Wall clock time and date at job start Wed Apr 1 2020 00:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99525 * 2 1 4 4 O 1.21283 * 120.00463 * 0.02562 * 3 2 1 5 5 C 1.50700 * 119.99675 * 179.72583 * 3 2 1 6 6 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 7 7 C 1.52998 * 109.47092 * 300.27576 * 5 3 2 8 8 N 1.46904 * 109.47192 * 180.28082 * 5 3 2 9 9 C 1.50653 * 110.99562 * 288.09125 * 8 5 3 10 10 H 1.08999 * 115.88411 * 63.34839 * 9 8 5 11 11 C 1.55852 * 101.02739 * 297.64924 * 9 8 5 12 12 C 1.54829 * 103.51951 * 327.01074 * 11 9 8 13 13 C 1.50651 * 111.00249 * 179.97438 * 8 5 3 14 14 H 1.08998 * 115.88022 * 296.65099 * 13 8 5 15 15 C 1.55845 * 101.02891 * 170.23320 * 13 8 5 16 16 H 1.08996 * 110.61529 * 208.49804 * 15 13 8 17 17 N 1.46498 * 110.61103 * 85.51551 * 15 13 8 18 18 C 1.34776 * 120.00205 * 155.00223 * 17 15 13 19 19 O 1.21282 * 119.99630 * 359.97438 * 18 17 15 20 20 C 1.50698 * 120.00023 * 180.02562 * 18 17 15 21 21 S 1.81005 * 109.47091 * 179.97438 * 20 18 17 22 22 C 1.76196 * 100.00086 * 179.97438 * 21 20 18 23 23 H 1.07994 * 119.99974 * 359.97438 * 22 21 20 24 24 C 1.38800 * 119.99894 * 180.02562 * 22 21 20 25 25 N 1.31632 * 120.00028 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00033 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47040 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47594 * 119.99814 * 26 24 22 29 29 H 1.48498 * 109.47161 * 239.99781 * 26 24 22 30 30 C 1.54834 * 103.51857 * 327.00846 * 15 13 8 31 31 H 1.08995 * 109.47421 * 299.99467 * 1 2 3 32 32 H 1.09001 * 109.47621 * 60.00103 * 1 2 3 33 33 H 1.09008 * 109.47102 * 179.97438 * 1 2 3 34 34 H 0.97000 * 120.00580 * 180.02562 * 2 1 3 35 35 H 1.09006 * 109.47458 * 299.99989 * 7 5 3 36 36 H 1.09004 * 109.47239 * 60.00118 * 7 5 3 37 37 H 1.09005 * 109.47323 * 180.02562 * 7 5 3 38 38 H 1.08994 * 110.61343 * 208.49947 * 11 9 8 39 39 H 1.09003 * 110.74093 * 85.58177 * 11 9 8 40 40 H 1.09000 * 110.61367 * 241.48945 * 12 11 9 41 41 H 1.09001 * 110.74761 * 118.57165 * 12 11 9 42 42 H 0.97006 * 120.00239 * 334.99832 * 17 15 13 43 43 H 1.08999 * 109.47054 * 299.99505 * 20 18 17 44 44 H 1.09001 * 109.47346 * 59.99877 * 20 18 17 45 45 H 0.96996 * 119.99577 * 180.02562 * 25 24 22 46 46 H 1.08998 * 110.61187 * 241.48480 * 30 15 13 47 47 H 1.09004 * 110.61043 * 118.50640 * 30 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5323 2.2176 0.0005 5 6 3.6457 1.1673 0.0062 6 1 4.0129 0.6557 -0.8834 7 6 4.1506 0.4431 1.2558 8 7 4.1354 2.5523 0.0117 9 6 3.9091 3.2102 -1.3245 10 1 2.8686 3.3245 -1.6285 11 6 4.7860 2.3142 -2.2503 12 6 5.9639 1.8942 -1.3373 13 6 5.6413 2.5926 0.0187 14 1 6.1247 2.1636 0.8964 15 6 5.9002 4.1082 -0.2360 16 1 6.8524 4.2544 -0.7458 17 7 5.8678 4.8557 1.0235 18 6 6.5340 6.0223 1.1321 19 8 7.1606 6.4529 0.1872 20 6 6.5011 6.7909 2.4279 21 16 7.4840 8.3014 2.2585 22 6 7.2762 8.9839 3.8696 23 1 6.6771 8.4647 4.6028 24 6 7.8818 10.1895 4.1959 25 7 8.6117 10.8226 3.3020 26 14 7.6621 10.9127 5.9041 27 1 6.8030 10.0135 6.7157 28 1 8.9886 11.0527 6.5568 29 1 7.0196 12.2473 5.7977 30 6 4.7227 4.5280 -1.1495 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.9501 -0.8400 -0.0004 35 1 3.7836 0.9547 2.1456 36 1 3.7873 -0.5847 1.2518 37 1 5.2406 0.4435 1.2606 38 1 5.1480 2.8846 -3.1056 39 1 4.2273 1.4393 -2.5827 40 1 6.9097 2.2565 -1.7401 41 1 5.9901 0.8114 -1.2144 42 1 5.3668 4.5111 1.7793 43 1 5.4708 7.0526 2.6690 44 1 6.9160 6.1755 3.2261 45 1 9.0352 11.6649 3.5302 46 1 5.0912 4.8824 -2.1121 47 1 4.1149 5.2923 -0.6652 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110300654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:36 Heat of formation + Delta-G solvation = -41.354742 kcal Electronic energy + Delta-G solvation = -27942.317325 eV Core-core repulsion = 24059.055655 eV Total energy + Delta-G solvation = -3883.261669 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64316 -39.64204 -38.62130 -34.95493 -34.59685 -33.24260 -32.37642 -30.30359 -29.85553 -29.09241 -27.87593 -27.20289 -25.42792 -24.00454 -22.35699 -21.15792 -20.14987 -19.98870 -19.68671 -17.91126 -17.58271 -17.20889 -16.45228 -16.08369 -16.00129 -15.46591 -14.83370 -14.76890 -14.72783 -14.69050 -14.06813 -13.89771 -13.54796 -13.15813 -13.03130 -12.97458 -12.84864 -12.71860 -12.51267 -12.46607 -12.25195 -11.83592 -11.72894 -11.64205 -11.50188 -11.29635 -11.03093 -10.96384 -10.91998 -10.73940 -10.54662 -10.02499 -9.74260 -9.51534 -9.26584 -9.02804 -8.94920 -8.66363 -8.16334 -6.43433 -6.16816 -3.86321 2.34701 2.71335 3.11523 3.20061 3.25328 3.32077 3.37138 3.52864 3.85990 4.15908 4.23675 4.25665 4.40527 4.53302 4.63103 4.67897 4.80544 4.85821 4.93408 5.01049 5.07268 5.08909 5.10345 5.18404 5.25546 5.28087 5.38494 5.43863 5.47216 5.48335 5.56234 5.63480 5.73291 5.77070 5.95429 5.98160 5.99042 6.03027 6.17447 6.24423 6.34942 6.57887 6.84029 7.09592 7.65323 7.89449 7.92394 8.40917 8.74651 9.28785 10.90690 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018598 B = 0.002271 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.201895 B =12326.587128 C =13131.974742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.740 5.740 3 C 0.517 3.483 4 O -0.515 6.515 5 C 0.042 3.958 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.469 5.469 9 C 0.054 3.946 10 H 0.120 0.880 11 C -0.158 4.158 12 C -0.152 4.152 13 C 0.039 3.961 14 H 0.122 0.878 15 C 0.157 3.843 16 H 0.097 0.903 17 N -0.724 5.724 18 C 0.533 3.467 19 O -0.522 6.522 20 C -0.152 4.152 21 S -0.062 6.062 22 C -0.533 4.533 23 H 0.073 0.927 24 C 0.072 3.928 25 N -0.868 5.868 26 Si 0.918 3.082 27 H -0.272 1.272 28 H -0.280 1.280 29 H -0.280 1.280 30 C -0.125 4.125 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.402 0.598 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.267 0.733 46 H 0.076 0.924 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.417 -29.033 -8.962 32.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.394 5.394 3 C 0.302 3.698 4 O -0.389 6.389 5 C -0.071 4.071 6 H 0.095 0.905 7 C -0.202 4.202 8 N -0.192 5.192 9 C -0.054 4.054 10 H 0.138 0.862 11 C -0.197 4.197 12 C -0.191 4.191 13 C -0.070 4.070 14 H 0.140 0.860 15 C 0.051 3.949 16 H 0.115 0.885 17 N -0.378 5.378 18 C 0.319 3.681 19 O -0.396 6.396 20 C -0.303 4.303 21 S 0.165 5.835 22 C -0.681 4.681 23 H 0.091 0.909 24 C -0.137 4.137 25 N -0.504 5.504 26 Si 0.745 3.255 27 H -0.196 1.196 28 H -0.206 1.206 29 H -0.206 1.206 30 C -0.164 4.164 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.236 0.764 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.029 -27.090 -10.051 31.298 hybrid contribution -0.623 -1.194 1.810 2.256 sum -12.652 -28.284 -8.242 32.062 Atomic orbital electron populations 1.21511 0.79541 1.02073 1.02418 1.45812 1.07727 1.08683 1.77158 1.20531 0.89716 0.83638 0.75883 1.90732 1.69943 1.31027 1.47189 1.21842 0.92002 0.92858 1.00362 0.90450 1.21830 1.02143 0.99265 0.96923 1.67621 1.08718 1.11889 1.30972 1.24527 0.99338 0.94483 0.87093 0.86225 1.23349 0.96761 1.00169 0.99407 1.23237 0.99606 1.00520 0.95743 1.24823 0.88715 0.95904 0.97542 0.86015 1.21908 0.99063 0.88327 0.85652 0.88481 1.45942 1.53621 1.23139 1.15058 1.20301 0.77808 0.80306 0.89685 1.90686 1.41640 1.67400 1.39917 1.23524 1.06071 1.03627 0.97093 1.85360 1.62993 1.15921 1.19234 1.22918 1.37028 1.09721 0.98453 0.90904 1.24994 0.94586 0.95886 0.98213 1.70034 1.30536 1.15976 1.33823 0.86120 0.78054 0.78877 0.82464 1.19620 1.20614 1.20602 1.23105 0.96519 0.96644 1.00135 0.92166 0.92317 0.90771 0.76735 0.90989 0.91877 0.91129 0.90356 0.91866 0.90202 0.91169 0.76365 0.89242 0.89334 0.92308 0.90565 0.90117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 10.70 59.85 0.64 1.12 16 2 N -0.74 -4.35 5.60 -67.08 -0.38 -4.72 16 3 C 0.52 4.80 6.98 -10.98 -0.08 4.72 16 4 O -0.52 -7.13 15.05 5.55 0.08 -7.04 16 5 C 0.04 0.31 1.97 -68.86 -0.14 0.17 16 6 H 0.08 0.47 4.90 -51.93 -0.25 0.22 16 7 C -0.14 -0.80 8.95 37.16 0.33 -0.47 16 8 N -0.47 -4.54 5.04 -199.12 -1.00 -5.55 16 9 C 0.05 0.55 4.31 -62.55 -0.27 0.28 16 10 H 0.12 1.39 7.11 -51.93 -0.37 1.02 16 11 C -0.16 -1.22 5.62 -24.24 -0.14 -1.36 16 12 C -0.15 -1.09 5.62 -24.21 -0.14 -1.23 16 13 C 0.04 0.34 3.78 -62.53 -0.24 0.11 16 14 H 0.12 0.96 6.97 -51.93 -0.36 0.59 16 15 C 0.16 1.92 2.80 -65.45 -0.18 1.73 16 16 H 0.10 1.32 7.23 -51.93 -0.38 0.95 16 17 N -0.72 -10.33 5.07 -51.41 -0.26 -10.59 16 18 C 0.53 10.24 7.85 -10.99 -0.09 10.15 16 19 O -0.52 -11.99 15.51 5.56 0.09 -11.90 16 20 C -0.15 -3.19 6.16 36.00 0.22 -2.97 16 21 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 22 C -0.53 -15.49 9.50 30.94 0.29 -15.20 16 23 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 24 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 25 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 26 Si 0.92 21.82 29.55 -169.99 -5.02 16.80 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 C -0.12 -1.52 6.22 -24.24 -0.15 -1.67 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.07 0.17 8.14 -51.92 -0.42 -0.25 16 34 H 0.40 1.12 8.24 -40.82 -0.34 0.78 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.21 7.56 -51.93 -0.39 -0.18 16 37 H 0.07 0.35 6.57 -51.93 -0.34 0.01 16 38 H 0.08 0.61 7.82 -51.93 -0.41 0.20 16 39 H 0.06 0.43 7.15 -51.93 -0.37 0.06 16 40 H 0.08 0.60 7.82 -51.93 -0.41 0.19 16 41 H 0.07 0.40 7.42 -51.93 -0.39 0.01 16 42 H 0.40 5.01 8.66 -40.82 -0.35 4.66 16 43 H 0.09 1.77 8.14 -51.92 -0.42 1.35 16 44 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.08 0.90 7.82 -51.93 -0.41 0.49 16 47 H 0.08 1.16 7.98 -51.93 -0.41 0.75 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -37.30 385.09 -9.44 -46.74 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.25 Total: 2.85 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: -0.02 Total: -2.61 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.91 Total: -46.70 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.17 Total: -18.95 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -37.30 -9.44 -46.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110300654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.381 kcal (2) G-P(sol) polarization free energy of solvation -37.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds