Wall clock time and date at job start Wed Apr 1 2020 00:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09008 * 109.47098 * 2 1 4 4 C 1.50700 * 109.47383 * 120.00483 * 2 1 3 5 5 N 1.34777 * 119.99908 * 273.28163 * 4 2 1 6 6 O 1.21276 * 120.00207 * 93.28371 * 4 2 1 7 7 N 1.46904 * 109.46823 * 240.00529 * 2 1 3 8 8 C 1.48534 * 110.99996 * 174.39468 * 7 2 1 9 9 C 1.54323 * 104.67263 * 200.80550 * 8 7 2 10 10 H 1.08994 * 112.55106 * 262.01796 * 9 8 7 11 11 C 1.54159 * 108.86564 * 137.48816 * 9 8 7 12 12 C 1.54851 * 104.32233 * 223.67368 * 11 9 8 13 13 C 1.54842 * 102.73389 * 38.18635 * 12 11 9 14 14 C 1.54165 * 104.32563 * 321.81449 * 13 12 11 15 15 N 1.46501 * 112.51286 * 260.86181 * 14 13 12 16 16 C 1.34773 * 119.99761 * 298.12407 * 15 14 13 17 17 O 1.21279 * 120.00138 * 359.97438 * 16 15 14 18 18 C 1.50700 * 120.00097 * 179.97438 * 16 15 14 19 19 S 1.81000 * 109.47454 * 179.97438 * 18 16 15 20 20 C 1.76197 * 100.00014 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00071 * 0.02562 * 20 19 18 22 22 C 1.38803 * 119.99889 * 180.02562 * 20 19 18 23 23 N 1.31629 * 120.00094 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00035 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47221 * 0.02562 * 24 22 20 26 26 H 1.48497 * 109.47514 * 120.00147 * 24 22 20 27 27 H 1.48502 * 109.47002 * 240.00333 * 24 22 20 28 28 C 1.48530 * 111.00047 * 58.98510 * 7 2 1 29 29 H 1.08998 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46844 * 299.99712 * 1 2 3 31 31 H 1.08996 * 109.47449 * 59.99291 * 1 2 3 32 32 H 0.97000 * 119.99606 * 0.02562 * 5 4 2 33 33 H 0.96994 * 120.00151 * 179.97438 * 5 4 2 34 34 H 1.09004 * 110.39206 * 319.59891 * 8 7 2 35 35 H 1.08991 * 110.39880 * 82.00167 * 8 7 2 36 36 H 1.08997 * 110.46368 * 342.38442 * 11 9 8 37 37 H 1.09000 * 110.46217 * 104.96651 * 11 9 8 38 38 H 1.08997 * 110.75747 * 156.49327 * 12 11 9 39 39 H 1.08996 * 110.75836 * 279.69016 * 12 11 9 40 40 H 1.09003 * 110.46263 * 203.10545 * 13 12 11 41 41 H 1.09000 * 110.46514 * 80.52683 * 13 12 11 42 42 H 0.96999 * 119.99663 * 118.12426 * 15 14 13 43 43 H 1.08994 * 109.47199 * 300.00406 * 18 16 15 44 44 H 1.09000 * 109.46888 * 59.99858 * 18 16 15 45 45 H 0.96995 * 119.99978 * 179.97438 * 23 22 20 46 46 H 1.08994 * 110.39800 * 277.98915 * 28 7 2 47 47 H 1.09003 * 110.39624 * 40.28536 * 28 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 2.1941 -0.0302 2.3826 6 8 2.2913 -1.8944 1.1838 7 7 2.0196 -0.6924 -1.1996 8 6 3.4982 -0.5961 -1.3036 9 6 3.8034 -0.8616 -2.7928 10 1 4.0996 -1.8935 -2.9813 11 6 4.8767 0.1379 -3.2676 12 6 4.3690 0.6175 -4.6496 13 6 2.8389 0.7188 -4.4348 14 6 2.4985 -0.4897 -3.5401 15 7 1.9651 -1.6204 -4.3038 16 6 0.8139 -1.4859 -4.9915 17 8 0.2192 -0.4290 -4.9777 18 6 0.2655 -2.6488 -5.7776 19 16 -1.2792 -2.1578 -6.5832 20 6 -1.6868 -3.6617 -7.4057 21 1 -1.0396 -4.5212 -7.3118 22 6 -2.8397 -3.7419 -8.1745 23 7 -3.6283 -2.6942 -8.2895 24 14 -3.2723 -5.3365 -9.0459 25 1 -2.2316 -6.3559 -8.7581 26 1 -4.5890 -5.8237 -8.5621 27 1 -3.3404 -5.0977 -10.5100 28 6 1.5234 -0.0331 -2.4345 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.9867 0.9166 2.4199 33 1 2.5171 -0.4876 3.1746 34 1 3.8348 0.4008 -1.0187 35 1 3.9731 -1.3516 -0.6778 36 1 4.9485 0.9772 -2.5758 37 1 5.8420 -0.3584 -3.3676 38 1 4.7894 1.5918 -4.8989 39 1 4.6058 -0.1131 -5.4230 40 1 2.3146 0.6471 -5.3878 41 1 2.5860 1.6506 -3.9289 42 1 2.4406 -2.4658 -4.3145 43 1 0.9902 -2.9502 -6.5338 44 1 0.0740 -3.4844 -5.1044 45 1 -4.4337 -2.7501 -8.8270 46 1 0.5101 -0.3645 -2.6612 47 1 1.5521 1.0509 -2.3242 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111600315.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:46 Heat of formation + Delta-G solvation = -69.281812 kcal Electronic energy + Delta-G solvation = -28377.842842 eV Core-core repulsion = 24493.370164 eV Total energy + Delta-G solvation = -3884.472678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06148 -39.68548 -38.22614 -35.98522 -33.97973 -33.47025 -32.39411 -31.83349 -30.45862 -28.86805 -27.39625 -25.95266 -25.43188 -24.27079 -22.29624 -21.39548 -20.08406 -19.86189 -19.22688 -17.82566 -17.63893 -17.30722 -16.81436 -16.00323 -15.72197 -15.30738 -15.06594 -14.89050 -14.77245 -14.41780 -14.16436 -14.04785 -13.67915 -13.56953 -13.03137 -12.71825 -12.61979 -12.54199 -12.38131 -12.14421 -11.92641 -11.71947 -11.58035 -11.28063 -11.19433 -11.04521 -10.97740 -10.96033 -10.85320 -10.73987 -10.70407 -10.01975 -9.98445 -9.76417 -9.23387 -9.04260 -8.76721 -8.61426 -8.18957 -6.45259 -6.18752 -3.88148 2.37962 3.04594 3.08493 3.16375 3.24110 3.30957 3.36229 3.73612 3.76690 4.10379 4.23984 4.30251 4.52077 4.55489 4.75947 4.80749 4.93963 5.04448 5.11935 5.14259 5.16680 5.24226 5.28487 5.33549 5.40584 5.51905 5.55431 5.58191 5.64352 5.69716 5.80160 5.84665 5.91103 5.96309 5.97851 6.08562 6.14897 6.17940 6.22985 6.42871 6.57801 6.66623 6.85856 7.04653 7.63609 7.82465 8.01222 8.39066 8.69953 9.27123 10.88730 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.002759 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.352715 B =10147.296930 C =11238.609910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 H 0.060 0.940 4 C 0.521 3.479 5 N -0.860 5.860 6 O -0.518 6.518 7 N -0.486 5.486 8 C 0.037 3.963 9 C -0.094 4.094 10 H 0.094 0.906 11 C -0.118 4.118 12 C -0.124 4.124 13 C -0.124 4.124 14 C 0.181 3.819 15 N -0.717 5.717 16 C 0.536 3.464 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.059 6.059 20 C -0.533 4.533 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 C 0.033 3.967 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.399 0.601 33 H 0.401 0.599 34 H 0.045 0.955 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.399 0.601 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.267 0.733 46 H 0.100 0.900 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.772 9.440 18.417 27.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.056 4.056 3 H 0.078 0.922 4 C 0.305 3.695 5 N -0.425 5.425 6 O -0.392 6.392 7 N -0.210 5.210 8 C -0.091 4.091 9 C -0.113 4.113 10 H 0.112 0.888 11 C -0.156 4.156 12 C -0.162 4.162 13 C -0.163 4.163 14 C 0.093 3.907 15 N -0.370 5.370 16 C 0.322 3.678 17 O -0.391 6.391 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.682 4.682 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 C -0.095 4.095 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.227 0.773 33 H 0.232 0.768 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.091 0.909 42 H 0.234 0.766 43 H 0.106 0.894 44 H 0.108 0.892 45 H 0.077 0.923 46 H 0.118 0.882 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 16.523 9.932 18.195 26.509 hybrid contribution 0.857 -1.496 -0.135 1.730 sum 17.381 8.436 18.060 26.446 Atomic orbital electron populations 1.21801 0.91264 1.04199 1.02903 1.21772 0.98069 0.95612 0.90192 0.92201 1.20507 0.76873 0.87527 0.84643 1.43918 1.71235 1.14232 1.13130 1.90762 1.48595 1.15250 1.84557 1.65353 1.05977 1.49538 1.00150 1.23314 0.89057 1.00343 0.96387 1.22707 0.94088 1.00629 0.93889 0.88773 1.22495 0.97788 0.98063 0.97252 1.22531 0.95517 1.01286 0.96820 1.22721 0.95639 0.96679 1.01261 1.21268 0.91860 0.87238 0.90320 1.45898 1.25421 1.14514 1.51182 1.20235 0.79632 0.89547 0.78373 1.90676 1.58100 1.28544 1.61770 1.23541 1.05461 0.99344 1.02116 1.85319 1.18711 1.19149 1.60101 1.22919 1.11663 0.98605 1.34975 0.90926 1.24985 0.95213 0.97438 0.95982 1.70026 1.13117 1.28957 1.38279 0.86127 0.78424 0.81984 0.79033 1.19613 1.20595 1.20610 1.23630 1.01152 0.96641 0.88083 0.90675 0.91754 0.90672 0.77257 0.76839 0.93697 0.89601 0.91371 0.91251 0.91400 0.91234 0.89892 0.90912 0.76613 0.89394 0.89243 0.92304 0.88184 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.00 37.16 0.33 -1.06 16 2 C 0.06 0.54 2.24 -68.86 -0.15 0.39 16 3 H 0.06 0.44 7.97 -51.92 -0.41 0.03 16 4 C 0.52 5.34 6.64 -10.98 -0.07 5.27 16 5 N -0.86 -4.92 8.87 31.22 0.28 -4.64 16 6 O -0.52 -7.72 16.86 5.56 0.09 -7.63 16 7 N -0.49 -5.75 4.87 -223.52 -1.09 -6.84 16 8 C 0.04 0.37 5.31 -2.23 -0.01 0.36 16 9 C -0.09 -0.91 3.70 -88.31 -0.33 -1.23 16 10 H 0.09 0.89 7.72 -51.93 -0.40 0.49 16 11 C -0.12 -0.93 6.36 -25.15 -0.16 -1.09 16 12 C -0.12 -1.13 6.90 -24.78 -0.17 -1.30 16 13 C -0.12 -1.47 5.66 -25.15 -0.14 -1.61 16 14 C 0.18 2.19 0.92 -129.51 -0.12 2.08 16 15 N -0.72 -9.94 5.27 -45.48 -0.24 -10.18 16 16 C 0.54 9.83 6.91 -10.99 -0.08 9.75 16 17 O -0.52 -11.01 13.38 5.56 0.07 -10.94 16 18 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.53 -15.32 9.50 30.94 0.29 -15.03 16 21 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 22 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.29 13.22 55.49 0.73 -25.55 16 24 Si 0.92 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.03 0.42 4.12 -2.23 -0.01 0.41 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.77 6.91 -51.93 -0.36 0.41 16 32 H 0.40 1.09 8.83 -40.82 -0.36 0.73 16 33 H 0.40 1.93 8.93 -40.82 -0.36 1.57 16 34 H 0.04 0.38 6.93 -51.93 -0.36 0.02 16 35 H 0.09 0.96 7.61 -51.93 -0.40 0.56 16 36 H 0.07 0.49 7.18 -51.93 -0.37 0.12 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.23 6.84 -51.93 -0.36 0.88 16 41 H 0.07 0.81 7.18 -51.93 -0.37 0.44 16 42 H 0.40 4.68 8.31 -40.82 -0.34 4.34 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 45 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.10 1.60 6.16 -51.93 -0.32 1.28 16 47 H 0.05 0.61 7.03 -51.93 -0.36 0.25 16 LS Contribution 383.55 15.07 5.78 5.78 Total: -1.00 -36.50 383.55 -9.38 -45.87 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.28 Total: 5.31 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.49 Total: -3.99 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.32 Total: -47.21 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: 0.17 Total: -18.57 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.50 -9.38 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111600315.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.411 kcal (2) G-P(sol) polarization free energy of solvation -36.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds