Wall clock time and date at job start Wed Apr 1 2020 00:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81397 * 103.00002 * 2 1 4 4 H 1.08995 * 109.47244 * 54.99661 * 3 2 1 5 5 C 1.53004 * 109.47029 * 294.99717 * 3 2 1 6 6 C 1.50702 * 109.47280 * 175.00171 * 3 2 1 7 7 O 1.21275 * 120.00030 * 24.99916 * 6 3 2 8 8 N 1.34778 * 119.99659 * 204.99979 * 6 3 2 9 9 C 1.46498 * 119.99590 * 180.02562 * 8 6 3 10 10 H 1.08995 * 110.55229 * 32.13012 * 9 8 6 11 11 C 1.54839 * 110.61525 * 269.09544 * 9 8 6 12 12 C 1.55844 * 103.52021 * 241.49688 * 11 9 8 13 13 H 1.09004 * 116.15039 * 159.22777 * 12 11 9 14 14 C 1.55844 * 105.02984 * 288.26629 * 12 11 9 15 15 C 1.54834 * 103.52072 * 71.73084 * 14 12 11 16 16 C 1.55849 * 103.51619 * 0.02562 * 15 14 12 17 17 H 1.09005 * 115.58010 * 158.88984 * 16 15 14 18 18 N 1.50646 * 101.02902 * 32.99133 * 16 15 14 19 19 C 1.46900 * 111.00113 * 62.35018 * 18 16 15 20 20 C 1.50698 * 109.47020 * 67.88677 * 19 18 16 21 21 O 1.21296 * 120.00508 * 5.81380 * 20 19 18 22 22 N 1.34778 * 120.00305 * 185.81036 * 20 19 18 23 23 C 1.37097 * 120.00372 * 180.02562 * 22 20 19 24 24 H 1.07992 * 119.99987 * 0.27751 * 23 22 20 25 25 C 1.38958 * 119.99948 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00036 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99808 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.47441 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47198 * 120.00470 * 27 25 23 30 30 H 1.48496 * 109.47043 * 239.99996 * 27 25 23 31 31 H 1.08993 * 109.47366 * 60.00320 * 1 2 3 32 32 H 1.09007 * 109.46903 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47284 * 299.99917 * 1 2 3 34 34 H 1.08996 * 109.47575 * 300.00166 * 5 3 2 35 35 H 1.09007 * 109.46444 * 60.00041 * 5 3 2 36 36 H 1.08997 * 109.47262 * 179.97438 * 5 3 2 37 37 H 0.96998 * 120.00599 * 359.97438 * 8 6 3 38 38 H 1.08997 * 110.61244 * 122.97939 * 11 9 8 39 39 H 1.09004 * 110.60648 * 0.02562 * 11 9 8 40 40 H 1.09009 * 110.61359 * 190.24003 * 14 12 11 41 41 H 1.08994 * 110.61669 * 313.22008 * 14 12 11 42 42 H 1.09005 * 110.61135 * 118.50402 * 15 14 12 43 43 H 1.08997 * 110.61481 * 241.33314 * 15 14 12 44 44 H 1.08996 * 109.47000 * 307.88989 * 19 18 16 45 45 H 1.08997 * 109.47558 * 187.88888 * 19 18 16 46 46 H 0.97004 * 119.99432 * 359.97438 * 22 20 19 47 47 H 0.97001 * 120.00327 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 0.8417 5 6 1.7428 2.4015 -1.3074 6 6 3.7142 1.9386 0.1238 7 8 4.4584 1.0532 -0.2409 8 7 4.2215 3.0756 0.6398 9 6 5.6721 3.2421 0.7596 10 1 6.1852 2.7188 -0.0470 11 6 6.1661 2.7421 2.1393 12 6 6.7788 4.0181 2.7913 13 1 6.8729 4.0049 3.8772 14 6 8.0986 4.2799 2.0048 15 6 7.6047 4.7799 0.6252 16 6 6.0525 4.7541 0.7627 17 1 5.5074 5.3881 0.0633 18 7 5.8868 5.0906 2.2217 19 6 6.4168 6.4285 2.5169 20 6 5.5548 7.4688 1.8494 21 8 4.5354 7.1383 1.2812 22 7 5.9164 8.7668 1.8837 23 6 5.1319 9.7133 1.2769 24 1 4.2218 9.4195 0.7752 25 6 5.5045 11.0515 1.3128 26 7 6.6091 11.4097 1.9279 27 14 4.4352 12.3412 0.4866 28 1 3.2553 11.6843 -0.1311 29 1 3.9788 13.3278 1.4983 30 1 5.2213 13.0370 -0.5637 31 1 -0.3634 0.5137 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8899 34 1 2.2353 1.9149 -2.1492 35 1 0.6635 2.2777 -1.3969 36 1 1.9876 3.4637 -1.3073 37 1 3.6263 3.7839 0.9312 38 1 6.9261 1.9703 2.0180 39 1 5.3317 2.3699 2.7338 40 1 8.6948 5.0464 2.4999 41 1 8.6702 3.3581 1.8967 42 1 7.9560 5.7944 0.4364 43 1 7.9338 4.1075 -0.1671 44 1 7.4369 6.5063 2.1409 45 1 6.4135 6.5910 3.5947 46 1 6.7314 9.0312 2.3384 47 1 6.8695 12.3437 1.9527 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110313412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:49 Heat of formation + Delta-G solvation = -67.527694 kcal Electronic energy + Delta-G solvation = -28280.091103 eV Core-core repulsion = 24395.694489 eV Total energy + Delta-G solvation = -3884.396614 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.21883 -40.54173 -39.59300 -35.95578 -35.55969 -34.33198 -33.26846 -32.37115 -30.84583 -29.98853 -29.54397 -28.07526 -26.06631 -25.61693 -23.10394 -21.84936 -21.37640 -20.71540 -20.55832 -19.76376 -18.46730 -17.98286 -17.73081 -17.16494 -16.88814 -16.57141 -16.25999 -15.99259 -15.62448 -15.51289 -15.25706 -15.06899 -14.83221 -14.39847 -14.31403 -13.87341 -13.68320 -13.58810 -13.42182 -13.27201 -13.16410 -12.99002 -12.93321 -12.73923 -12.66836 -12.55116 -12.38112 -12.23808 -12.12524 -12.09808 -11.77226 -11.46688 -11.37698 -10.87768 -10.83534 -10.28029 -10.10994 -9.97801 -9.46682 -8.72214 -8.45331 -5.93108 0.45126 1.36451 1.41866 1.48991 1.55217 1.64747 2.09076 2.15954 2.28725 2.76925 3.22262 3.29872 3.38680 3.61139 3.72406 3.80780 3.89019 3.98514 4.08109 4.22712 4.28704 4.29751 4.34027 4.36944 4.38311 4.41939 4.49355 4.57082 4.59735 4.65080 4.71518 4.78946 4.90987 4.97360 5.04060 5.07672 5.09924 5.19844 5.27703 5.42530 5.46893 5.69271 5.87011 6.09188 6.46932 6.62491 7.12205 7.15235 7.59748 8.14814 8.72447 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012613 B = 0.002807 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.458802 B = 9973.616571 C =11693.751084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.255 6.255 3 C -0.081 4.081 4 H 0.124 0.876 5 C -0.138 4.138 6 C 0.532 3.468 7 O -0.565 6.565 8 N -0.701 5.701 9 C 0.156 3.844 10 H 0.087 0.913 11 C -0.113 4.113 12 C 0.048 3.952 13 H 0.135 0.865 14 C -0.147 4.147 15 C -0.153 4.153 16 C 0.046 3.954 17 H 0.094 0.906 18 N -0.483 5.483 19 C 0.036 3.964 20 C 0.445 3.555 21 O -0.612 6.612 22 N -0.577 5.577 23 C -0.326 4.326 24 H 0.080 0.920 25 C -0.015 4.015 26 N -0.922 5.922 27 Si 0.990 3.010 28 H -0.272 1.272 29 H -0.273 1.273 30 H -0.273 1.273 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.412 0.588 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.106 0.894 46 H 0.394 0.606 47 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -18.060 0.153 18.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.030 6.030 3 C -0.213 4.213 4 H 0.142 0.858 5 C -0.197 4.197 6 C 0.317 3.683 7 O -0.444 6.444 8 N -0.351 5.351 9 C 0.050 3.950 10 H 0.105 0.895 11 C -0.152 4.152 12 C -0.060 4.060 13 H 0.153 0.847 14 C -0.185 4.185 15 C -0.193 4.193 16 C -0.063 4.063 17 H 0.112 0.888 18 N -0.206 5.206 19 C -0.095 4.095 20 C 0.233 3.767 21 O -0.498 6.498 22 N -0.215 5.215 23 C -0.456 4.456 24 H 0.098 0.902 25 C -0.214 4.214 26 N -0.564 5.564 27 Si 0.814 3.186 28 H -0.197 1.197 29 H -0.198 1.198 30 H -0.199 1.199 31 H 0.109 0.891 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.092 0.908 37 H 0.248 0.752 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.228 0.772 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.631 -19.564 -0.213 19.899 hybrid contribution -0.191 2.650 -0.326 2.677 sum -3.822 -16.914 -0.538 17.349 Atomic orbital electron populations 1.23590 0.91456 1.07775 1.06217 1.87516 1.09636 1.07812 1.98066 1.23278 0.95574 0.97515 1.04935 0.85799 1.21978 1.03087 1.01076 0.93572 1.20059 0.89764 0.81927 0.76502 1.90691 1.61325 1.42037 1.50315 1.45934 1.08350 1.18291 1.62541 1.22058 0.80248 0.94253 0.98445 0.89478 1.22990 1.00966 0.96621 0.94619 1.24671 0.90290 0.90896 1.00121 0.84687 1.23288 0.98177 1.02717 0.94343 1.23232 0.94897 1.01710 0.99413 1.24557 0.95512 0.94631 0.91574 0.88836 1.67474 1.45985 1.00331 1.06849 1.21998 0.96834 0.89070 1.01635 1.20703 0.87934 0.83510 0.84580 1.90458 1.28706 1.81258 1.49363 1.41957 1.24140 1.05584 1.49776 1.19660 1.05988 0.87622 1.32322 0.90229 1.25998 0.98016 0.99503 0.97886 1.69677 1.23999 1.19052 1.43643 0.84913 0.78023 0.77649 0.78037 1.19661 1.19813 1.19856 0.89063 0.86627 0.89309 0.91840 0.89038 0.90813 0.75225 0.89233 0.91148 0.90490 0.88876 0.92205 0.89741 0.90617 0.87551 0.77224 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.49 10.45 113.37 1.18 -0.31 16 2 S -0.26 -5.65 21.10 -56.49 -1.19 -6.84 16 3 C -0.08 -1.71 3.18 29.85 0.09 -1.62 16 4 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 5 C -0.14 -2.48 9.08 71.98 0.65 -1.83 16 6 C 0.53 14.44 6.95 87.66 0.61 15.05 16 7 O -0.56 -19.19 15.78 -3.02 -0.05 -19.24 16 8 N -0.70 -18.22 5.07 -434.83 -2.21 -20.43 16 9 C 0.16 4.03 2.80 46.63 0.13 4.16 16 10 H 0.09 2.39 7.23 -2.39 -0.02 2.37 16 11 C -0.11 -2.48 6.22 32.21 0.20 -2.28 16 12 C 0.05 1.02 4.96 46.14 0.23 1.25 16 13 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 14 C -0.15 -2.83 5.63 32.20 0.18 -2.65 16 15 C -0.15 -3.72 5.62 32.21 0.18 -3.54 16 16 C 0.05 1.36 3.83 46.17 0.18 1.53 16 17 H 0.09 3.44 6.98 -2.38 -0.02 3.42 16 18 N -0.48 -14.09 5.30 -808.66 -4.28 -18.37 16 19 C 0.04 1.17 5.15 85.56 0.44 1.61 16 20 C 0.45 20.04 7.47 87.66 0.66 20.70 16 21 O -0.61 -31.42 14.56 -3.08 -0.04 -31.46 16 22 N -0.58 -28.61 5.29 -306.98 -1.62 -30.23 16 23 C -0.33 -18.00 9.68 84.04 0.81 -17.19 16 24 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 26 N -0.92 -49.11 13.05 21.67 0.28 -48.83 16 27 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 28 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 29 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 30 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 31 H 0.09 0.90 7.14 -2.39 -0.02 0.88 16 32 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.20 6.92 -2.38 -0.02 1.19 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.41 10.75 8.66 -92.71 -0.80 9.95 16 38 H 0.09 1.73 7.82 -2.39 -0.02 1.71 16 39 H 0.07 1.64 7.98 -2.38 -0.02 1.62 16 40 H 0.08 1.42 7.32 -2.38 -0.02 1.40 16 41 H 0.09 1.46 7.82 -2.39 -0.02 1.44 16 42 H 0.06 1.63 7.23 -2.38 -0.02 1.61 16 43 H 0.08 1.83 7.83 -2.39 -0.02 1.82 16 44 H 0.08 2.22 4.86 -2.39 -0.01 2.21 16 45 H 0.11 3.10 8.14 -2.39 -0.02 3.09 16 46 H 0.39 18.76 7.90 -92.71 -0.73 18.03 16 47 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -69.44 385.69 -1.60 -71.03 By element: Atomic # 1 Polarization: 46.05 SS G_CDS: -0.53 Total: 45.52 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 6.02 Total: 14.59 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -7.83 Total: -117.86 kcal Atomic # 8 Polarization: -50.61 SS G_CDS: -0.09 Total: -50.71 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Atomic # 16 Polarization: -5.65 SS G_CDS: -1.19 Total: -6.84 kcal Total: -69.44 -1.60 -71.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110313412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.506 kcal (2) G-P(sol) polarization free energy of solvation -69.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds