Wall clock time and date at job start Wed Apr 1 2020 01:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47178 * 2 1 4 4 C 1.34780 * 119.99624 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00280 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99626 * 179.97438 * 4 3 2 7 7 N 1.46909 * 109.46855 * 179.97438 * 6 4 3 8 8 C 1.50646 * 110.99993 * 69.03509 * 7 6 4 9 9 H 1.09000 * 115.87509 * 295.93846 * 8 7 6 10 10 C 1.55840 * 101.03136 * 170.23534 * 8 7 6 11 11 C 1.54835 * 103.51789 * 327.00766 * 10 8 7 12 12 C 1.50655 * 110.99662 * 177.12272 * 7 6 4 13 13 H 1.09005 * 116.47818 * 63.71185 * 12 7 6 14 14 C 1.55842 * 101.03133 * 297.65289 * 12 7 6 15 15 H 1.08995 * 110.61801 * 208.34317 * 14 12 7 16 16 N 1.46503 * 110.60944 * 85.51496 * 14 12 7 17 17 C 1.34779 * 119.99636 * 163.55806 * 16 14 12 18 18 O 1.21279 * 120.00341 * 0.02562 * 17 16 14 19 19 C 1.50705 * 119.99905 * 179.97438 * 17 16 14 20 20 S 1.80995 * 109.47033 * 179.97438 * 19 17 16 21 21 C 1.76204 * 100.00185 * 180.02562 * 20 19 17 22 22 H 1.08000 * 119.99495 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00285 * 180.02562 * 21 20 19 24 24 N 1.31626 * 119.99762 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99918 * 359.97438 * 23 21 20 26 26 H 1.48505 * 109.47245 * 90.00270 * 25 23 21 27 27 H 1.48500 * 109.47091 * 209.99850 * 25 23 21 28 28 H 1.48501 * 109.47259 * 330.00161 * 25 23 21 29 29 C 1.54837 * 103.65992 * 326.93107 * 14 12 7 30 30 H 1.08996 * 109.47436 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47412 * 300.00547 * 1 2 3 32 32 H 1.08998 * 109.46609 * 60.00102 * 1 2 3 33 33 H 1.08999 * 109.47412 * 239.99453 * 2 1 3 34 34 H 1.09007 * 109.46833 * 120.00084 * 2 1 3 35 35 H 0.96999 * 120.00451 * 359.97438 * 3 2 1 36 36 H 1.09007 * 109.47151 * 60.00566 * 6 4 3 37 37 H 1.08998 * 109.47401 * 299.99970 * 6 4 3 38 38 H 1.09000 * 110.61870 * 208.49765 * 10 8 7 39 39 H 1.09003 * 110.61078 * 85.51023 * 10 8 7 40 40 H 1.08998 * 110.61323 * 241.48643 * 11 10 8 41 41 H 1.08998 * 110.74685 * 118.56885 * 11 10 8 42 42 H 0.96998 * 120.00279 * 343.55735 * 16 14 12 43 43 H 1.09005 * 109.46853 * 60.00191 * 19 17 16 44 44 H 1.08992 * 109.47002 * 300.00394 * 19 17 16 45 45 H 0.96997 * 120.00033 * 180.02562 * 24 23 21 46 46 H 1.09003 * 110.61665 * 118.57994 * 29 14 12 47 47 H 1.08994 * 110.61497 * 241.56989 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6273 0.0005 5 8 4.1316 0.7055 0.0015 6 6 3.8458 3.0481 -0.0001 7 7 5.3149 3.0481 0.0013 8 6 5.8560 2.5438 -1.3111 9 1 5.6261 1.5062 -1.5533 10 6 7.3700 2.8798 -1.1583 11 6 7.3693 4.1778 -0.3141 12 6 5.8549 4.4527 -0.0698 13 1 5.6248 5.1051 0.7726 14 6 5.3002 4.9158 -1.4506 15 1 5.9545 5.6657 -1.8951 16 7 3.9391 5.4391 -1.3104 17 6 3.4003 6.1874 -2.2934 18 8 4.0420 6.4272 -3.2941 19 6 1.9998 6.7253 -2.1494 20 16 1.5673 7.6837 -3.6226 21 6 -0.0693 8.1784 -3.1963 22 1 -0.4971 7.8730 -2.2528 23 6 -0.8089 8.9595 -4.0733 24 7 -2.0312 9.3295 -3.7545 25 14 -0.0691 9.4870 -5.7054 26 1 -0.3797 8.4695 -6.7416 27 1 -0.6432 10.7957 -6.1091 28 1 1.4035 9.6151 -5.5631 29 6 5.3015 3.6201 -2.2984 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.3881 2.1185 -0.0004 36 1 3.4821 3.5625 0.8895 37 1 3.4830 3.5615 -0.8905 38 1 7.8243 3.0564 -2.1332 39 1 7.8893 2.0795 -0.6310 40 1 7.8233 4.9977 -0.8707 41 1 7.8888 4.0236 0.6316 42 1 3.4256 5.2470 -0.5102 43 1 1.9458 7.3672 -1.2701 44 1 1.3018 5.8958 -2.0372 45 1 -2.5483 9.8751 -4.3675 46 1 4.2893 3.3672 -2.6142 47 1 5.9585 3.7268 -3.1614 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110305125.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:11:47 Heat of formation + Delta-G solvation = -64.372801 kcal Electronic energy + Delta-G solvation = -28238.137965 eV Core-core repulsion = 24353.878158 eV Total energy + Delta-G solvation = -3884.259807 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58206 -40.49672 -39.94871 -36.26674 -35.43409 -34.66598 -33.48579 -31.62781 -31.40923 -30.66098 -29.06070 -27.83603 -27.22433 -23.74374 -23.41607 -22.00809 -21.85209 -21.09729 -20.62334 -19.82671 -18.23649 -17.85224 -17.63493 -17.40698 -17.09362 -16.89529 -16.59122 -16.25428 -15.96512 -15.79767 -15.40126 -14.97918 -14.79821 -14.63217 -14.54276 -13.89616 -13.79408 -13.41481 -13.34588 -13.33793 -13.11386 -13.02472 -12.93459 -12.71448 -12.70126 -12.64768 -12.36362 -12.35760 -12.11225 -11.88058 -11.75677 -11.36858 -11.17122 -10.90170 -10.84132 -10.52142 -10.19936 -10.10338 -9.62249 -8.98951 -8.51413 -6.21610 0.98695 1.30858 1.46349 1.51770 1.54762 1.64313 2.07924 2.15607 2.24829 2.71405 2.83997 2.87388 3.49556 3.57739 3.66832 3.77252 3.86937 4.00608 4.12017 4.14643 4.18614 4.21621 4.24132 4.30334 4.36100 4.46296 4.47500 4.48054 4.49272 4.65388 4.71539 4.91242 4.92837 5.03012 5.05973 5.13070 5.23186 5.24596 5.26274 5.41251 5.47426 5.60132 5.71179 5.80427 6.12244 6.36653 6.55234 6.94496 7.14321 7.25833 8.60794 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010712 B = 0.003182 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.297168 B = 8796.311369 C =10840.610214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.114 3.886 3 N -0.726 5.726 4 C 0.512 3.488 5 O -0.567 6.567 6 C -0.009 4.009 7 N -0.478 5.478 8 C 0.053 3.947 9 H 0.103 0.897 10 C -0.114 4.114 11 C -0.107 4.107 12 C 0.051 3.949 13 H 0.146 0.854 14 C 0.115 3.885 15 H 0.087 0.913 16 N -0.708 5.708 17 C 0.535 3.465 18 O -0.556 6.556 19 C -0.112 4.112 20 S -0.178 6.178 21 C -0.526 4.526 22 H 0.065 0.935 23 C 0.048 3.952 24 N -0.916 5.916 25 Si 0.911 3.089 26 H -0.264 1.264 27 H -0.261 1.261 28 H -0.237 1.237 29 C -0.159 4.159 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.413 0.587 36 H 0.133 0.867 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.415 0.585 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.276 0.724 46 H 0.054 0.946 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.462 -15.894 11.931 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.009 4.009 3 N -0.380 5.380 4 C 0.299 3.701 5 O -0.446 6.446 6 C -0.141 4.141 7 N -0.200 5.200 8 C -0.056 4.056 9 H 0.121 0.879 10 C -0.152 4.152 11 C -0.145 4.145 12 C -0.057 4.057 13 H 0.163 0.837 14 C 0.009 3.991 15 H 0.105 0.895 16 N -0.364 5.364 17 C 0.321 3.679 18 O -0.433 6.433 19 C -0.263 4.263 20 S 0.049 5.951 21 C -0.674 4.674 22 H 0.084 0.916 23 C -0.158 4.158 24 N -0.554 5.554 25 Si 0.733 3.267 26 H -0.189 1.189 27 H -0.185 1.185 28 H -0.161 1.161 29 C -0.199 4.199 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.250 0.750 36 H 0.151 0.849 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.254 0.746 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.086 0.914 46 H 0.073 0.927 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 15.059 -16.426 10.798 24.762 hybrid contribution -2.113 0.676 -0.132 2.222 sum 12.946 -15.750 10.666 23.009 Atomic orbital electron populations 1.21968 0.92356 1.04106 1.03169 1.21305 0.95830 0.82508 1.01284 1.46061 1.06829 1.09826 1.75247 1.20843 0.82407 0.91713 0.75179 1.90668 1.56200 1.47391 1.50308 1.22771 0.91648 0.93996 1.05635 1.67626 1.05604 1.14451 1.32339 1.24500 0.96241 0.97627 0.87217 0.87937 1.22620 0.93831 0.98190 1.00589 1.22558 0.93277 0.97430 1.01269 1.24929 0.96526 0.89430 0.94831 0.83667 1.22874 0.82914 0.95179 0.98120 0.89487 1.46200 1.16510 1.52545 1.21184 1.20051 0.87387 0.77402 0.83053 1.90703 1.63077 1.58657 1.30885 1.23290 0.96664 1.03738 1.02601 1.84797 1.17400 1.66243 1.26695 1.22458 0.98966 1.38056 1.07929 0.91646 1.25506 0.94489 0.94459 1.01328 1.70006 1.10403 1.36544 1.38496 0.85918 0.81410 0.79216 0.80150 1.18870 1.18518 1.16090 1.23757 1.01432 0.95259 0.99454 0.89796 0.90990 0.91819 0.93001 0.92224 0.75019 0.84947 0.89164 0.90529 0.90940 0.89905 0.89308 0.74583 0.86535 0.86588 0.91417 0.92750 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 10.03 71.98 0.72 -0.88 16 2 C 0.11 1.74 6.39 86.38 0.55 2.29 16 3 N -0.73 -11.21 5.56 -463.06 -2.57 -13.78 16 4 C 0.51 10.48 7.62 87.66 0.67 11.15 16 5 O -0.57 -16.20 14.79 -3.03 -0.04 -16.24 16 6 C -0.01 -0.14 4.05 85.55 0.35 0.21 16 7 N -0.48 -8.42 5.31 -808.08 -4.29 -12.72 16 8 C 0.05 1.04 4.26 46.28 0.20 1.24 16 9 H 0.10 2.50 6.87 -2.39 -0.02 2.48 16 10 C -0.11 -1.80 6.43 32.20 0.21 -1.60 16 11 C -0.11 -1.38 6.43 32.21 0.21 -1.18 16 12 C 0.05 0.72 4.63 46.14 0.21 0.93 16 13 H 0.15 1.42 8.14 -2.38 -0.02 1.40 16 14 C 0.12 2.20 2.46 46.60 0.11 2.32 16 15 H 0.09 1.95 7.49 -2.39 -0.02 1.93 16 16 N -0.71 -14.25 3.75 -434.94 -1.63 -15.88 16 17 C 0.54 16.50 7.81 87.66 0.68 17.18 16 18 O -0.56 -22.13 15.66 -3.02 -0.05 -22.18 16 19 C -0.11 -3.80 6.16 71.24 0.44 -3.36 16 20 S -0.18 -8.56 18.55 -56.49 -1.05 -9.61 16 21 C -0.53 -29.43 10.04 67.95 0.68 -28.75 16 22 H 0.07 3.83 8.03 -2.91 -0.02 3.80 16 23 C 0.05 2.72 5.50 84.86 0.47 3.19 16 24 N -0.92 -54.44 13.97 21.65 0.30 -54.14 16 25 Si 0.91 43.97 27.74 68.60 1.90 45.87 16 26 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 27 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 28 H -0.24 -11.42 6.74 99.48 0.67 -10.75 16 29 C -0.16 -3.38 5.48 32.34 0.18 -3.20 16 30 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 35 H 0.41 4.30 8.47 -92.71 -0.79 3.51 16 36 H 0.13 1.28 8.03 -2.38 -0.02 1.26 16 37 H 0.09 1.45 3.55 -2.39 -0.01 1.44 16 38 H 0.08 1.12 7.82 -2.39 -0.02 1.10 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.08 0.97 7.82 -2.39 -0.02 0.95 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.41 5.65 6.48 -92.71 -0.60 5.05 16 43 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 44 H 0.12 3.49 8.14 -2.40 -0.02 3.47 16 45 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 46 H 0.05 1.34 7.09 -2.39 -0.02 1.32 16 47 H 0.08 1.71 7.82 -2.39 -0.02 1.69 16 Total: -1.00 -77.31 382.76 -2.18 -79.49 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.43 Total: 19.64 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.68 Total: -0.45 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -8.20 Total: -96.52 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -0.09 Total: -38.42 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.90 Total: 45.87 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.05 Total: -9.61 kcal Total: -77.31 -2.18 -79.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110305125.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.115 kcal (2) G-P(sol) polarization free energy of solvation -77.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds