21 16 43 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 45 H 0.07 2.41 4.87 -2.38 -0.01 2.40 16 46 H 0.39 20.33 7.90 -92.71 -0.73 19.60 16 47 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -78.02 381.79 -0.99 -79.01 By element: Atomic # 1 Polarization: 36.02 SS G_CDS: -0.47 Total: 35.55 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 6.04 Total: 14.93 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -7.31 Total: -116.98 kcal Atomic # 8 Polarization: -51.73 SS G_CDS: -0.09 Total: -51.82 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -5.20 SS G_CDS: -1.19 Total: -6.39 kcal Total: -78.02 -0.99 -79.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108969576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.831 kcal (2) G-P(sol) polarization free energy of solvation -78.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds