Wall clock time and date at job start Wed Apr 1 2020 00:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 102.99783 * 2 1 4 4 H 1.09000 * 109.47389 * 55.00224 * 3 2 1 5 5 C 1.53001 * 109.47386 * 294.99944 * 3 2 1 6 6 C 1.50695 * 109.47259 * 174.99958 * 3 2 1 7 7 O 1.21289 * 119.99633 * 24.99841 * 6 3 2 8 8 N 1.34770 * 120.00504 * 205.27746 * 6 3 2 9 9 C 1.46497 * 120.00208 * 179.72714 * 8 6 3 10 10 H 1.08999 * 110.55215 * 36.93154 * 9 8 6 11 11 C 1.54841 * 110.61392 * 159.96880 * 9 8 6 12 12 C 1.55853 * 103.52057 * 118.50391 * 11 9 8 13 13 H 1.09000 * 116.14842 * 159.22209 * 12 11 9 14 14 C 1.55839 * 105.03442 * 288.27517 * 12 11 9 15 15 C 1.54832 * 103.52245 * 71.72462 * 14 12 11 16 16 C 1.55845 * 103.51879 * 0.02562 * 15 14 12 17 17 H 1.09000 * 115.58030 * 159.64064 * 16 15 14 18 18 N 1.50649 * 101.02938 * 32.99214 * 16 15 14 19 19 C 1.46898 * 111.00450 * 189.76415 * 18 16 15 20 20 C 1.50699 * 109.47415 * 169.99851 * 19 18 16 21 21 O 1.21296 * 120.00055 * 0.02562 * 20 19 18 22 22 N 1.34771 * 120.00292 * 179.97438 * 20 19 18 23 23 C 1.37095 * 120.00369 * 179.97438 * 22 20 19 24 24 H 1.08002 * 119.99712 * 0.02562 * 23 22 20 25 25 C 1.38952 * 119.99981 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99842 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00023 * 0.02562 * 25 23 22 28 28 H 1.48508 * 109.46881 * 89.99926 * 27 25 23 29 29 H 1.48499 * 109.46815 * 209.99371 * 27 25 23 30 30 H 1.48489 * 109.47341 * 329.99808 * 27 25 23 31 31 H 1.09001 * 109.47388 * 60.00187 * 1 2 3 32 32 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47006 * 300.00175 * 1 2 3 34 34 H 1.08999 * 109.47290 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47085 * 300.00466 * 5 3 2 36 36 H 1.09010 * 109.46653 * 59.99762 * 5 3 2 37 37 H 0.97001 * 119.99699 * 359.71538 * 8 6 3 38 38 H 1.08999 * 110.61082 * 237.01030 * 11 9 8 39 39 H 1.08995 * 110.61032 * 359.97438 * 11 9 8 40 40 H 1.09006 * 110.61146 * 313.21734 * 14 12 11 41 41 H 1.08994 * 110.61656 * 190.23691 * 14 12 11 42 42 H 1.08999 * 110.61473 * 241.49015 * 15 14 12 43 43 H 1.09003 * 110.61414 * 118.51174 * 15 14 12 44 44 H 1.09008 * 109.46828 * 290.00094 * 19 18 16 45 45 H 1.08995 * 109.47234 * 49.99392 * 19 18 16 46 46 H 0.97007 * 119.99483 * 0.02562 * 22 20 19 47 47 H 0.96996 * 120.00105 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7141 1.9387 0.1238 7 8 4.4584 1.0532 -0.2409 8 7 4.2214 3.0733 0.6450 9 6 5.6717 3.2372 0.7709 10 1 6.1829 2.7877 -0.0805 11 6 6.0416 4.7348 0.9045 12 6 6.7240 4.8182 2.3032 13 1 7.3710 5.6791 2.4715 14 6 5.5657 4.6359 3.3297 15 6 5.1958 3.1383 3.1961 16 6 6.1806 2.6156 2.1071 17 1 6.3391 1.5373 2.0945 18 7 7.3915 3.4693 2.3799 19 6 8.3936 3.3168 1.3167 20 6 9.4712 4.3561 1.4891 21 8 9.4106 5.1460 2.4077 22 7 10.5027 4.4074 0.6234 23 6 11.4827 5.3533 0.7799 24 1 11.4283 6.0571 1.5973 25 6 12.5465 5.4058 -0.1125 26 7 13.4861 6.3121 0.0378 27 14 12.6409 4.1880 -1.5259 28 1 11.9429 4.7493 -2.7104 29 1 14.0640 3.9327 -1.8649 30 1 11.9911 2.9142 -1.1260 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.9884 3.4636 -1.3075 35 1 2.2354 1.9150 -2.1492 36 1 0.6634 2.2778 -1.3969 37 1 3.6262 3.7815 0.9366 38 1 6.7380 5.0296 0.1196 39 1 5.1458 5.3552 0.8767 40 1 4.7163 5.2660 3.0657 41 1 5.9097 4.8575 4.3399 42 1 4.1631 3.0261 2.8658 43 1 5.3566 2.6176 4.1401 44 1 8.8357 2.3221 1.3742 45 1 7.9158 3.4464 0.3457 46 1 10.5514 3.7755 -0.1110 47 1 14.2285 6.3490 -0.5853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108969578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:48 Heat of formation + Delta-G solvation = -28.979048 kcal Electronic energy + Delta-G solvation = -28403.963528 eV Core-core repulsion = 24521.238509 eV Total energy + Delta-G solvation = -3882.725019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40197 -39.50151 -38.00394 -34.59810 -33.98322 -33.53306 -32.07493 -31.55790 -29.84432 -29.29563 -28.56375 -26.67009 -25.06060 -23.97871 -22.23896 -21.18199 -20.25759 -19.56264 -19.26209 -18.18055 -17.68384 -17.15291 -16.31359 -16.09633 -15.78037 -15.54027 -15.07403 -14.83639 -14.74540 -14.49248 -14.11182 -13.97841 -13.42639 -13.41638 -13.11057 -12.86099 -12.77478 -12.75857 -12.45039 -12.40764 -12.19650 -12.11878 -11.97426 -11.79802 -11.68485 -11.41828 -11.15448 -10.82262 -10.75700 -10.56698 -10.26452 -10.20339 -10.12423 -9.97342 -9.55170 -9.43237 -8.54316 -8.21163 -8.13195 -8.04903 -6.31284 -3.82565 1.03841 2.07745 2.35341 2.82709 3.04693 3.08190 3.16404 3.73024 3.89472 4.10847 4.19723 4.32154 4.43264 4.50244 4.58379 4.64921 4.67162 4.71194 4.90226 4.98783 5.08662 5.08989 5.11481 5.19408 5.25377 5.28330 5.36147 5.38628 5.54104 5.55693 5.58375 5.79681 5.85105 5.88789 5.89893 5.95039 6.13415 6.17326 6.30708 6.46837 6.82008 7.10700 7.15020 7.58007 7.88781 8.14126 8.59701 8.94790 9.42465 9.82692 10.81678 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002619 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.112438 B =10689.280316 C =11640.649019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.186 6.186 3 C -0.094 4.094 4 H 0.106 0.894 5 C -0.142 4.142 6 C 0.533 3.467 7 O -0.515 6.515 8 N -0.709 5.709 9 C 0.112 3.888 10 H 0.094 0.906 11 C -0.163 4.163 12 C 0.057 3.943 13 H 0.140 0.860 14 C -0.117 4.117 15 C -0.112 4.112 16 C 0.035 3.965 17 H 0.115 0.885 18 N -0.463 5.463 19 C 0.017 3.983 20 C 0.454 3.546 21 O -0.563 6.563 22 N -0.590 5.590 23 C -0.304 4.304 24 H 0.120 0.880 25 C 0.042 3.958 26 N -0.881 5.881 27 Si 0.878 3.122 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.268 1.268 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.400 0.600 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.057 0.943 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.397 -8.270 -1.396 29.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.039 5.961 3 C -0.226 4.226 4 H 0.124 0.876 5 C -0.201 4.201 6 C 0.316 3.684 7 O -0.389 6.389 8 N -0.361 5.361 9 C 0.006 3.994 10 H 0.112 0.888 11 C -0.202 4.202 12 C -0.051 4.051 13 H 0.158 0.842 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.075 4.075 17 H 0.133 0.867 18 N -0.185 5.185 19 C -0.115 4.115 20 C 0.240 3.760 21 O -0.445 6.445 22 N -0.229 5.229 23 C -0.433 4.433 24 H 0.138 0.862 25 C -0.161 4.161 26 N -0.521 5.521 27 Si 0.704 3.296 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.194 1.194 31 H 0.096 0.904 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.235 0.765 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.110 0.890 45 H 0.074 0.926 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -26.648 -9.290 -0.558 28.227 hybrid contribution -1.255 0.607 -1.965 2.409 sum -27.904 -8.683 -2.522 29.332 Atomic orbital electron populations 1.23558 0.95677 1.06749 1.04896 1.87538 1.04855 1.05832 1.97832 1.23330 0.97331 0.98580 1.03353 0.87624 1.21997 1.01919 1.01148 0.95082 1.19628 0.88678 0.82536 0.77549 1.90771 1.60095 1.40416 1.47668 1.45964 1.07866 1.18641 1.63626 1.22857 0.79837 0.96600 1.00100 0.88809 1.23568 1.01625 0.94142 1.00844 1.24707 0.93850 0.94832 0.91753 0.84208 1.22638 0.96981 0.95584 1.00286 1.22532 0.97665 0.96227 0.98569 1.24848 0.90821 0.98602 0.93182 0.86730 1.67565 1.06533 1.04046 1.40367 1.22211 0.94463 1.00440 0.94368 1.19565 0.84086 0.87471 0.84849 1.90513 1.77694 1.43313 1.33030 1.42219 1.22274 1.31625 1.26766 1.19417 0.99528 1.10158 1.14150 0.86249 1.25036 0.95732 0.97266 0.98101 1.69619 1.11440 1.33651 1.37379 0.86694 0.78726 0.81251 0.82910 1.19667 1.20137 1.19383 0.90367 0.87742 0.90519 0.91121 0.90470 0.91266 0.76540 0.90114 0.90452 0.91885 0.90818 0.91660 0.91154 0.89011 0.92550 0.79686 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.71 10.45 101.05 1.06 0.35 16 2 S -0.19 -1.73 21.10 -107.50 -2.27 -4.00 16 3 C -0.09 -0.71 3.17 -27.88 -0.09 -0.80 16 4 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 5 C -0.14 -0.84 9.08 37.16 0.34 -0.50 16 6 C 0.53 5.67 6.95 -10.99 -0.08 5.60 16 7 O -0.51 -7.78 15.87 5.55 0.09 -7.69 16 8 N -0.71 -6.33 3.63 -51.37 -0.19 -6.52 16 9 C 0.11 1.30 2.26 -65.41 -0.15 1.15 16 10 H 0.09 1.27 6.75 -51.93 -0.35 0.92 16 11 C -0.16 -1.92 5.39 -24.24 -0.13 -2.05 16 12 C 0.06 0.82 4.13 -62.54 -0.26 0.57 16 13 H 0.14 2.52 6.28 -51.93 -0.33 2.19 16 14 C -0.12 -1.33 6.43 -24.25 -0.16 -1.49 16 15 C -0.11 -1.21 6.32 -24.25 -0.15 -1.36 16 16 C 0.04 0.46 4.83 -62.53 -0.30 0.16 16 17 H 0.11 1.56 8.14 -51.93 -0.42 1.13 16 18 N -0.46 -7.40 5.44 -206.94 -1.13 -8.53 16 19 C 0.02 0.30 5.24 -4.98 -0.03 0.27 16 20 C 0.45 10.22 7.53 -10.99 -0.08 10.14 16 21 O -0.56 -14.59 13.74 5.54 0.08 -14.51 16 22 N -0.59 -14.05 5.09 -10.96 -0.06 -14.11 16 23 C -0.30 -8.55 10.16 -14.93 -0.15 -8.70 16 24 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 25 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 26 N -0.88 -25.72 13.96 55.50 0.77 -24.94 16 27 Si 0.88 19.57 27.74 -169.99 -4.71 14.86 16 28 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 31 H 0.08 0.31 7.14 -51.92 -0.37 -0.06 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.31 8.14 -51.92 -0.42 -0.12 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.29 6.92 -51.92 -0.36 -0.06 16 37 H 0.40 2.45 8.02 -40.82 -0.33 2.12 16 38 H 0.08 1.07 7.37 -51.93 -0.38 0.69 16 39 H 0.08 0.72 7.34 -51.93 -0.38 0.34 16 40 H 0.06 0.56 7.82 -51.93 -0.41 0.15 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.58 6.48 -51.93 -0.34 0.24 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.09 1.49 8.14 -51.92 -0.42 1.07 16 45 H 0.06 0.87 4.88 -51.93 -0.25 0.62 16 46 H 0.37 7.88 5.76 -40.82 -0.24 7.64 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -34.30 378.48 -9.07 -43.38 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: -7.09 Total: 11.99 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -0.28 Total: 4.38 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -0.59 Total: -54.10 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.16 Total: -22.20 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.86 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.27 Total: -4.00 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.30 -9.07 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108969578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.397 kcal (2) G-P(sol) polarization free energy of solvation -34.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds