Wall clock time and date at job start Wed Apr 1 2020 01:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47178 * 2 1 4 4 C 1.34780 * 119.99624 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00280 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99626 * 179.97438 * 4 3 2 7 7 N 1.46909 * 109.46855 * 179.97438 * 6 4 3 8 8 C 1.50646 * 110.99993 * 69.03509 * 7 6 4 9 9 H 1.09000 * 115.87509 * 295.93846 * 8 7 6 10 10 C 1.55840 * 101.03136 * 170.23534 * 8 7 6 11 11 C 1.54835 * 103.51789 * 327.00766 * 10 8 7 12 12 C 1.50655 * 110.99662 * 177.12272 * 7 6 4 13 13 H 1.09005 * 116.47818 * 63.71185 * 12 7 6 14 14 C 1.55842 * 101.03133 * 297.65289 * 12 7 6 15 15 H 1.08995 * 110.61801 * 208.34317 * 14 12 7 16 16 N 1.46503 * 110.60944 * 85.51496 * 14 12 7 17 17 C 1.34779 * 119.99636 * 163.55806 * 16 14 12 18 18 O 1.21279 * 120.00341 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99905 * 179.97438 * 17 16 14 20 20 S 1.80995 * 109.47033 * 179.97438 * 19 17 16 21 21 C 1.76204 * 100.00185 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99495 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00285 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99762 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99918 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47245 * 90.00270 * 25 23 21 27 27 H 1.48500 * 109.47091 * 209.99850 * 25 23 21 28 28 H 1.48501 * 109.47259 * 330.00161 * 25 23 21 29 29 C 1.54837 * 103.65992 * 326.93107 * 14 12 7 30 30 H 1.08996 * 109.47436 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47412 * 300.00547 * 1 2 3 32 32 H 1.08998 * 109.46609 * 60.00102 * 1 2 3 33 33 H 1.08999 * 109.47412 * 239.99453 * 2 1 3 34 34 H 1.09007 * 109.46833 * 120.00084 * 2 1 3 35 35 H 0.96999 * 120.00451 * 359.97438 * 3 2 1 36 36 H 1.09007 * 109.47151 * 60.00566 * 6 4 3 37 37 H 1.08998 * 109.47401 * 299.99970 * 6 4 3 38 38 H 1.09000 * 110.61870 * 208.49765 * 10 8 7 39 39 H 1.09003 * 110.61078 * 85.51023 * 10 8 7 40 40 H 1.08998 * 110.61323 * 241.48643 * 11 10 8 41 41 H 1.08998 * 110.74685 * 118.56885 * 11 10 8 42 42 H 0.96998 * 120.00279 * 343.55735 * 16 14 12 43 43 H 1.09005 * 109.46853 * 60.00191 * 19 17 16 44 44 H 1.08992 * 109.47002 * 300.00394 * 19 17 16 45 45 H 0.96997 * 120.00033 * 180.02562 * 24 23 21 46 46 H 1.09003 * 110.61665 * 118.57994 * 29 14 12 47 47 H 1.08994 * 110.61497 * 241.56989 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6273 0.0005 5 8 4.1316 0.7055 0.0015 6 6 3.8458 3.0481 -0.0001 7 7 5.3149 3.0481 0.0013 8 6 5.8560 2.5438 -1.3111 9 1 5.6261 1.5062 -1.5533 10 6 7.3700 2.8798 -1.1583 11 6 7.3693 4.1778 -0.3141 12 6 5.8549 4.4527 -0.0698 13 1 5.6248 5.1051 0.7726 14 6 5.3002 4.9158 -1.4506 15 1 5.9545 5.6657 -1.8951 16 7 3.9391 5.4391 -1.3104 17 6 3.4003 6.1874 -2.2934 18 8 4.0420 6.4272 -3.2941 19 6 1.9998 6.7253 -2.1494 20 16 1.5673 7.6837 -3.6226 21 6 -0.0693 8.1784 -3.1963 22 1 -0.4971 7.8730 -2.2528 23 6 -0.8089 8.9595 -4.0733 24 7 -2.0312 9.3295 -3.7545 25 14 -0.0691 9.4870 -5.7054 26 1 -0.3797 8.4695 -6.7416 27 1 -0.6432 10.7957 -6.1091 28 1 1.4035 9.6151 -5.5631 29 6 5.3015 3.6201 -2.2984 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.3881 2.1185 -0.0004 36 1 3.4821 3.5625 0.8895 37 1 3.4830 3.5615 -0.8905 38 1 7.8243 3.0564 -2.1332 39 1 7.8893 2.0795 -0.6310 40 1 7.8233 4.9977 -0.8707 41 1 7.8888 4.0236 0.6316 42 1 3.4256 5.2470 -0.5102 43 1 1.9458 7.3672 -1.2701 44 1 1.3018 5.8958 -2.0372 45 1 -2.5483 9.8751 -4.3675 46 1 4.2893 3.3672 -2.6142 47 1 5.9585 3.7268 -3.1614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110305125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:48 Heat of formation + Delta-G solvation = -37.274925 kcal Electronic energy + Delta-G solvation = -28236.962913 eV Core-core repulsion = 24353.878158 eV Total energy + Delta-G solvation = -3883.084755 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73651 -39.54577 -38.80615 -35.50437 -34.32126 -32.71756 -32.49918 -30.80526 -30.36525 -29.82517 -28.03263 -26.48672 -25.66381 -23.11701 -22.49376 -21.15909 -20.91752 -20.15276 -19.78475 -17.97754 -17.17840 -16.93541 -16.56178 -16.54665 -15.99633 -15.76401 -15.13757 -15.06774 -14.87613 -14.74672 -14.17764 -13.84285 -13.69860 -13.42487 -12.98587 -12.87584 -12.85018 -12.69454 -12.55215 -12.30111 -12.15326 -12.06209 -11.86270 -11.71728 -11.55972 -11.39450 -11.32203 -11.06227 -10.97816 -10.74446 -10.50251 -9.98118 -9.90928 -9.59794 -9.33956 -9.14124 -9.05345 -8.81696 -8.57247 -6.98932 -6.34902 -4.07266 2.45037 2.66060 2.78672 2.84270 3.20342 3.28618 3.45597 3.54126 3.60829 4.25807 4.27828 4.33063 4.41597 4.54344 4.65805 4.72961 4.77228 4.80426 4.89308 4.97138 4.98392 5.02796 5.04360 5.10695 5.13469 5.20149 5.30753 5.36176 5.47812 5.51276 5.59174 5.64652 5.73681 5.75425 5.80520 5.88564 5.89988 5.94091 6.00243 6.17421 6.29942 6.42671 6.55880 7.24366 7.42898 7.88025 8.02486 8.34814 8.36354 9.11313 10.74291 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.003182 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.297168 B = 8796.311369 C =10840.610214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.116 3.884 3 N -0.735 5.735 4 C 0.517 3.483 5 O -0.526 6.526 6 C -0.011 4.011 7 N -0.470 5.470 8 C 0.052 3.948 9 H 0.123 0.877 10 C -0.116 4.116 11 C -0.110 4.110 12 C 0.039 3.961 13 H 0.122 0.878 14 C 0.114 3.886 15 H 0.097 0.903 16 N -0.735 5.735 17 C 0.529 3.471 18 O -0.512 6.512 19 C -0.125 4.125 20 S -0.140 6.140 21 C -0.523 4.523 22 H 0.088 0.912 23 C 0.097 3.903 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 C -0.163 4.163 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.402 0.598 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.397 0.603 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.271 0.729 46 H 0.071 0.929 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.621 -15.945 10.697 22.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.007 4.007 3 N -0.389 5.389 4 C 0.303 3.697 5 O -0.401 6.401 6 C -0.143 4.143 7 N -0.192 5.192 8 C -0.057 4.057 9 H 0.141 0.859 10 C -0.154 4.154 11 C -0.148 4.148 12 C -0.069 4.069 13 H 0.140 0.860 14 C 0.008 3.992 15 H 0.115 0.885 16 N -0.391 5.391 17 C 0.315 3.685 18 O -0.386 6.386 19 C -0.276 4.276 20 S 0.087 5.913 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.516 5.516 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 C -0.204 4.204 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.236 0.764 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.234 0.766 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 14.250 -16.467 9.513 23.764 hybrid contribution -1.867 0.838 0.130 2.051 sum 12.383 -15.628 9.644 22.149 Atomic orbital electron populations 1.22020 0.94271 1.03282 1.02877 1.21268 0.94348 0.82868 1.02232 1.46072 1.07190 1.09131 1.76533 1.20463 0.82055 0.91333 0.75833 1.90683 1.55089 1.46134 1.48196 1.22712 0.92047 0.94992 1.04522 1.67621 1.05021 1.13716 1.32873 1.24644 0.94957 0.98949 0.87114 0.85899 1.22617 0.95177 0.97588 0.99988 1.22525 0.93699 0.97836 1.00778 1.24806 0.96318 0.90154 0.95670 0.86037 1.22775 0.83938 0.95930 0.96561 0.88462 1.46464 1.16132 1.54619 1.21919 1.20370 0.88269 0.77122 0.82760 1.90708 1.62317 1.56607 1.28931 1.23296 0.95028 1.03696 1.05593 1.84834 1.19701 1.64577 1.22221 1.22303 0.97275 1.38568 1.08902 0.89394 1.24702 0.94090 0.94210 0.98213 1.69930 1.09167 1.35444 1.37051 0.86747 0.82257 0.79054 0.83866 1.19198 1.19877 1.15936 1.23842 1.02545 0.94651 0.99318 0.90802 0.91853 0.91676 0.91632 0.91609 0.76429 0.87872 0.88900 0.91036 0.90860 0.90773 0.90479 0.76631 0.88420 0.88658 0.91886 0.91046 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.96 10.03 37.16 0.37 -0.59 16 2 C 0.12 0.92 6.39 -4.04 -0.03 0.89 16 3 N -0.74 -6.13 5.56 -60.29 -0.33 -6.46 16 4 C 0.52 5.56 7.62 -10.98 -0.08 5.47 16 5 O -0.53 -7.50 14.79 5.56 0.08 -7.42 16 6 C -0.01 -0.10 4.05 -4.97 -0.02 -0.12 16 7 N -0.47 -4.64 5.31 -206.77 -1.10 -5.73 16 8 C 0.05 0.53 4.26 -62.36 -0.27 0.26 16 9 H 0.12 1.46 6.87 -51.93 -0.36 1.10 16 10 C -0.12 -1.00 6.43 -24.25 -0.16 -1.15 16 11 C -0.11 -0.86 6.43 -24.24 -0.16 -1.02 16 12 C 0.04 0.34 4.63 -62.56 -0.29 0.05 16 13 H 0.12 0.88 8.14 -51.93 -0.42 0.46 16 14 C 0.11 1.22 2.46 -65.44 -0.16 1.05 16 15 H 0.10 1.18 7.49 -51.93 -0.39 0.80 16 16 N -0.73 -8.36 3.75 -51.40 -0.19 -8.56 16 17 C 0.53 8.65 7.81 -10.98 -0.09 8.56 16 18 O -0.51 -10.43 15.66 5.56 0.09 -10.34 16 19 C -0.13 -2.25 6.16 36.01 0.22 -2.03 16 20 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 21 C -0.52 -14.61 10.04 30.94 0.31 -14.30 16 22 H 0.09 2.55 8.03 -52.49 -0.42 2.13 16 23 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 24 N -0.88 -25.99 13.97 55.49 0.78 -25.21 16 25 Si 0.86 21.35 27.74 -169.99 -4.71 16.64 16 26 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.24 -5.87 6.74 56.52 0.38 -5.48 16 29 C -0.16 -1.80 5.48 -24.03 -0.13 -1.93 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.40 2.49 8.47 -40.82 -0.35 2.15 16 36 H 0.10 0.70 8.03 -51.92 -0.42 0.28 16 37 H 0.09 0.85 3.55 -51.93 -0.18 0.67 16 38 H 0.07 0.56 7.82 -51.93 -0.41 0.16 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.40 3.45 6.48 -40.82 -0.26 3.18 16 43 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 44 H 0.10 1.55 8.14 -51.92 -0.42 1.13 16 45 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 46 H 0.07 0.89 7.09 -51.93 -0.37 0.52 16 47 H 0.08 0.93 7.82 -51.93 -0.41 0.52 16 LS Contribution 382.76 15.07 5.77 5.77 Total: -1.00 -35.21 382.76 -9.54 -44.74 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -7.35 Total: 4.15 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -0.57 Total: -2.17 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.85 Total: -45.96 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.17 Total: -17.76 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.21 -9.54 -44.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110305125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.469 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds