Wall clock time and date at job start Wed Apr 1 2020 00:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81400 * 102.99783 * 2 1 4 4 H 1.09000 * 109.47389 * 55.00224 * 3 2 1 5 5 C 1.53001 * 109.47386 * 294.99944 * 3 2 1 6 6 C 1.50695 * 109.47259 * 174.99958 * 3 2 1 7 7 O 1.21289 * 119.99633 * 24.99841 * 6 3 2 8 8 N 1.34770 * 120.00504 * 205.27746 * 6 3 2 9 9 C 1.46497 * 120.00208 * 179.72714 * 8 6 3 10 10 H 1.08999 * 110.55215 * 36.93154 * 9 8 6 11 11 C 1.54841 * 110.61392 * 159.96880 * 9 8 6 12 12 C 1.55853 * 103.52057 * 118.50391 * 11 9 8 13 13 H 1.09000 * 116.14842 * 159.22209 * 12 11 9 14 14 C 1.55839 * 105.03442 * 288.27517 * 12 11 9 15 15 C 1.54832 * 103.52245 * 71.72462 * 14 12 11 16 16 C 1.55845 * 103.51879 * 0.02562 * 15 14 12 17 17 H 1.09000 * 115.58030 * 159.64064 * 16 15 14 18 18 N 1.50649 * 101.02938 * 32.99214 * 16 15 14 19 19 C 1.46898 * 111.00450 * 189.76415 * 18 16 15 20 20 C 1.50699 * 109.47415 * 169.99851 * 19 18 16 21 21 O 1.21296 * 120.00055 * 0.02562 * 20 19 18 22 22 N 1.34771 * 120.00292 * 179.97438 * 20 19 18 23 23 C 1.37095 * 120.00369 * 179.97438 * 22 20 19 24 24 H 1.08002 * 119.99712 * 0.02562 * 23 22 20 25 25 C 1.38952 * 119.99981 * 179.97438 * 23 22 20 26 26 N 1.31412 * 119.99842 * 180.02562 * 25 23 22 27 27 Si 1.86799 * 120.00023 * 0.02562 * 25 23 22 28 28 H 1.48508 * 109.46881 * 89.99926 * 27 25 23 29 29 H 1.48499 * 109.46815 * 209.99371 * 27 25 23 30 30 H 1.48489 * 109.47341 * 329.99808 * 27 25 23 31 31 H 1.09001 * 109.47388 * 60.00187 * 1 2 3 32 32 H 1.08998 * 109.46868 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.47006 * 300.00175 * 1 2 3 34 34 H 1.08999 * 109.47290 * 180.02562 * 5 3 2 35 35 H 1.09000 * 109.47085 * 300.00466 * 5 3 2 36 36 H 1.09010 * 109.46653 * 59.99762 * 5 3 2 37 37 H 0.97001 * 119.99699 * 359.71538 * 8 6 3 38 38 H 1.08999 * 110.61082 * 237.01030 * 11 9 8 39 39 H 1.08995 * 110.61032 * 359.97438 * 11 9 8 40 40 H 1.09006 * 110.61146 * 313.21734 * 14 12 11 41 41 H 1.08994 * 110.61656 * 190.23691 * 14 12 11 42 42 H 1.08999 * 110.61473 * 241.49015 * 15 14 12 43 43 H 1.09003 * 110.61414 * 118.51174 * 15 14 12 44 44 H 1.09008 * 109.46828 * 290.00094 * 19 18 16 45 45 H 1.08995 * 109.47234 * 49.99392 * 19 18 16 46 46 H 0.97007 * 119.99483 * 0.02562 * 22 20 19 47 47 H 0.96996 * 120.00105 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7295 2.2542 0.8418 5 6 1.7428 2.4016 -1.3073 6 6 3.7141 1.9387 0.1238 7 8 4.4584 1.0532 -0.2409 8 7 4.2214 3.0733 0.6450 9 6 5.6717 3.2372 0.7709 10 1 6.1829 2.7877 -0.0805 11 6 6.0416 4.7348 0.9045 12 6 6.7240 4.8182 2.3032 13 1 7.3710 5.6791 2.4715 14 6 5.5657 4.6359 3.3297 15 6 5.1958 3.1383 3.1961 16 6 6.1806 2.6156 2.1071 17 1 6.3391 1.5373 2.0945 18 7 7.3915 3.4693 2.3799 19 6 8.3936 3.3168 1.3167 20 6 9.4712 4.3561 1.4891 21 8 9.4106 5.1460 2.4077 22 7 10.5027 4.4074 0.6234 23 6 11.4827 5.3533 0.7799 24 1 11.4283 6.0571 1.5973 25 6 12.5465 5.4058 -0.1125 26 7 13.4861 6.3121 0.0378 27 14 12.6409 4.1880 -1.5259 28 1 11.9429 4.7493 -2.7104 29 1 14.0640 3.9327 -1.8649 30 1 11.9911 2.9142 -1.1260 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.9884 3.4636 -1.3075 35 1 2.2354 1.9150 -2.1492 36 1 0.6634 2.2778 -1.3969 37 1 3.6262 3.7815 0.9366 38 1 6.7380 5.0296 0.1196 39 1 5.1458 5.3552 0.8767 40 1 4.7163 5.2660 3.0657 41 1 5.9097 4.8575 4.3399 42 1 4.1631 3.0261 2.8658 43 1 5.3566 2.6176 4.1401 44 1 8.8357 2.3221 1.3742 45 1 7.9158 3.4464 0.3457 46 1 10.5514 3.7755 -0.1110 47 1 14.2285 6.3490 -0.5853 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108969578.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:47 Heat of formation + Delta-G solvation = -55.851994 kcal Electronic energy + Delta-G solvation = -28405.128826 eV Core-core repulsion = 24521.238509 eV Total energy + Delta-G solvation = -3883.890317 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.45946 -40.53113 -39.73011 -36.07739 -35.42433 -34.17260 -33.82149 -33.09667 -30.84242 -29.82965 -29.41198 -28.23612 -25.88709 -25.55265 -23.12808 -22.06105 -21.62446 -21.06969 -20.54311 -19.97363 -18.49347 -18.01140 -17.62851 -17.13362 -16.92225 -16.87138 -16.59565 -15.97258 -15.71019 -15.28903 -15.20598 -15.07972 -14.63773 -14.39074 -14.31296 -14.22166 -13.80026 -13.75792 -13.52035 -13.32073 -13.24738 -13.08255 -12.93095 -12.80228 -12.69808 -12.63541 -12.53950 -12.44230 -12.01669 -11.89837 -11.72358 -11.48201 -11.15771 -10.98193 -10.77638 -10.42279 -10.33240 -10.25140 -9.37529 -8.70000 -8.43270 -6.03324 0.47948 1.28690 1.31541 1.40943 1.50457 1.68151 1.90430 2.06577 2.19877 2.60933 3.08385 3.12746 3.47871 3.54886 3.65044 3.77668 3.85452 3.99809 4.03403 4.11915 4.16996 4.20049 4.35731 4.37550 4.39485 4.40393 4.44827 4.51122 4.62788 4.68672 4.73505 4.78855 4.90945 4.94648 4.99252 5.14073 5.19680 5.24323 5.31873 5.42497 5.50982 5.73348 5.85174 5.98538 6.43843 6.56902 6.85789 7.15252 7.36861 7.92504 8.74038 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017627 B = 0.002619 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.112438 B =10689.280316 C =11640.649019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.272 6.272 3 C -0.075 4.075 4 H 0.139 0.861 5 C -0.140 4.140 6 C 0.530 3.470 7 O -0.564 6.564 8 N -0.692 5.692 9 C 0.125 3.875 10 H 0.076 0.924 11 C -0.150 4.150 12 C 0.043 3.957 13 H 0.097 0.903 14 C -0.107 4.107 15 C -0.102 4.102 16 C 0.035 3.965 17 H 0.107 0.893 18 N -0.490 5.490 19 C 0.030 3.970 20 C 0.457 3.543 21 O -0.602 6.602 22 N -0.592 5.592 23 C -0.324 4.324 24 H 0.059 0.941 25 C -0.012 4.012 26 N -0.931 5.931 27 Si 0.959 3.041 28 H -0.256 1.256 29 H -0.273 1.273 30 H -0.238 1.238 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.090 0.910 37 H 0.418 0.582 38 H 0.063 0.937 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.079 0.921 46 H 0.387 0.613 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.305 -9.547 -2.820 33.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.047 6.047 3 C -0.207 4.207 4 H 0.157 0.843 5 C -0.198 4.198 6 C 0.315 3.685 7 O -0.442 6.442 8 N -0.345 5.345 9 C 0.017 3.983 10 H 0.094 0.906 11 C -0.189 4.189 12 C -0.066 4.066 13 H 0.115 0.885 14 C -0.145 4.145 15 C -0.140 4.140 16 C -0.074 4.074 17 H 0.125 0.875 18 N -0.213 5.213 19 C -0.102 4.102 20 C 0.244 3.756 21 O -0.486 6.486 22 N -0.234 5.234 23 C -0.453 4.453 24 H 0.078 0.922 25 C -0.211 4.211 26 N -0.572 5.572 27 Si 0.779 3.221 28 H -0.180 1.180 29 H -0.198 1.198 30 H -0.162 1.162 31 H 0.111 0.889 32 H 0.127 0.873 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.257 0.743 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.078 0.922 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.097 0.903 46 H 0.222 0.778 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -30.612 -10.549 -1.962 32.438 hybrid contribution -0.089 1.085 -1.385 1.762 sum -30.701 -9.464 -3.347 32.300 Atomic orbital electron populations 1.23570 0.91223 1.07587 1.06370 1.87858 1.09870 1.08902 1.98082 1.23280 0.94914 0.96970 1.05519 0.84336 1.22007 1.03004 1.01618 0.93216 1.20198 0.89926 0.81913 0.76416 1.90758 1.61572 1.42157 1.49673 1.45750 1.06852 1.18913 1.63012 1.22500 0.81370 0.95805 0.98587 0.90603 1.23443 1.02346 0.94872 0.98258 1.24554 0.94409 0.92763 0.94837 0.88520 1.22613 0.96683 0.96677 0.98518 1.22527 0.98466 0.95306 0.97706 1.24853 0.89911 0.97826 0.94846 0.87514 1.67579 1.07879 1.05656 1.40198 1.22090 0.93324 0.98628 0.96153 1.20612 0.84229 0.87402 0.83322 1.90505 1.78546 1.45008 1.34500 1.42065 1.21937 1.31464 1.27915 1.18989 1.01823 1.10992 1.13496 0.92249 1.26032 0.94424 0.99465 1.01217 1.69788 1.12386 1.35949 1.39082 0.85442 0.79184 0.79145 0.78287 1.18042 1.19846 1.16158 0.88946 0.87282 0.88863 0.89392 0.92684 0.89118 0.74304 0.91862 0.87011 0.88319 0.92225 0.88758 0.91559 0.87632 0.90330 0.77795 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 10.45 113.37 1.19 0.36 16 2 S -0.27 -4.61 21.10 -56.49 -1.19 -5.80 16 3 C -0.08 -0.89 3.17 29.85 0.09 -0.79 16 4 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 5 C -0.14 -1.16 9.08 71.98 0.65 -0.50 16 6 C 0.53 9.94 6.95 87.66 0.61 10.55 16 7 O -0.56 -16.49 15.87 -3.06 -0.05 -16.54 16 8 N -0.69 -9.89 3.63 -434.84 -1.58 -11.48 16 9 C 0.12 2.61 2.26 46.63 0.11 2.71 16 10 H 0.08 1.93 6.75 -2.39 -0.02 1.91 16 11 C -0.15 -3.24 5.39 32.21 0.17 -3.07 16 12 C 0.04 1.22 4.13 46.14 0.19 1.41 16 13 H 0.10 3.67 6.28 -2.39 -0.01 3.66 16 14 C -0.11 -2.20 6.43 32.20 0.21 -1.99 16 15 C -0.10 -1.92 6.32 32.20 0.20 -1.72 16 16 C 0.04 0.85 4.83 46.17 0.22 1.07 16 17 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 18 N -0.49 -15.55 5.44 -808.63 -4.40 -19.95 16 19 C 0.03 1.02 5.24 85.56 0.45 1.47 16 20 C 0.46 21.18 7.53 87.66 0.66 21.84 16 21 O -0.60 -33.04 13.74 -3.08 -0.04 -33.08 16 22 N -0.59 -28.79 5.09 -306.99 -1.56 -30.35 16 23 C -0.32 -19.14 10.16 84.04 0.85 -18.29 16 24 H 0.06 4.14 7.39 -2.91 -0.02 4.12 16 25 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 26 N -0.93 -56.49 13.96 21.66 0.30 -56.19 16 27 Si 0.96 40.01 27.74 68.60 1.90 41.91 16 28 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 29 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 30 H -0.24 -8.68 6.52 99.48 0.65 -8.03 16 31 H 0.09 0.39 7.14 -2.39 -0.02 0.37 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.38 6.92 -2.38 -0.02 0.36 16 37 H 0.42 2.93 8.02 -92.71 -0.74 2.19 16 38 H 0.06 1.61 7.37 -2.39 -0.02 1.59 16 39 H 0.11 1.62 7.34 -2.39 -0.02 1.60 16 40 H 0.10 1.33 7.82 -2.38 -0.02 1.31 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.24 6.48 -2.39 -0.02 1.22 16 43 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.11 3.32 8.14 -2.38 -0.02 3.30 16 45 H 0.08 2.35 4.88 -2.39 -0.01 2.34 16 46 H 0.39 16.04 5.76 -92.70 -0.53 15.51 16 47 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -83.26 378.48 -0.87 -84.13 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: -0.33 Total: 34.52 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.08 Total: 12.82 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -7.24 Total: -117.96 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.09 Total: -49.62 kcal Atomic # 14 Polarization: 40.01 SS G_CDS: 1.90 Total: 41.91 kcal Atomic # 16 Polarization: -4.61 SS G_CDS: -1.19 Total: -5.80 kcal Total: -83.26 -0.87 -84.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108969578.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.281 kcal (2) G-P(sol) polarization free energy of solvation -83.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds